Strain Fitness in Sphingobium sp. HT1-2 around GFF1050

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,055,680	+				-0.5
1,055,680	+				-0.7
1,055,688	-				-1.6
1,055,700	+				-0.3
1,055,708	-				-1.4
1,055,735	+		GFF1048	0.13	-0.2
1,055,736	-		GFF1048	0.14	+1.3
1,055,753	-		GFF1048	0.28	+0.8
1,055,753	-		GFF1048	0.28	+0.0
1,055,766	+		GFF1048	0.39	+0.8
1,055,766	+		GFF1048	0.39	-0.1
1,055,766	+		GFF1048	0.39	+0.2
1,055,766	+		GFF1048	0.39	-2.1
1,055,774	-		GFF1048	0.46	+1.2
1,055,774	-		GFF1048	0.46	-1.3
1,055,774	-		GFF1048	0.46	-1.3
1,055,774	-		GFF1048	0.46	-1.8
1,055,774	-		GFF1048	0.46	+0.4
1,055,782	-		GFF1048	0.53	-1.0
1,055,782	-		GFF1048	0.53	+0.5
1,055,782	-		GFF1048	0.53	-0.3
1,055,804	+		GFF1048	0.72	-0.2
1,055,812	-		GFF1048	0.79	+0.7
1,055,812	-		GFF1048	0.79	+0.2
1,055,828	-				-1.1
1,055,830	+				+0.3
1,055,836	-				-0.6
1,055,845	+				+0.3
1,055,855	-				-1.1
1,055,869	-				+1.0
1,055,902	-				+1.4
1,056,029	+				-0.1
1,056,047	-				+0.3
1,056,054	+				-0.8
1,056,054	+				-0.3
1,056,062	-				+0.6
1,056,062	-				-0.1
1,056,062	-				+0.1
1,056,083	+				-1.4
1,056,099	+				+0.2
1,056,121	+				-0.9
1,056,121	+				+0.5
1,056,121	+				-0.6
1,056,121	+				+0.2
1,056,131	+				+0.8
1,056,131	+				+0.9
1,056,134	-				-1.2
1,056,139	-				+1.1
1,056,146	+				+0.5
1,056,149	-				-1.4
1,056,216	+		GFF1049	0.21	+0.6
1,056,242	+		GFF1049	0.26	-1.5
1,056,250	-		GFF1049	0.27	+1.3
1,056,252	+		GFF1049	0.28	-1.0
1,056,252	+		GFF1049	0.28	-0.6
1,056,260	-		GFF1049	0.29	-0.8
1,056,265	-		GFF1049	0.30	+1.8
1,056,270	+		GFF1049	0.31	-0.9
1,056,273	-		GFF1049	0.32	-0.2
1,056,301	-		GFF1049	0.37	-1.1
1,056,318	+		GFF1049	0.40	-1.1
1,056,320	+		GFF1049	0.40	-0.6
1,056,326	-		GFF1049	0.41	-0.3
1,056,328	+		GFF1049	0.42	-0.8
1,056,328	-		GFF1049	0.42	-2.1
1,056,336	-		GFF1049	0.43	-3.0
1,056,336	-		GFF1049	0.43	-1.3
1,056,347	+		GFF1049	0.45	-1.3
1,056,347	+		GFF1049	0.45	+0.2
1,056,354	+		GFF1049	0.47	-1.3
1,056,354	+		GFF1049	0.47	-1.0
1,056,357	-		GFF1049	0.47	-0.3
1,056,368	+		GFF1049	0.49	-0.8
1,056,469	+		GFF1049	0.68	+0.3
1,056,474	+		GFF1049	0.69	+0.8
1,056,493	+		GFF1049	0.72	+0.8
1,056,493	+		GFF1049	0.72	+0.9
1,056,493	+		GFF1049	0.72	+0.3
1,056,497	-		GFF1049	0.73	-0.8
1,056,497	-		GFF1049	0.73	-0.9
1,056,508	+		GFF1049	0.75	+0.3
1,056,516	-		GFF1049	0.76	+0.6
1,056,531	-		GFF1049	0.79	-0.1
1,056,531	-		GFF1049	0.79	+0.2
1,056,531	-		GFF1049	0.79	+1.4
1,056,541	+		GFF1049	0.81	-1.7
1,056,541	+		GFF1049	0.81	-0.4
1,056,541	+		GFF1049	0.81	-2.3
1,056,541	+		GFF1049	0.81	-0.9
1,056,541	+		GFF1049	0.81	+0.5
1,056,541	+		GFF1049	0.81	-0.8
1,056,541	+		GFF1049	0.81	-0.1
1,056,541	+		GFF1049	0.81	-0.3
1,056,546	+		GFF1049	0.82	+0.8
1,056,549	-		GFF1049	0.83	+0.4
1,056,549	-		GFF1049	0.83	-0.6
1,056,549	-		GFF1049	0.83	-1.1
1,056,549	-		GFF1049	0.83	+0.3
1,056,549	-		GFF1049	0.83	-0.7
1,056,549	-		GFF1049	0.83	+0.0
1,056,549	-		GFF1049	0.83	-0.6
1,056,549	-		GFF1049	0.83	-1.2
1,056,549	-		GFF1049	0.83	-0.3
1,056,549	-		GFF1049	0.83	+0.4
1,056,549	-		GFF1049	0.83	+0.1
1,056,549	-		GFF1049	0.83	-0.1
1,056,549	-		GFF1049	0.83	-0.2
1,056,549	-		GFF1049	0.83	-0.6
1,056,549	-		GFF1049	0.83	-0.5
1,056,549	-		GFF1049	0.83	-0.1
1,056,549	-		GFF1049	0.83	-1.1
1,056,578	+		GFF1049	0.88	-0.3
1,056,583	+		GFF1049	0.89	-0.1
1,056,583	+		GFF1049	0.89	-0.9
1,056,586	-		GFF1049	0.89	-0.3
1,056,591	-				+1.1
1,056,601	+				-1.5
1,056,601	+				+0.7
1,056,601	+				+0.0
1,056,601	+				+1.0
1,056,601	+				+0.2
1,056,609	-				-0.5
1,056,609	-				-0.1
1,056,610	-				-0.2
1,056,620	-				+0.9
1,056,625	+				-0.3
1,056,628	-				-0.0
1,056,632	+				+0.2
1,056,633	-				-0.6
1,056,638	+				-0.6
1,056,640	-				-2.7
1,056,640	-				+0.9
1,056,642	+				-0.8
1,056,646	-				-0.4
1,056,646	-				-0.0
1,056,646	-				+0.3
1,056,677	+				+0.7
1,056,685	+				-1.1
1,056,717	-				+0.4
1,056,719	+				-2.0
1,056,738	-		GFF1050	0.11	+1.6
1,056,749	+		GFF1050	0.12	-1.3
1,056,774	-		GFF1050	0.15	-2.3
1,056,778	+		GFF1050	0.15	-2.4
1,056,778	+		GFF1050	0.15	-1.9
1,056,780	+		GFF1050	0.16	+0.3
1,056,786	-		GFF1050	0.16	+0.0
1,056,786	-		GFF1050	0.16	+1.0
1,056,786	-		GFF1050	0.16	-0.1
1,056,810	-		GFF1050	0.19	+0.2
1,056,828	+		GFF1050	0.21	-0.3
1,056,833	+		GFF1050	0.22	+0.4
1,056,833	+		GFF1050	0.22	-1.0
1,056,833	+		GFF1050	0.22	+1.1
1,056,833	+		GFF1050	0.22	-0.2
1,056,833	+		GFF1050	0.22	+0.2
1,056,833	+		GFF1050	0.22	-1.3
1,056,833	+		GFF1050	0.22	-0.6
1,056,833	+		GFF1050	0.22	-1.0
1,056,833	+		GFF1050	0.22	-0.5
1,056,833	+		GFF1050	0.22	+0.8
1,056,833	+		GFF1050	0.22	-0.3
1,056,833	+		GFF1050	0.22	+0.0
1,056,833	+		GFF1050	0.22	+0.3
1,056,833	+		GFF1050	0.22	+0.2
1,056,838	+		GFF1050	0.22	+0.9
1,056,841	-		GFF1050	0.23	-0.3
1,056,841	-		GFF1050	0.23	-0.3
1,056,841	-		GFF1050	0.23	-0.0
1,056,841	-		GFF1050	0.23	-0.5
1,056,841	-		GFF1050	0.23	-0.3
1,056,841	-		GFF1050	0.23	-0.1
1,056,846	-		GFF1050	0.23	-0.4
1,056,846	-		GFF1050	0.23	+0.1
1,056,846	-		GFF1050	0.23	+0.7
1,056,852	-		GFF1050	0.24	+0.6
1,056,857	+		GFF1050	0.25	-1.5
1,056,873	-		GFF1050	0.26	+0.6
1,056,877	+		GFF1050	0.27	+0.9
1,056,877	+		GFF1050	0.27	-0.5
1,056,879	+		GFF1050	0.27	+0.2
1,056,879	+		GFF1050	0.27	-0.4
1,056,887	-		GFF1050	0.28	+0.8
1,056,887	-		GFF1050	0.28	+0.3
1,056,889	+		GFF1050	0.28	-0.4
1,056,892	-		GFF1050	0.29	-1.4
1,056,904	+		GFF1050	0.30	-0.5
1,056,935	-		GFF1050	0.34	-0.7
1,056,955	+		GFF1050	0.36	-0.3
1,056,963	-		GFF1050	0.37	+0.2
1,056,975	+		GFF1050	0.38	+0.7
1,056,983	-		GFF1050	0.39	+0.7
1,056,986	+		GFF1050	0.40	-0.2
1,056,988	-		GFF1050	0.40	+0.6
1,056,988	-		GFF1050	0.40	-0.6
1,056,989	-		GFF1050	0.40	-0.9
1,056,993	-		GFF1050	0.40	-2.2
1,056,999	-		GFF1050	0.41	-0.6
1,057,005	+		GFF1050	0.42	-0.7
1,057,005	+		GFF1050	0.42	-1.7
1,057,005	+		GFF1050	0.42	+0.3
1,057,005	+		GFF1050	0.42	-0.2
1,057,005	+		GFF1050	0.42	-0.3
1,057,005	+		GFF1050	0.42	+0.7
1,057,005	+		GFF1050	0.42	-0.8
1,057,005	+		GFF1050	0.42	+1.4
1,057,013	-		GFF1050	0.43	-0.0
1,057,013	-		GFF1050	0.43	+0.0
1,057,013	-		GFF1050	0.43	+0.4
1,057,013	-		GFF1050	0.43	-1.1
1,057,013	-		GFF1050	0.43	+0.3
1,057,015	+		GFF1050	0.43	-0.0
1,057,057	-		GFF1050	0.48	-1.4
1,057,064	-		GFF1050	0.49	-0.7
1,057,068	+		GFF1050	0.49	-1.8
1,057,071	+		GFF1050	0.50	-0.6
1,057,090	+		GFF1050	0.52	-0.4
1,057,100	+		GFF1050	0.53	-2.5
1,057,106	-		GFF1050	0.54	-0.3
1,057,108	+		GFF1050	0.54	-1.5
1,057,110	-		GFF1050	0.54	-1.6
1,057,113	+		GFF1050	0.55	+0.6
1,057,113	+		GFF1050	0.55	-0.6
1,057,116	-		GFF1050	0.55	-1.8
1,057,116	-		GFF1050	0.55	+0.0
1,057,116	-		GFF1050	0.55	+0.2
1,057,121	-		GFF1050	0.55	-0.5
1,057,121	-		GFF1050	0.55	-1.8
1,057,121	-		GFF1050	0.55	+0.8
1,057,123	+		GFF1050	0.56	+1.3
1,057,123	+		GFF1050	0.56	-0.3
1,057,131	-		GFF1050	0.57	-0.2
1,057,154	+		GFF1050	0.59	-0.6
1,057,164	+		GFF1050	0.60	+1.0
1,057,164	+		GFF1050	0.60	-1.9
1,057,164	+		GFF1050	0.60	-0.4
1,057,164	+		GFF1050	0.60	+0.5
1,057,172	-		GFF1050	0.61	+1.2
1,057,172	-		GFF1050	0.61	-0.2
1,057,172	-		GFF1050	0.61	-0.3
1,057,177	-		GFF1050	0.62	-0.6
1,057,182	-		GFF1050	0.63	-0.0
1,057,195	+		GFF1050	0.64	-0.3
1,057,195	-		GFF1050	0.64	+1.3
1,057,197	+		GFF1050	0.64	-2.1
1,057,203	-		GFF1050	0.65	+0.1
1,057,203	-		GFF1050	0.65	+0.4
1,057,215	-		GFF1050	0.66	-0.0
1,057,215	-		GFF1050	0.66	-0.7
1,057,238	-		GFF1050	0.69	+0.7
1,057,242	+		GFF1050	0.70	-0.4
1,057,242	+		GFF1050	0.70	-0.3
1,057,250	-		GFF1050	0.71	+1.0
1,057,282	-		GFF1050	0.74	-0.9
1,057,326	-		GFF1050	0.79	-1.3
1,057,326	-		GFF1050	0.79	-0.2
1,057,344	+		GFF1050	0.82	-1.4
1,057,349	+		GFF1050	0.82	-0.4
1,057,354	+		GFF1050	0.83	+0.5
1,057,359	+		GFF1050	0.83	-0.6
1,057,362	-		GFF1050	0.84	+0.2
1,057,362	-		GFF1050	0.84	-1.0
1,057,367	-		GFF1050	0.84	-1.2
1,057,367	-		GFF1050	0.84	-1.3
1,057,367	-		GFF1050	0.84	-1.0
1,057,367	-		GFF1050	0.84	-2.2
1,057,367	-		GFF1050	0.84	+1.1
1,057,372	-		GFF1050	0.85	-0.1
1,057,379	-		GFF1050	0.86	-0.1
1,057,379	-		GFF1050	0.86	-0.4
1,057,379	-		GFF1050	0.86	-2.1
1,057,389	+		GFF1050	0.87	-0.0
1,057,399	+		GFF1050	0.88	+0.2
1,057,407	-		GFF1050	0.89	-0.5
1,057,407	-		GFF1050	0.89	-0.6
1,057,407	-		GFF1050	0.89	+0.3
1,057,415	+		GFF1050	0.90	-0.5
1,057,423	-				+0.2
1,057,446	+				-1.3
1,057,465	-				-0.1
1,057,529	-		GFF1051	0.15	-0.3
1,057,549	+		GFF1051	0.24	+0.2
1,057,549	+		GFF1051	0.24	-0.0
1,057,549	+		GFF1051	0.24	+0.1
1,057,549	+		GFF1051	0.24	-0.4
1,057,549	+		GFF1051	0.24	-1.3
1,057,549	+		GFF1051	0.24	+1.1
1,057,550	+		GFF1051	0.24	+0.9
1,057,557	-		GFF1051	0.28	+0.2
1,057,557	-		GFF1051	0.28	-0.5
1,057,557	-		GFF1051	0.28	-2.0
1,057,560	+		GFF1051	0.29	+0.0
1,057,563	-		GFF1051	0.31	-0.8
1,057,568	-		GFF1051	0.33	-0.3
1,057,577	+		GFF1051	0.37	-1.8
1,057,590	-		GFF1051	0.43	-2.1
1,057,598	+		GFF1051	0.47	-0.9
1,057,598	-		GFF1051	0.47	-0.4
1,057,603	+		GFF1051	0.49	-1.5
1,057,607	-		GFF1051	0.51	+0.1
1,057,626	+		GFF1051	0.60	-0.0
1,057,627	-		GFF1051	0.61	+0.1
1,057,627	-		GFF1051	0.61	+1.1
1,057,629	-		GFF1051	0.62	+0.6
1,057,634	-		GFF1051	0.64	-1.1
1,057,634	-		GFF1051	0.64	-1.1
1,057,634	-		GFF1051	0.64	+0.7
1,057,634	-		GFF1051	0.64	+0.7
1,057,634	-		GFF1051	0.64	+0.0
1,057,634	-		GFF1051	0.64	-0.7
1,057,639	+		GFF1051	0.66	-0.3
1,057,639	+		GFF1051	0.66	+0.1
1,057,639	+		GFF1051	0.66	-1.5
1,057,650	+		GFF1051	0.71	-2.3
1,057,650	+		GFF1051	0.71	+0.4
1,057,657	+		GFF1051	0.75	-0.4
1,057,658	+		GFF1051	0.75	+1.8
1,057,658	+		GFF1051	0.75	-0.8
1,057,665	+		GFF1051	0.78	-2.0
1,057,665	-		GFF1051	0.78	-0.2
1,057,666	-		GFF1051	0.79	-0.3
1,057,667	+		GFF1051	0.79	+0.9
1,057,675	-		GFF1051	0.83	+0.1
1,057,698	-				+1.6
1,057,705	+				-1.3
1,057,720	-				-0.3
1,057,768	+				+0.0
1,057,768	+				-0.6
1,057,768	-				-0.8
1,057,789	+				+0.1
1,057,789	+				-3.0
1,057,789	+				-0.9
1,057,795	-				+1.8
1,057,797	-				-0.3
1,057,797	-				-0.3
1,057,797	-				-0.5
1,057,812	-				-0.0
1,057,812	-				-1.4
1,057,843	-				+1.2