Strain Fitness in Sphingobium sp. HT1-2 around GFF98

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
86,370	+		GFF96	0.19	-1.0
86,386	+		GFF96	0.21	-0.2
86,421	+		GFF96	0.26	-0.3
86,463	+		GFF96	0.32	-0.0
86,473	+		GFF96	0.33	+0.8
86,494	+		GFF96	0.36	+0.4
86,526	-		GFF96	0.41	+1.1
86,549	+		GFF96	0.44	+0.1
86,564	+		GFF96	0.46	+0.3
86,584	-		GFF96	0.49	+0.2
86,585	+		GFF96	0.49	+0.5
86,609	+		GFF96	0.52	-0.8
86,609	+		GFF96	0.52	-0.3
86,609	+		GFF96	0.52	+0.7
86,615	+		GFF96	0.53	-0.1
86,616	-		GFF96	0.53	-0.0
86,623	-		GFF96	0.54	-0.4
86,623	-		GFF96	0.54	-0.8
86,623	-		GFF96	0.54	+0.3
86,638	-		GFF96	0.56	-0.5
86,638	-		GFF96	0.56	+0.3
86,643	+		GFF96	0.57	+0.1
86,686	+		GFF96	0.63	+1.9
86,687	-		GFF96	0.63	-2.4
86,771	+		GFF96	0.75	+0.7
86,776	+		GFF96	0.76	+1.4
86,776	+		GFF96	0.76	+0.5
86,776	+		GFF96	0.76	-0.3
86,776	+		GFF96	0.76	+0.2
86,779	-		GFF96	0.76	-0.2
86,779	-		GFF96	0.76	-1.2
86,781	+		GFF96	0.76	-1.4
86,781	+		GFF96	0.76	+1.0
86,781	+		GFF96	0.76	-1.0
86,781	+		GFF96	0.76	-0.8
86,789	-		GFF96	0.77	-1.6
86,804	+		GFF96	0.79	-1.0
86,804	+		GFF96	0.79	+0.0
86,812	-		GFF96	0.81	+0.6
86,880	+				-1.6
86,880	+				+0.1
86,880	+				+0.8
86,880	-				-0.4
86,913	+				-0.8
86,916	-				+1.6
86,916	-				+0.8
86,921	+				+0.1
86,926	+				-1.1
86,948	-				+0.0
86,960	-				-0.2
86,960	-				+0.5
86,973	+				+1.2
86,981	-				+0.2
86,992	+				-1.1
86,992	+				-1.0
86,997	+				-1.2
87,000	-				+0.8
87,000	-				+0.2
87,000	-				-1.3
87,024	+				+0.8
87,029	+				-0.4
87,029	+				-0.7
87,039	+		GFF97	0.10	-0.5
87,039	+		GFF97	0.10	+0.4
87,047	-		GFF97	0.12	+0.4
87,058	+		GFF97	0.15	-1.2
87,058	-		GFF97	0.15	-0.7
87,062	+		GFF97	0.17	+0.1
87,062	+		GFF97	0.17	-0.7
87,070	-		GFF97	0.19	+1.0
87,113	-		GFF97	0.31	+2.5
87,149	-		GFF97	0.41	-0.9
87,171	+		GFF97	0.47	-1.9
87,171	+		GFF97	0.47	-2.2
87,172	+		GFF97	0.47	-0.0
87,173	-		GFF97	0.48	-0.3
87,209	+		GFF97	0.58	+0.1
87,209	+		GFF97	0.58	-0.1
87,209	+		GFF97	0.58	-0.2
87,217	-		GFF97	0.60	-1.3
87,217	-		GFF97	0.60	+0.1
87,219	+		GFF97	0.61	+0.3
87,229	+		GFF97	0.63	-2.1
87,232	-		GFF97	0.64	-0.8
87,232	-		GFF97	0.64	-0.5
87,237	-		GFF97	0.66	-0.5
87,237	-		GFF97	0.66	-0.6
87,239	+		GFF97	0.66	+0.3
87,262	+		GFF97	0.73	+0.1
87,262	+		GFF97	0.73	-0.4
87,268	+		GFF97	0.74	-0.3
87,310	+		GFF97	0.86	+0.1
87,310	+		GFF97	0.86	+1.5
87,313	-		GFF97	0.87	-0.1
87,315	+		GFF97	0.87	+1.1
87,318	-		GFF97	0.88	-0.1
87,327	-				-0.4
87,354	+				-0.5
87,354	+				-0.5
87,394	+				+0.2
87,435	+				-1.9
87,435	+				-0.2
87,443	-				+0.4
87,443	-				+0.8
87,443	-				+0.5
87,443	-				-0.3
87,443	-				-0.7
87,445	+				-0.4
87,470	+				+0.1
87,486	+				+0.2
87,507	+		GFF98	0.11	+0.4
87,514	-		GFF98	0.11	-1.2
87,566	-		GFF98	0.15	-0.8
87,573	+		GFF98	0.15	+0.4
87,600	+		GFF98	0.17	+0.9
87,600	+		GFF98	0.17	+0.8
87,610	+		GFF98	0.18	-1.3
87,610	+		GFF98	0.18	-2.0
87,610	-		GFF98	0.18	+0.0
87,612	-		GFF98	0.18	-1.6
87,615	+		GFF98	0.18	-2.0
87,634	+		GFF98	0.20	-1.7
87,634	+		GFF98	0.20	-0.5
87,648	-		GFF98	0.21	+0.1
87,654	+		GFF98	0.21	-1.3
87,662	-		GFF98	0.22	+0.2
87,662	-		GFF98	0.22	-0.4
87,662	-		GFF98	0.22	-0.2
87,705	-		GFF98	0.25	-1.4
87,709	+		GFF98	0.25	-1.5
87,709	+		GFF98	0.25	+0.3
87,709	+		GFF98	0.25	-1.7
87,709	+		GFF98	0.25	-2.4
87,709	+		GFF98	0.25	-0.6
87,715	-		GFF98	0.26	+1.2
87,717	-		GFF98	0.26	+0.8
87,717	-		GFF98	0.26	-0.6
87,717	-		GFF98	0.26	+0.3
87,717	-		GFF98	0.26	-1.3
87,717	-		GFF98	0.26	+0.9
87,717	-		GFF98	0.26	-0.4
87,719	+		GFF98	0.26	+0.1
87,719	+		GFF98	0.26	-1.8
87,719	+		GFF98	0.26	+1.3
87,727	-		GFF98	0.26	-0.2
87,727	-		GFF98	0.26	-1.0
87,727	-		GFF98	0.26	-0.0
87,727	-		GFF98	0.26	-0.1
87,727	-		GFF98	0.26	+0.5
87,732	+		GFF98	0.27	+0.6
87,782	+		GFF98	0.30	+0.8
87,803	+		GFF98	0.32	+0.9
87,813	+		GFF98	0.33	-0.6
87,813	+		GFF98	0.33	+0.0
87,813	+		GFF98	0.33	-0.2
87,813	+		GFF98	0.33	+0.1
87,821	-		GFF98	0.33	-1.2
87,821	-		GFF98	0.33	-0.7
87,832	-		GFF98	0.34	+0.4
87,848	+		GFF98	0.35	-0.4
87,856	+		GFF98	0.36	+0.6
87,872	+		GFF98	0.37	-0.6
87,883	+		GFF98	0.38	+1.0
87,883	+		GFF98	0.38	+0.6
87,883	+		GFF98	0.38	+0.4
87,883	+		GFF98	0.38	+1.0
87,883	+		GFF98	0.38	-0.5
87,891	-		GFF98	0.38	+1.2
87,891	-		GFF98	0.38	+0.7
87,891	-		GFF98	0.38	-1.2
87,901	+		GFF98	0.39	-2.3
87,904	-		GFF98	0.39	-0.7
87,926	-		GFF98	0.41	-0.1
87,928	-		GFF98	0.41	+0.8
87,933	-		GFF98	0.41	-1.2
87,939	-		GFF98	0.42	+0.2
87,953	-		GFF98	0.43	-0.1
87,967	+		GFF98	0.44	-0.1
87,967	+		GFF98	0.44	-0.9
87,967	+		GFF98	0.44	-1.0
87,972	+		GFF98	0.44	-0.6
87,973	+		GFF98	0.44	+1.2
87,975	-		GFF98	0.44	-0.6
88,029	+		GFF98	0.48	-0.7
88,034	+		GFF98	0.48	+0.3
88,037	-		GFF98	0.49	+1.1
88,056	+		GFF98	0.50	-0.7
88,056	+		GFF98	0.50	+0.1
88,056	+		GFF98	0.50	-0.5
88,056	+		GFF98	0.50	-0.0
88,056	+		GFF98	0.50	+1.2
88,064	-		GFF98	0.51	-1.0
88,064	-		GFF98	0.51	-1.5
88,064	-		GFF98	0.51	-2.8
88,064	-		GFF98	0.51	-0.7
88,064	-		GFF98	0.51	-0.3
88,064	-		GFF98	0.51	+0.6
88,064	-		GFF98	0.51	+1.6
88,064	-		GFF98	0.51	-0.7
88,126	+		GFF98	0.55	-0.7
88,140	-		GFF98	0.56	-2.0
88,142	+		GFF98	0.56	-2.7
88,147	+		GFF98	0.57	+1.6
88,147	+		GFF98	0.57	+0.4
88,147	+		GFF98	0.57	+1.0
88,147	+		GFF98	0.57	-0.2
88,152	+		GFF98	0.57	-2.0
88,152	+		GFF98	0.57	-0.1
88,152	+		GFF98	0.57	+1.2
88,152	+		GFF98	0.57	-0.6
88,155	-		GFF98	0.57	-1.1
88,155	-		GFF98	0.57	+0.6
88,156	-		GFF98	0.57	-0.0
88,160	-		GFF98	0.58	+0.2
88,160	-		GFF98	0.58	-0.8
88,185	-		GFF98	0.59	+0.0
88,193	+		GFF98	0.60	-0.4
88,193	+		GFF98	0.60	-1.1
88,201	-		GFF98	0.60	-0.7
88,208	-		GFF98	0.61	+0.1
88,208	-		GFF98	0.61	-0.7
88,222	+		GFF98	0.62	+1.0
88,240	-		GFF98	0.63	+0.8
88,240	-		GFF98	0.63	-1.2
88,242	+		GFF98	0.63	-2.1
88,242	+		GFF98	0.63	+0.2
88,242	+		GFF98	0.63	-1.0
88,242	+		GFF98	0.63	+0.3
88,247	+		GFF98	0.64	+0.7
88,250	-		GFF98	0.64	+0.7
88,250	-		GFF98	0.64	-0.2
88,261	+		GFF98	0.65	+0.7
88,263	+		GFF98	0.65	-0.1
88,279	+		GFF98	0.66	-0.0
88,281	-		GFF98	0.66	+0.5
88,287	-		GFF98	0.67	-0.0
88,328	+		GFF98	0.70	-1.9
88,328	+		GFF98	0.70	-0.8
88,336	-		GFF98	0.70	-1.6
88,336	-		GFF98	0.70	-0.3
88,341	-		GFF98	0.71	-0.4
88,343	-		GFF98	0.71	-0.3
88,351	+		GFF98	0.71	+0.1
88,367	-		GFF98	0.72	+0.5
88,367	-		GFF98	0.72	+0.4
88,374	+		GFF98	0.73	+0.1
88,379	+		GFF98	0.73	-1.3
88,414	-		GFF98	0.76	-1.5
88,424	+		GFF98	0.77	+0.8
88,432	-		GFF98	0.77	-0.2
88,441	+		GFF98	0.78	-0.7
88,473	+		GFF98	0.80	+0.3
88,476	+		GFF98	0.80	+0.7
88,478	+		GFF98	0.80	-0.6
88,478	+		GFF98	0.80	-0.7
88,484	-		GFF98	0.81	+0.3
88,486	+		GFF98	0.81	+1.5
88,486	+		GFF98	0.81	-1.5
88,486	+		GFF98	0.81	-1.8
88,486	-		GFF98	0.81	+0.1
88,486	-		GFF98	0.81	-1.4
88,492	-		GFF98	0.81	+0.1
88,493	+		GFF98	0.81	-0.6
88,493	+		GFF98	0.81	-0.1
88,493	+		GFF98	0.81	-0.0
88,494	-		GFF98	0.82	+1.0
88,494	-		GFF98	0.82	-1.7
88,501	-		GFF98	0.82	-0.4
88,501	-		GFF98	0.82	+1.0
88,501	-		GFF98	0.82	-0.1
88,501	-		GFF98	0.82	+0.7
88,501	-		GFF98	0.82	+0.5
88,503	+		GFF98	0.82	+1.1
88,524	+		GFF98	0.84	-0.7
88,547	+		GFF98	0.85	-1.2
88,547	+		GFF98	0.85	-1.1
88,547	+		GFF98	0.85	+0.8
88,547	+		GFF98	0.85	+0.2
88,561	+		GFF98	0.86	-1.2
88,561	+		GFF98	0.86	+0.2
88,561	+		GFF98	0.86	-0.9
88,561	+		GFF98	0.86	-0.2
88,561	+		GFF98	0.86	+0.2
88,561	-		GFF98	0.86	-0.6
88,569	-		GFF98	0.87	-0.2
88,569	-		GFF98	0.87	+0.8
88,569	-		GFF98	0.87	-1.5
88,586	-		GFF98	0.88	+0.1
88,592	+		GFF98	0.89	-2.0
88,598	+		GFF98	0.89	+1.2
88,600	-		GFF98	0.89	-0.0
88,638	-				-0.9
88,642	+				-0.7
88,656	+				+0.1
88,663	+				-0.3
88,693	-				-0.8
88,771	-				-0.1
88,788	+				+1.1
88,834	-				-0.4
88,835	-				+1.3
88,857	+				+1.1
88,868	+		GFF99	0.10	+1.8
88,873	+		GFF99	0.10	-0.1
88,945	-		GFF99	0.16	+1.7
89,018	-		GFF99	0.22	-0.1
89,062	+		GFF99	0.26	-1.0
89,085	+		GFF99	0.28	+1.4
89,085	+		GFF99	0.28	-0.2
89,106	-		GFF99	0.30	+0.6
89,106	-		GFF99	0.30	+0.4
89,108	+		GFF99	0.30	+0.8
89,110	+		GFF99	0.30	-1.0
89,116	-		GFF99	0.31	-0.2
89,118	+		GFF99	0.31	-0.5
89,118	+		GFF99	0.31	-0.3
89,118	+		GFF99	0.31	-0.6
89,121	-		GFF99	0.31	-0.3
89,123	+		GFF99	0.31	-2.0
89,123	+		GFF99	0.31	+0.1
89,123	+		GFF99	0.31	-1.8
89,123	+		GFF99	0.31	-3.0
89,123	+		GFF99	0.31	-0.0
89,123	+		GFF99	0.31	-0.7
89,126	-		GFF99	0.31	+0.0
89,126	-		GFF99	0.31	-0.3
89,126	-		GFF99	0.31	-0.1
89,126	-		GFF99	0.31	-1.6
89,126	-		GFF99	0.31	+0.2
89,128	+		GFF99	0.32	-0.6
89,131	-		GFF99	0.32	+0.3
89,131	-		GFF99	0.32	-1.1
89,131	-		GFF99	0.32	-2.1
89,131	-		GFF99	0.32	-0.4
89,131	-		GFF99	0.32	-0.5
89,189	-		GFF99	0.37	+1.1
89,189	-		GFF99	0.37	+0.3
89,190	+		GFF99	0.37	+0.7
89,200	+		GFF99	0.38	+0.4
89,203	+		GFF99	0.38	+0.5
89,211	-		GFF99	0.38	-0.5
89,272	-		GFF99	0.44	-0.4
89,272	-		GFF99	0.44	-0.4
89,277	+		GFF99	0.44	-0.5
89,292	+		GFF99	0.45	+1.0
89,322	+		GFF99	0.48	+0.6
89,338	+		GFF99	0.49	-0.6
89,338	+		GFF99	0.49	+0.5
89,370	+		GFF99	0.52	+0.6
89,370	+		GFF99	0.52	+0.3
89,370	+		GFF99	0.52	-0.3
89,370	+		GFF99	0.52	+1.1
89,370	+		GFF99	0.52	-1.4
89,370	+		GFF99	0.52	-1.5
89,378	+		GFF99	0.52	-0.8
89,378	+		GFF99	0.52	+0.9
89,378	-		GFF99	0.52	-1.5
89,378	-		GFF99	0.52	-1.4
89,378	-		GFF99	0.52	+1.0
89,378	-		GFF99	0.52	-1.4
89,378	-		GFF99	0.52	-1.6
89,378	-		GFF99	0.52	-0.6
89,378	-		GFF99	0.52	+0.2
89,378	-		GFF99	0.52	-1.4
89,386	-		GFF99	0.53	-0.1
89,386	-		GFF99	0.53	-0.4
89,386	-		GFF99	0.53	-0.0
89,395	+		GFF99	0.54	+0.8
89,403	+		GFF99	0.54	+0.1
89,438	+		GFF99	0.57	+1.0
89,453	-		GFF99	0.59	-0.4
89,471	-		GFF99	0.60	-0.3
89,480	+		GFF99	0.61	-0.1
89,485	+		GFF99	0.61	+0.0
89,485	+		GFF99	0.61	-0.6
89,490	+		GFF99	0.62	-2.6
89,490	+		GFF99	0.62	-1.7
89,490	+		GFF99	0.62	-0.6
89,490	+		GFF99	0.62	+0.4
89,490	+		GFF99	0.62	-0.3
89,490	+		GFF99	0.62	+0.7
89,495	+		GFF99	0.62	+0.2
89,498	-		GFF99	0.62	-0.5
89,498	-		GFF99	0.62	+0.1
89,498	-		GFF99	0.62	-0.6
89,498	-		GFF99	0.62	+0.3
89,508	-		GFF99	0.63	+1.1
89,508	-		GFF99	0.63	+0.9
89,508	-		GFF99	0.63	-1.3
89,522	-		GFF99	0.64	-1.2
89,538	-		GFF99	0.66	-0.8
89,539	-		GFF99	0.66	-0.3
89,541	+		GFF99	0.66	+0.8
89,541	+		GFF99	0.66	-2.3
89,558	+		GFF99	0.67	-0.1
89,558	+		GFF99	0.67	-0.6
89,558	+		GFF99	0.67	-2.3
89,559	-		GFF99	0.67	-0.5
89,566	-		GFF99	0.68	+0.4
89,576	+		GFF99	0.69	-2.2
89,576	+		GFF99	0.69	+0.0
89,594	+		GFF99	0.70	-1.0
89,594	+		GFF99	0.70	-0.2
89,602	-		GFF99	0.71	-0.0
89,615	+		GFF99	0.72	-0.1
89,623	-		GFF99	0.73	-0.3
89,710	+		GFF99	0.80	+1.0
89,710	+		GFF99	0.80	-2.8
89,731	+		GFF99	0.82	-1.5
89,750	+		GFF99	0.83	-1.2
89,750	+		GFF99	0.83	+0.6