Strain Fitness in Sphingobium sp. HT1-2 around GFF104

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF103 and GFF104 are separated by 82 nucleotidesGFF104 and GFF105 are separated by 27 nucleotides GFF103 - Carboxynorspermidine synthase (EC 1.5.1.43), at 93,965 to 95,170 GFF103 GFF104 - Inner membrane protein, at 95,253 to 95,600 GFF104 GFF105 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 95,628 to 97,226 GFF105 Position (kb) 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 95.189 kb on - strandat 95.223 kb on - strandat 95.226 kb on - strandat 95.229 kb on + strandat 95.237 kb on - strandat 95.239 kb on + strandat 95.247 kb on - strandat 95.259 kb on - strandat 95.266 kb on + strandat 95.266 kb on + strandat 95.274 kb on - strandat 95.283 kb on + strandat 95.291 kb on - strand, within GFF104at 95.291 kb on - strand, within GFF104at 95.316 kb on + strand, within GFF104at 95.316 kb on + strand, within GFF104at 95.329 kb on - strand, within GFF104at 95.334 kb on + strand, within GFF104at 95.334 kb on + strand, within GFF104at 95.342 kb on - strand, within GFF104at 95.375 kb on - strand, within GFF104at 95.375 kb on - strand, within GFF104at 95.384 kb on - strand, within GFF104at 95.409 kb on - strand, within GFF104at 95.421 kb on + strand, within GFF104at 95.433 kb on + strand, within GFF104at 95.438 kb on + strand, within GFF104at 95.438 kb on + strand, within GFF104at 95.451 kb on + strand, within GFF104at 95.451 kb on + strand, within GFF104at 95.455 kb on + strand, within GFF104at 95.463 kb on - strand, within GFF104at 95.463 kb on - strand, within GFF104at 95.463 kb on - strand, within GFF104at 95.471 kb on - strand, within GFF104at 95.481 kb on + strand, within GFF104at 95.481 kb on + strand, within GFF104at 95.482 kb on - strand, within GFF104at 95.489 kb on - strand, within GFF104at 95.489 kb on - strand, within GFF104at 95.489 kb on - strand, within GFF104at 95.489 kb on - strand, within GFF104at 95.507 kb on + strand, within GFF104at 95.570 kb on - strandat 95.576 kb on + strandat 95.651 kb on - strandat 95.659 kb on + strandat 95.659 kb on + strandat 95.667 kb on - strandat 95.694 kb on - strandat 95.728 kb on + strandat 95.745 kb on + strandat 95.745 kb on + strandat 95.745 kb on + strandat 95.745 kb on + strandat 95.745 kb on + strandat 95.792 kb on - strand, within GFF105at 95.804 kb on + strand, within GFF105at 95.821 kb on + strand, within GFF105at 95.821 kb on + strand, within GFF105at 95.821 kb on + strand, within GFF105at 95.821 kb on + strand, within GFF105at 95.821 kb on + strand, within GFF105at 95.826 kb on + strand, within GFF105at 95.829 kb on - strand, within GFF105at 95.829 kb on - strand, within GFF105at 95.853 kb on - strand, within GFF105at 95.871 kb on - strand, within GFF105at 95.875 kb on + strand, within GFF105at 95.875 kb on + strand, within GFF105at 95.882 kb on - strand, within GFF105at 95.883 kb on - strand, within GFF105at 95.883 kb on - strand, within GFF105at 95.883 kb on - strand, within GFF105at 95.909 kb on + strand, within GFF105at 95.909 kb on + strand, within GFF105at 95.917 kb on - strand, within GFF105at 95.917 kb on - strand, within GFF105at 95.917 kb on - strand, within GFF105at 95.928 kb on + strand, within GFF105at 95.936 kb on - strand, within GFF105at 95.952 kb on + strand, within GFF105at 95.957 kb on + strand, within GFF105at 95.972 kb on + strand, within GFF105at 95.972 kb on + strand, within GFF105at 95.972 kb on + strand, within GFF105at 95.979 kb on + strand, within GFF105at 95.980 kb on - strand, within GFF105at 95.980 kb on - strand, within GFF105at 95.980 kb on - strand, within GFF105at 95.998 kb on - strand, within GFF105at 96.005 kb on - strand, within GFF105at 96.019 kb on + strand, within GFF105at 96.025 kb on - strand, within GFF105at 96.029 kb on - strand, within GFF105at 96.034 kb on + strand, within GFF105at 96.042 kb on - strand, within GFF105at 96.050 kb on + strand, within GFF105at 96.058 kb on - strand, within GFF105at 96.161 kb on + strand, within GFF105at 96.161 kb on + strand, within GFF105at 96.161 kb on + strand, within GFF105at 96.162 kb on - strand, within GFF105at 96.169 kb on - strand, within GFF105at 96.169 kb on - strand, within GFF105at 96.169 kb on - strand, within GFF105at 96.175 kb on + strand, within GFF105at 96.175 kb on + strand, within GFF105at 96.178 kb on - strand, within GFF105at 96.179 kb on - strand, within GFF105at 96.183 kb on - strand, within GFF105at 96.183 kb on - strand, within GFF105at 96.183 kb on - strand, within GFF105at 96.189 kb on + strand, within GFF105at 96.196 kb on + strand, within GFF105at 96.208 kb on + strand, within GFF105at 96.216 kb on - strand, within GFF105at 96.218 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.220 kb on + strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.228 kb on - strand, within GFF105at 96.247 kb on - strand, within GFF105at 96.263 kb on + strand, within GFF105at 96.295 kb on + strand, within GFF105at 96.303 kb on - strand, within GFF105at 96.314 kb on + strand, within GFF105at 96.335 kb on + strand, within GFF105at 96.341 kb on - strand, within GFF105at 96.341 kb on - strand, within GFF105at 96.341 kb on - strand, within GFF105at 96.343 kb on + strand, within GFF105at 96.343 kb on + strand, within GFF105at 96.343 kb on + strand, within GFF105at 96.343 kb on - strand, within GFF105at 96.343 kb on - strand, within GFF105at 96.345 kb on + strand, within GFF105at 96.351 kb on + strand, within GFF105at 96.351 kb on - strand, within GFF105at 96.353 kb on - strand, within GFF105at 96.384 kb on + strand, within GFF105at 96.402 kb on - strand, within GFF105at 96.414 kb on + strand, within GFF105at 96.414 kb on + strand, within GFF105at 96.414 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.433 kb on + strand, within GFF105at 96.441 kb on - strand, within GFF105at 96.441 kb on - strand, within GFF105at 96.441 kb on - strand, within GFF105at 96.441 kb on - strand, within GFF105at 96.441 kb on - strand, within GFF105at 96.441 kb on - strand, within GFF105at 96.441 kb on - strand, within GFF105at 96.441 kb on - strand, within GFF105at 96.441 kb on - strand, within GFF105at 96.460 kb on - strand, within GFF105at 96.511 kb on + strand, within GFF105at 96.569 kb on + strand, within GFF105at 96.569 kb on + strand, within GFF105at 96.592 kb on + strand, within GFF105at 96.600 kb on - strand, within GFF105

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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95,189 - -0.5
95,223 - +0.1
95,226 - -0.3
95,229 + -0.4
95,237 - -2.1
95,239 + +0.9
95,247 - +0.6
95,259 - +0.9
95,266 + -2.4
95,266 + +0.2
95,274 - +0.5
95,283 + -0.8
95,291 - GFF104 0.11 +1.0
95,291 - GFF104 0.11 +1.1
95,316 + GFF104 0.18 +0.1
95,316 + GFF104 0.18 -0.2
95,329 - GFF104 0.22 -2.4
95,334 + GFF104 0.23 +0.4
95,334 + GFF104 0.23 -0.2
95,342 - GFF104 0.26 +0.3
95,375 - GFF104 0.35 +0.1
95,375 - GFF104 0.35 -1.1
95,384 - GFF104 0.38 -1.1
95,409 - GFF104 0.45 -0.3
95,421 + GFF104 0.48 -1.8
95,433 + GFF104 0.52 -2.0
95,438 + GFF104 0.53 +0.3
95,438 + GFF104 0.53 -0.3
95,451 + GFF104 0.57 -3.0
95,451 + GFF104 0.57 +0.0
95,455 + GFF104 0.58 -0.1
95,463 - GFF104 0.60 -0.3
95,463 - GFF104 0.60 +0.0
95,463 - GFF104 0.60 -0.3
95,471 - GFF104 0.63 -0.4
95,481 + GFF104 0.66 +0.6
95,481 + GFF104 0.66 -0.5
95,482 - GFF104 0.66 +0.1
95,489 - GFF104 0.68 -0.6
95,489 - GFF104 0.68 -1.4
95,489 - GFF104 0.68 -0.2
95,489 - GFF104 0.68 +0.3
95,507 + GFF104 0.73 -2.6
95,570 - +0.3
95,576 + +0.7
95,651 - -0.3
95,659 + +0.0
95,659 + +0.3
95,667 - +0.1
95,694 - -1.3
95,728 + +0.0
95,745 + +1.6
95,745 + -1.3
95,745 + +0.7
95,745 + +0.4
95,745 + -0.8
95,792 - GFF105 0.10 -1.3
95,804 + GFF105 0.11 +0.6
95,821 + GFF105 0.12 +0.4
95,821 + GFF105 0.12 +0.4
95,821 + GFF105 0.12 +0.3
95,821 + GFF105 0.12 -0.4
95,821 + GFF105 0.12 -0.3
95,826 + GFF105 0.12 -0.1
95,829 - GFF105 0.13 -1.0
95,829 - GFF105 0.13 +0.7
95,853 - GFF105 0.14 -0.6
95,871 - GFF105 0.15 -0.3
95,875 + GFF105 0.15 -2.0
95,875 + GFF105 0.15 -0.6
95,882 - GFF105 0.16 +0.4
95,883 - GFF105 0.16 -1.3
95,883 - GFF105 0.16 -0.5
95,883 - GFF105 0.16 -0.1
95,909 + GFF105 0.18 -0.7
95,909 + GFF105 0.18 -0.1
95,917 - GFF105 0.18 -0.1
95,917 - GFF105 0.18 +1.1
95,917 - GFF105 0.18 +0.0
95,928 + GFF105 0.19 -1.2
95,936 - GFF105 0.19 +0.3
95,952 + GFF105 0.20 -0.1
95,957 + GFF105 0.21 -0.6
95,972 + GFF105 0.22 -0.3
95,972 + GFF105 0.22 -1.4
95,972 + GFF105 0.22 -0.9
95,979 + GFF105 0.22 +0.3
95,980 - GFF105 0.22 +0.5
95,980 - GFF105 0.22 +0.1
95,980 - GFF105 0.22 -1.3
95,998 - GFF105 0.23 +0.0
96,005 - GFF105 0.24 -0.4
96,019 + GFF105 0.24 -0.2
96,025 - GFF105 0.25 -0.1
96,029 - GFF105 0.25 +0.2
96,034 + GFF105 0.25 -1.0
96,042 - GFF105 0.26 -0.3
96,050 + GFF105 0.26 -0.5
96,058 - GFF105 0.27 -0.2
96,161 + GFF105 0.33 -1.0
96,161 + GFF105 0.33 +1.1
96,161 + GFF105 0.33 -1.3
96,162 - GFF105 0.33 -0.2
96,169 - GFF105 0.34 +0.3
96,169 - GFF105 0.34 -0.1
96,169 - GFF105 0.34 +1.0
96,175 + GFF105 0.34 +1.0
96,175 + GFF105 0.34 -0.5
96,178 - GFF105 0.34 +0.4
96,179 - GFF105 0.34 -0.4
96,183 - GFF105 0.35 -2.3
96,183 - GFF105 0.35 -0.6
96,183 - GFF105 0.35 +0.3
96,189 + GFF105 0.35 -0.4
96,196 + GFF105 0.36 +0.5
96,208 + GFF105 0.36 +0.3
96,216 - GFF105 0.37 +1.6
96,218 + GFF105 0.37 +0.4
96,220 + GFF105 0.37 +0.1
96,220 + GFF105 0.37 -0.6
96,220 + GFF105 0.37 -1.5
96,220 + GFF105 0.37 -0.0
96,220 + GFF105 0.37 -1.3
96,220 + GFF105 0.37 +0.5
96,220 + GFF105 0.37 -0.6
96,220 + GFF105 0.37 -0.8
96,220 + GFF105 0.37 -0.4
96,220 + GFF105 0.37 -0.5
96,220 + GFF105 0.37 +0.2
96,220 + GFF105 0.37 +1.8
96,220 + GFF105 0.37 +0.1
96,220 + GFF105 0.37 -1.4
96,220 + GFF105 0.37 -0.6
96,220 + GFF105 0.37 -2.0
96,220 + GFF105 0.37 +0.5
96,220 + GFF105 0.37 -0.6
96,220 + GFF105 0.37 +0.3
96,220 + GFF105 0.37 +0.4
96,220 + GFF105 0.37 -0.2
96,220 + GFF105 0.37 -0.3
96,228 - GFF105 0.38 -1.0
96,228 - GFF105 0.38 -1.4
96,228 - GFF105 0.38 -1.0
96,228 - GFF105 0.38 +0.6
96,228 - GFF105 0.38 +0.6
96,228 - GFF105 0.38 -0.1
96,228 - GFF105 0.38 -3.1
96,228 - GFF105 0.38 +1.0
96,228 - GFF105 0.38 -0.6
96,228 - GFF105 0.38 +0.1
96,228 - GFF105 0.38 -0.2
96,228 - GFF105 0.38 +1.4
96,228 - GFF105 0.38 +0.4
96,228 - GFF105 0.38 -0.3
96,228 - GFF105 0.38 +0.6
96,228 - GFF105 0.38 -0.8
96,228 - GFF105 0.38 -0.5
96,228 - GFF105 0.38 -0.9
96,228 - GFF105 0.38 +0.4
96,228 - GFF105 0.38 -0.8
96,228 - GFF105 0.38 -1.8
96,228 - GFF105 0.38 -0.3
96,228 - GFF105 0.38 -0.2
96,247 - GFF105 0.39 -0.5
96,263 + GFF105 0.40 +1.4
96,295 + GFF105 0.42 -0.7
96,303 - GFF105 0.42 +0.5
96,314 + GFF105 0.43 -0.6
96,335 + GFF105 0.44 -0.3
96,341 - GFF105 0.45 -1.0
96,341 - GFF105 0.45 +0.3
96,341 - GFF105 0.45 -2.2
96,343 + GFF105 0.45 +0.3
96,343 + GFF105 0.45 +0.1
96,343 + GFF105 0.45 +0.3
96,343 - GFF105 0.45 +0.2
96,343 - GFF105 0.45 -0.1
96,345 + GFF105 0.45 +0.1
96,351 + GFF105 0.45 -1.0
96,351 - GFF105 0.45 +0.7
96,353 - GFF105 0.45 +1.7
96,384 + GFF105 0.47 -0.3
96,402 - GFF105 0.48 -0.1
96,414 + GFF105 0.49 -0.0
96,414 + GFF105 0.49 +1.1
96,414 + GFF105 0.49 +0.6
96,433 + GFF105 0.50 -0.2
96,433 + GFF105 0.50 +0.1
96,433 + GFF105 0.50 -0.8
96,433 + GFF105 0.50 +1.3
96,433 + GFF105 0.50 -0.3
96,433 + GFF105 0.50 -0.1
96,433 + GFF105 0.50 +1.6
96,433 + GFF105 0.50 -0.3
96,433 + GFF105 0.50 +0.2
96,433 + GFF105 0.50 +0.6
96,433 + GFF105 0.50 -1.9
96,441 - GFF105 0.51 +0.6
96,441 - GFF105 0.51 +0.2
96,441 - GFF105 0.51 -1.8
96,441 - GFF105 0.51 -1.6
96,441 - GFF105 0.51 +0.3
96,441 - GFF105 0.51 +0.7
96,441 - GFF105 0.51 -1.8
96,441 - GFF105 0.51 +1.8
96,441 - GFF105 0.51 -0.9
96,460 - GFF105 0.52 +1.4
96,511 + GFF105 0.55 +1.0
96,569 + GFF105 0.59 -0.1
96,569 + GFF105 0.59 -0.7
96,592 + GFF105 0.60 -1.1
96,600 - GFF105 0.61 -0.6

Or see this region's nucleotide sequence