Strain Fitness in Sphingobium sp. HT1-2 around GFF882

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF880 and GFF881 overlap by 4 nucleotidesGFF881 and GFF882 overlap by 4 nucleotidesGFF882 and GFF883 overlap by 4 nucleotides GFF880 - PsbAd protein, at 871,873 to 872,250 GFF880 GFF881 - Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18), at 872,247 to 872,891 GFF881 GFF882 - Fumarylacetoacetase (EC 3.7.1.2), at 872,888 to 874,180 GFF882 GFF883 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5), at 874,177 to 875,493 GFF883 Position (kb) 872 873 874 875Strain fitness (log2 ratio) -2 -1 0 1 2at 871.936 kb on + strand, within GFF880at 871.936 kb on - strand, within GFF880at 871.944 kb on - strand, within GFF880at 871.954 kb on - strand, within GFF880at 871.959 kb on - strand, within GFF880at 871.978 kb on - strand, within GFF880at 872.058 kb on + strand, within GFF880at 872.126 kb on - strand, within GFF880at 872.230 kb on - strandat 872.300 kb on - strandat 872.323 kb on + strand, within GFF881at 872.371 kb on + strand, within GFF881at 872.371 kb on + strand, within GFF881at 872.374 kb on - strand, within GFF881at 872.387 kb on + strand, within GFF881at 872.397 kb on - strand, within GFF881at 872.432 kb on - strand, within GFF881at 872.462 kb on - strand, within GFF881at 872.477 kb on + strand, within GFF881at 872.477 kb on + strand, within GFF881at 872.485 kb on - strand, within GFF881at 872.485 kb on - strand, within GFF881at 872.489 kb on + strand, within GFF881at 872.494 kb on + strand, within GFF881at 872.500 kb on + strand, within GFF881at 872.573 kb on + strand, within GFF881at 872.607 kb on + strand, within GFF881at 872.637 kb on + strand, within GFF881at 872.648 kb on + strand, within GFF881at 872.656 kb on - strand, within GFF881at 872.656 kb on - strand, within GFF881at 872.671 kb on + strand, within GFF881at 872.671 kb on - strand, within GFF881at 872.683 kb on + strand, within GFF881at 872.702 kb on - strand, within GFF881at 872.710 kb on + strand, within GFF881at 872.718 kb on - strand, within GFF881at 872.720 kb on - strand, within GFF881at 872.776 kb on + strand, within GFF881at 872.784 kb on - strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.796 kb on + strand, within GFF881at 872.798 kb on + strand, within GFF881at 872.798 kb on + strand, within GFF881at 872.809 kb on - strand, within GFF881at 872.817 kb on + strand, within GFF881at 872.817 kb on + strand, within GFF881at 872.825 kb on - strand, within GFF881at 872.866 kb on - strandat 872.876 kb on + strandat 872.876 kb on + strandat 872.884 kb on - strandat 872.898 kb on + strandat 872.935 kb on + strandat 872.943 kb on - strandat 872.968 kb on + strandat 872.968 kb on + strandat 872.969 kb on + strandat 872.976 kb on - strandat 872.976 kb on - strandat 872.989 kb on + strandat 873.017 kb on - strandat 873.022 kb on - strand, within GFF882at 873.062 kb on + strand, within GFF882at 873.062 kb on + strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.084 kb on + strand, within GFF882at 873.142 kb on + strand, within GFF882at 873.168 kb on + strand, within GFF882at 873.176 kb on - strand, within GFF882at 873.198 kb on - strand, within GFF882at 873.198 kb on - strand, within GFF882at 873.198 kb on - strand, within GFF882at 873.217 kb on + strand, within GFF882at 873.276 kb on + strand, within GFF882at 873.284 kb on - strand, within GFF882at 873.383 kb on - strand, within GFF882at 873.387 kb on - strand, within GFF882at 873.473 kb on + strand, within GFF882at 873.484 kb on + strand, within GFF882at 873.518 kb on + strand, within GFF882at 873.533 kb on + strand, within GFF882at 873.533 kb on + strand, within GFF882at 873.533 kb on + strand, within GFF882at 873.536 kb on - strand, within GFF882at 873.541 kb on - strand, within GFF882at 873.541 kb on - strand, within GFF882at 873.568 kb on + strand, within GFF882at 873.658 kb on - strand, within GFF882at 873.719 kb on - strand, within GFF882at 873.845 kb on + strand, within GFF882at 873.845 kb on + strand, within GFF882at 873.853 kb on - strand, within GFF882at 873.887 kb on - strand, within GFF882at 873.897 kb on - strand, within GFF882at 873.927 kb on + strand, within GFF882at 873.927 kb on + strand, within GFF882at 873.958 kb on + strand, within GFF882at 873.996 kb on - strand, within GFF882at 874.021 kb on - strand, within GFF882at 874.065 kb on + strandat 874.085 kb on - strandat 874.134 kb on - strandat 874.201 kb on + strandat 874.209 kb on - strandat 874.244 kb on + strandat 874.306 kb on + strandat 874.314 kb on - strand, within GFF883at 874.319 kb on - strand, within GFF883at 874.337 kb on + strand, within GFF883at 874.337 kb on + strand, within GFF883at 874.337 kb on + strand, within GFF883at 874.345 kb on - strand, within GFF883at 874.345 kb on - strand, within GFF883at 874.345 kb on - strand, within GFF883at 874.370 kb on - strand, within GFF883at 874.371 kb on - strand, within GFF883at 874.391 kb on - strand, within GFF883at 874.425 kb on + strand, within GFF883at 874.457 kb on + strand, within GFF883at 874.462 kb on + strand, within GFF883at 874.462 kb on + strand, within GFF883at 874.466 kb on + strand, within GFF883at 874.470 kb on - strand, within GFF883at 874.470 kb on - strand, within GFF883at 874.494 kb on + strand, within GFF883at 874.507 kb on - strand, within GFF883at 874.509 kb on + strand, within GFF883at 874.522 kb on - strand, within GFF883at 874.535 kb on - strand, within GFF883at 874.540 kb on - strand, within GFF883at 874.594 kb on + strand, within GFF883at 874.594 kb on + strand, within GFF883at 874.594 kb on + strand, within GFF883at 874.594 kb on + strand, within GFF883at 874.594 kb on + strand, within GFF883at 874.602 kb on - strand, within GFF883at 874.602 kb on - strand, within GFF883at 874.602 kb on - strand, within GFF883at 874.602 kb on - strand, within GFF883at 874.617 kb on + strand, within GFF883at 874.626 kb on + strand, within GFF883at 874.634 kb on - strand, within GFF883at 874.641 kb on + strand, within GFF883at 874.649 kb on + strand, within GFF883at 874.651 kb on + strand, within GFF883at 874.657 kb on - strand, within GFF883at 874.668 kb on - strand, within GFF883at 874.673 kb on - strand, within GFF883at 874.693 kb on - strand, within GFF883at 874.693 kb on - strand, within GFF883at 874.706 kb on + strand, within GFF883at 874.714 kb on - strand, within GFF883at 874.730 kb on - strand, within GFF883at 874.730 kb on - strand, within GFF883at 874.731 kb on - strand, within GFF883at 874.731 kb on - strand, within GFF883at 874.739 kb on - strand, within GFF883at 874.797 kb on - strand, within GFF883at 874.849 kb on - strand, within GFF883at 874.851 kb on + strand, within GFF883at 874.857 kb on + strand, within GFF883at 874.866 kb on + strand, within GFF883at 874.870 kb on + strand, within GFF883at 874.894 kb on + strand, within GFF883at 874.901 kb on - strand, within GFF883at 874.933 kb on + strand, within GFF883at 874.954 kb on - strand, within GFF883at 874.958 kb on - strand, within GFF883at 874.971 kb on - strand, within GFF883at 875.014 kb on + strand, within GFF883at 875.020 kb on + strand, within GFF883at 875.048 kb on + strand, within GFF883at 875.092 kb on + strand, within GFF883at 875.102 kb on + strand, within GFF883at 875.102 kb on + strand, within GFF883at 875.102 kb on + strand, within GFF883at 875.102 kb on + strand, within GFF883at 875.107 kb on + strand, within GFF883at 875.107 kb on + strand, within GFF883at 875.107 kb on + strand, within GFF883at 875.107 kb on + strand, within GFF883at 875.110 kb on - strand, within GFF883at 875.110 kb on - strand, within GFF883at 875.110 kb on - strand, within GFF883at 875.110 kb on - strand, within GFF883at 875.110 kb on - strand, within GFF883at 875.110 kb on - strand, within GFF883at 875.110 kb on - strand, within GFF883at 875.115 kb on - strand, within GFF883at 875.115 kb on - strand, within GFF883at 875.115 kb on - strand, within GFF883at 875.115 kb on - strand, within GFF883at 875.115 kb on - strand, within GFF883at 875.115 kb on - strand, within GFF883at 875.141 kb on + strand, within GFF883at 875.180 kb on - strand, within GFF883

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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871,936 + GFF880 0.17 -0.1
871,936 - GFF880 0.17 +1.0
871,944 - GFF880 0.19 +1.0
871,954 - GFF880 0.21 -0.1
871,959 - GFF880 0.23 +0.2
871,978 - GFF880 0.28 -0.4
872,058 + GFF880 0.49 +0.0
872,126 - GFF880 0.67 -0.2
872,230 - +0.5
872,300 - +0.2
872,323 + GFF881 0.12 +1.0
872,371 + GFF881 0.19 +0.9
872,371 + GFF881 0.19 +1.0
872,374 - GFF881 0.20 +0.6
872,387 + GFF881 0.22 -1.5
872,397 - GFF881 0.23 -0.7
872,432 - GFF881 0.29 -0.3
872,462 - GFF881 0.33 +0.3
872,477 + GFF881 0.36 -1.2
872,477 + GFF881 0.36 +0.6
872,485 - GFF881 0.37 -2.2
872,485 - GFF881 0.37 -0.7
872,489 + GFF881 0.38 -2.2
872,494 + GFF881 0.38 +0.2
872,500 + GFF881 0.39 +2.0
872,573 + GFF881 0.51 -2.5
872,607 + GFF881 0.56 -0.8
872,637 + GFF881 0.60 -0.5
872,648 + GFF881 0.62 +1.5
872,656 - GFF881 0.63 -0.2
872,656 - GFF881 0.63 -0.8
872,671 + GFF881 0.66 -2.0
872,671 - GFF881 0.66 +1.5
872,683 + GFF881 0.68 +0.5
872,702 - GFF881 0.71 -1.8
872,710 + GFF881 0.72 -1.7
872,718 - GFF881 0.73 -0.1
872,720 - GFF881 0.73 -1.8
872,776 + GFF881 0.82 -0.0
872,784 - GFF881 0.83 -0.4
872,786 + GFF881 0.84 +1.1
872,786 + GFF881 0.84 -1.5
872,786 + GFF881 0.84 -0.6
872,786 + GFF881 0.84 +0.6
872,786 + GFF881 0.84 +0.1
872,786 + GFF881 0.84 -1.8
872,786 + GFF881 0.84 -0.1
872,786 + GFF881 0.84 -0.4
872,786 + GFF881 0.84 +0.2
872,786 + GFF881 0.84 +0.2
872,786 + GFF881 0.84 -1.8
872,786 + GFF881 0.84 -1.3
872,786 + GFF881 0.84 +1.4
872,786 + GFF881 0.84 -1.6
872,786 + GFF881 0.84 -2.2
872,786 + GFF881 0.84 -1.2
872,786 + GFF881 0.84 +0.0
872,786 + GFF881 0.84 -2.7
872,794 - GFF881 0.85 -0.9
872,794 - GFF881 0.85 -0.8
872,794 - GFF881 0.85 -0.2
872,794 - GFF881 0.85 +0.4
872,794 - GFF881 0.85 +1.5
872,794 - GFF881 0.85 +0.0
872,794 - GFF881 0.85 -1.3
872,794 - GFF881 0.85 +0.9
872,794 - GFF881 0.85 +1.1
872,794 - GFF881 0.85 -0.8
872,796 + GFF881 0.85 +0.3
872,798 + GFF881 0.85 -0.2
872,798 + GFF881 0.85 -0.6
872,809 - GFF881 0.87 -0.2
872,817 + GFF881 0.88 +0.4
872,817 + GFF881 0.88 -1.3
872,825 - GFF881 0.90 +1.3
872,866 - -0.7
872,876 + +0.2
872,876 + +0.2
872,884 - -1.1
872,898 + -0.6
872,935 + +1.6
872,943 - -1.8
872,968 + -0.3
872,968 + +1.0
872,969 + +0.7
872,976 - +0.7
872,976 - +2.7
872,989 + +0.5
873,017 - +0.2
873,022 - GFF882 0.10 -0.2
873,062 + GFF882 0.13 +1.6
873,062 + GFF882 0.13 +1.0
873,070 - GFF882 0.14 +0.8
873,070 - GFF882 0.14 -0.0
873,070 - GFF882 0.14 +1.2
873,070 - GFF882 0.14 +0.1
873,084 + GFF882 0.15 -0.4
873,142 + GFF882 0.20 -0.4
873,168 + GFF882 0.22 +0.3
873,176 - GFF882 0.22 +1.5
873,198 - GFF882 0.24 +0.1
873,198 - GFF882 0.24 -1.5
873,198 - GFF882 0.24 -2.4
873,217 + GFF882 0.25 -1.3
873,276 + GFF882 0.30 +0.8
873,284 - GFF882 0.31 +1.2
873,383 - GFF882 0.38 +0.8
873,387 - GFF882 0.39 -1.5
873,473 + GFF882 0.45 +0.8
873,484 + GFF882 0.46 -0.2
873,518 + GFF882 0.49 -0.7
873,533 + GFF882 0.50 -0.8
873,533 + GFF882 0.50 +0.7
873,533 + GFF882 0.50 +0.4
873,536 - GFF882 0.50 +0.2
873,541 - GFF882 0.51 +0.8
873,541 - GFF882 0.51 -0.6
873,568 + GFF882 0.53 +0.1
873,658 - GFF882 0.60 -1.0
873,719 - GFF882 0.64 -0.3
873,845 + GFF882 0.74 +1.7
873,845 + GFF882 0.74 -0.8
873,853 - GFF882 0.75 +0.4
873,887 - GFF882 0.77 +0.7
873,897 - GFF882 0.78 -0.2
873,927 + GFF882 0.80 +0.9
873,927 + GFF882 0.80 +1.1
873,958 + GFF882 0.83 -1.3
873,996 - GFF882 0.86 +1.6
874,021 - GFF882 0.88 +0.6
874,065 + +0.2
874,085 - +0.3
874,134 - +0.8
874,201 + -1.4
874,209 - +0.7
874,244 + +0.7
874,306 + -0.0
874,314 - GFF883 0.10 -1.2
874,319 - GFF883 0.11 -1.8
874,337 + GFF883 0.12 -0.2
874,337 + GFF883 0.12 +0.2
874,337 + GFF883 0.12 +1.1
874,345 - GFF883 0.13 +1.1
874,345 - GFF883 0.13 +0.1
874,345 - GFF883 0.13 -1.2
874,370 - GFF883 0.15 -0.8
874,371 - GFF883 0.15 +0.4
874,391 - GFF883 0.16 +0.2
874,425 + GFF883 0.19 -0.4
874,457 + GFF883 0.21 -0.1
874,462 + GFF883 0.22 +0.3
874,462 + GFF883 0.22 -2.2
874,466 + GFF883 0.22 +1.8
874,470 - GFF883 0.22 +1.3
874,470 - GFF883 0.22 +0.7
874,494 + GFF883 0.24 -0.1
874,507 - GFF883 0.25 -0.7
874,509 + GFF883 0.25 -1.1
874,522 - GFF883 0.26 -1.1
874,535 - GFF883 0.27 -1.0
874,540 - GFF883 0.28 +0.2
874,594 + GFF883 0.32 -1.2
874,594 + GFF883 0.32 -0.7
874,594 + GFF883 0.32 -1.2
874,594 + GFF883 0.32 +0.1
874,594 + GFF883 0.32 +0.7
874,602 - GFF883 0.32 -2.1
874,602 - GFF883 0.32 -0.5
874,602 - GFF883 0.32 +0.7
874,602 - GFF883 0.32 +0.5
874,617 + GFF883 0.33 -1.3
874,626 + GFF883 0.34 -0.8
874,634 - GFF883 0.35 -0.8
874,641 + GFF883 0.35 -1.5
874,649 + GFF883 0.36 +1.0
874,651 + GFF883 0.36 +0.4
874,657 - GFF883 0.36 +1.2
874,668 - GFF883 0.37 +0.2
874,673 - GFF883 0.38 +0.7
874,693 - GFF883 0.39 -1.8
874,693 - GFF883 0.39 +1.0
874,706 + GFF883 0.40 -0.3
874,714 - GFF883 0.41 -1.9
874,730 - GFF883 0.42 -0.6
874,730 - GFF883 0.42 -1.4
874,731 - GFF883 0.42 +1.6
874,731 - GFF883 0.42 -0.1
874,739 - GFF883 0.43 -0.7
874,797 - GFF883 0.47 +1.7
874,849 - GFF883 0.51 -0.6
874,851 + GFF883 0.51 -1.2
874,857 + GFF883 0.52 -0.3
874,866 + GFF883 0.52 -0.1
874,870 + GFF883 0.53 +0.3
874,894 + GFF883 0.54 -0.4
874,901 - GFF883 0.55 +0.5
874,933 + GFF883 0.57 +1.2
874,954 - GFF883 0.59 -0.2
874,958 - GFF883 0.59 -1.0
874,971 - GFF883 0.60 -1.1
875,014 + GFF883 0.64 +0.4
875,020 + GFF883 0.64 -0.9
875,048 + GFF883 0.66 +0.7
875,092 + GFF883 0.69 +2.2
875,102 + GFF883 0.70 +1.0
875,102 + GFF883 0.70 +0.8
875,102 + GFF883 0.70 -0.8
875,102 + GFF883 0.70 +0.3
875,107 + GFF883 0.71 +0.8
875,107 + GFF883 0.71 +0.7
875,107 + GFF883 0.71 -1.2
875,107 + GFF883 0.71 -0.2
875,110 - GFF883 0.71 +1.1
875,110 - GFF883 0.71 -0.1
875,110 - GFF883 0.71 +0.1
875,110 - GFF883 0.71 -1.5
875,110 - GFF883 0.71 -0.8
875,110 - GFF883 0.71 -1.0
875,110 - GFF883 0.71 +0.2
875,115 - GFF883 0.71 -1.0
875,115 - GFF883 0.71 +0.8
875,115 - GFF883 0.71 -0.7
875,115 - GFF883 0.71 -1.1
875,115 - GFF883 0.71 +0.3
875,115 - GFF883 0.71 -1.7
875,141 + GFF883 0.73 -0.9
875,180 - GFF883 0.76 +1.5

Or see this region's nucleotide sequence