Strain Fitness in Sphingobium sp. HT1-2 around GFF1

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
134	+				+0.1
134	+				-0.2
134	+				-0.6
134	+				+1.3
142	+				-1.6
142	-				-1.7
142	-				+0.3
142	-				-0.9
144	-				-0.6
155	+				+0.8
162	+				+0.1
162	+				-0.3
162	+				+0.1
162	+				-2.3
170	-				-0.8
215	-				-1.4
219	+				+0.8
219	+				-0.6
225	+				-0.1
225	-				-0.4
225	-				-0.9
225	-				+0.1
225	-				-1.1
299	+				+0.2
299	+				-1.1
299	+				-3.3
299	+				-1.1
299	+				+0.6
299	+				-2.3
299	+				-0.8
301	+				-0.8
301	+				-1.6
307	-				-2.2
307	-				-0.6
307	-				+1.2
309	-				+0.9
336	+				-0.1
338	+				+0.4
339	-				-0.6
356	-				+0.1
358	+				-0.5
363	+				-0.7
366	-				-0.6
379	+		GFF1	0.11	+0.1
397	+		GFF1	0.13	+1.2
409	-		GFF1	0.15	+1.2
468	+		GFF1	0.22	+0.4
468	+		GFF1	0.22	+0.2
468	+		GFF1	0.22	-1.6
468	+		GFF1	0.22	+0.9
468	+		GFF1	0.22	+0.2
469	+		GFF1	0.22	-0.5
470	+		GFF1	0.22	+0.6
470	-		GFF1	0.22	-1.3
476	-		GFF1	0.23	+0.6
476	-		GFF1	0.23	-0.6
477	-		GFF1	0.23	-0.7
477	-		GFF1	0.23	-1.3
480	+		GFF1	0.23	-1.4
488	-		GFF1	0.24	+0.7
519	+		GFF1	0.28	-0.3
527	-		GFF1	0.29	-0.9
527	-		GFF1	0.29	+0.1
527	-		GFF1	0.29	-2.0
527	-		GFF1	0.29	-0.2
536	+		GFF1	0.30	-0.8
627	-		GFF1	0.41	+0.1
628	+		GFF1	0.41	+0.9
628	+		GFF1	0.41	-0.3
628	+		GFF1	0.41	+0.4
656	-		GFF1	0.45	-1.0
663	+		GFF1	0.45	+1.5
663	+		GFF1	0.45	-0.0
663	+		GFF1	0.45	+0.0
663	+		GFF1	0.45	-0.3
663	+		GFF1	0.45	+0.5
671	-		GFF1	0.46	-0.7
671	-		GFF1	0.46	+0.3
671	-		GFF1	0.46	-0.5
671	-		GFF1	0.46	+0.9
697	+		GFF1	0.50	+0.9
697	+		GFF1	0.50	-0.8
697	+		GFF1	0.50	-0.5
705	-		GFF1	0.51	+0.3
705	-		GFF1	0.51	+0.4
717	-		GFF1	0.52	-0.1
719	-		GFF1	0.52	-0.8
741	+		GFF1	0.55	+0.0
743	+		GFF1	0.55	+0.7
743	+		GFF1	0.55	-2.1
751	-		GFF1	0.56	+0.7
751	-		GFF1	0.56	-0.6
751	-		GFF1	0.56	+0.1
751	-		GFF1	0.56	-0.2
751	-		GFF1	0.56	+0.3
760	-		GFF1	0.57	-0.3
767	-		GFF1	0.58	-0.5
772	+		GFF1	0.59	+0.2
772	+		GFF1	0.59	+0.3
772	+		GFF1	0.59	-0.7
780	-		GFF1	0.60	-0.4
791	-		GFF1	0.61	+0.3
808	+		GFF1	0.63	-1.0
808	+		GFF1	0.63	-1.3
808	+		GFF1	0.63	-0.5
816	-		GFF1	0.64	-0.2
833	+		GFF1	0.66	-0.2
833	+		GFF1	0.66	-0.5
833	+		GFF1	0.66	+0.2
841	-		GFF1	0.67	-0.6
857	-		GFF1	0.69	-2.0
870	-		GFF1	0.70	-1.5
870	-		GFF1	0.70	-0.3
882	+		GFF1	0.72	-0.1
882	-		GFF1	0.72	-1.7
887	+		GFF1	0.72	-0.0
890	-		GFF1	0.73	-0.4
895	-		GFF1	0.73	+0.1
895	-		GFF1	0.73	-0.8
931	+		GFF1	0.78	-0.0
931	+		GFF1	0.78	-0.1
939	-		GFF1	0.79	-0.4
947	-		GFF1	0.80	+0.9
956	+		GFF1	0.81	+0.7
956	+		GFF1	0.81	+0.3
964	-		GFF1	0.82	-0.3
964	-		GFF1	0.82	+0.3
964	-		GFF1	0.82	+0.7
964	-		GFF1	0.82	-2.6
964	-		GFF1	0.82	-0.2
966	-		GFF1	0.82	+0.8
1,003	-		GFF1	0.86	-1.6
1,055	+				-0.3
1,066	+				+1.0
1,081	-				+0.3
1,126	+				-0.5
1,126	+				+0.8
1,134	-				-0.4
1,144	+				-1.3
1,152	+				-1.8
1,152	+				+0.5
1,152	-				+0.8
1,152	-				-0.6
1,157	+				-1.4
1,162	+				-0.1
1,165	-				-1.4
1,170	-				+0.3
1,170	-				+0.8
1,192	+				+0.5
1,202	+				-1.9
1,210	-				-0.9
1,249	-				+0.3
1,249	-				+0.7
1,250	-				-1.7
1,258	-		GFF2	0.10	+0.8
1,285	+		GFF2	0.14	-0.5
1,285	+		GFF2	0.14	-0.4
1,285	+		GFF2	0.14	-0.9
1,293	+		GFF2	0.15	-1.7
1,293	-		GFF2	0.15	-0.5
1,293	-		GFF2	0.15	+0.9
1,299	-		GFF2	0.15	-0.4
1,299	-		GFF2	0.15	-0.4
1,341	+		GFF2	0.21	+0.3
1,359	+		GFF2	0.23	+1.3
1,359	+		GFF2	0.23	+0.1
1,359	+		GFF2	0.23	+0.7
1,359	+		GFF2	0.23	-0.9
1,359	+		GFF2	0.23	+0.6
1,359	+		GFF2	0.23	-1.8
1,367	-		GFF2	0.24	+0.6
1,367	-		GFF2	0.24	+0.3
1,367	-		GFF2	0.24	+0.3
1,367	-		GFF2	0.24	-1.2
1,367	-		GFF2	0.24	+0.5
1,367	-		GFF2	0.24	+0.4
1,368	+		GFF2	0.25	-1.0
1,373	+		GFF2	0.25	+0.8
1,396	+		GFF2	0.28	+1.7
1,404	-		GFF2	0.29	+1.0
1,406	+		GFF2	0.30	-1.0
1,406	+		GFF2	0.30	-1.9
1,406	+		GFF2	0.30	-0.5
1,412	-		GFF2	0.30	+0.7
1,414	-		GFF2	0.31	-0.6
1,414	-		GFF2	0.31	-1.1
1,414	-		GFF2	0.31	+0.2
1,414	-		GFF2	0.31	-0.1
1,427	-		GFF2	0.32	+0.9
1,438	-		GFF2	0.34	-1.4
1,440	-		GFF2	0.34	-0.6
1,469	-		GFF2	0.38	-1.0
1,469	-		GFF2	0.38	-0.7
1,469	-		GFF2	0.38	+1.5
1,495	-		GFF2	0.41	+0.4
1,511	+		GFF2	0.43	+0.2
1,577	+		GFF2	0.52	-0.8
1,598	+		GFF2	0.55	+0.1
1,611	-		GFF2	0.57	+0.5
1,628	-		GFF2	0.59	+0.6
1,637	-		GFF2	0.60	-0.3
1,639	-		GFF2	0.60	+0.1
1,656	+		GFF2	0.62	-0.3
1,656	+		GFF2	0.62	+1.3
1,664	-		GFF2	0.64	-0.6
1,743	+		GFF2	0.74	-0.1
1,743	+		GFF2	0.74	-2.9
1,748	+		GFF2	0.75	-0.5
1,749	+		GFF2	0.75	-2.2
1,751	-		GFF2	0.75	+0.2
1,760	+		GFF2	0.76	+0.3
1,766	-		GFF2	0.77	+0.5
1,781	+		GFF2	0.79	-1.1
1,786	+		GFF2	0.80	-2.1
1,796	+		GFF2	0.81	-0.2
1,845	-		GFF2	0.87	+0.1
1,857	+		GFF2	0.89	+0.2
1,896	+				+0.1
2,045	-				-0.1
2,063	-				-1.3
2,071	+				-1.3
2,071	+				-1.5
2,071	+				+0.2
2,071	+				-0.1
2,071	+				+0.7
2,071	+				-0.7
2,071	+				-1.3
2,071	+				-1.2
2,071	+				-0.1
2,071	+				+0.8
2,071	+				-1.5
2,071	+				-1.4
2,071	+				-0.3
2,071	+				-0.3
2,071	+				-1.5
2,071	+				+0.3
2,079	-				-0.6
2,079	-				-0.2
2,079	-				-0.7
2,079	-				-1.8
2,079	-				-2.5
2,079	-				-0.4
2,079	-				-0.5
2,079	-				-0.1
2,079	-				+1.6
2,079	-				+0.8
2,079	-				-0.6
2,079	-				-0.8
2,079	-				-0.6
2,079	-				+0.5
2,079	-				-2.4
2,079	-				-0.4
2,079	-				+0.5
2,079	-				+2.2
2,079	-				-0.6
2,079	-				-0.3
2,079	-				-0.9
2,079	-				+0.7
2,079	-				+0.7
2,079	-				-1.9
2,079	-				+1.0
2,079	-				-1.7
2,079	-				-2.6
2,079	-				-0.0
2,079	-				+0.5
2,079	-				-1.0
2,079	-				+0.2
2,079	-				+0.4
2,079	-				+1.5
2,079	-				+0.7
2,079	-				+0.9
2,079	-				+0.2
2,081	+				-1.1
2,081	-				+0.9
2,088	+				+0.6
2,113	-				-0.7