Strain Fitness in Sphingobium sp. HT1-2 around GFF876

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF875 and GFF876 are separated by 4 nucleotidesGFF876 and GFF877 overlap by 1 nucleotidesGFF877 and GFF878 are separated by 2 nucleotides GFF875 - Efflux ABC transporter, permease/ATP-binding protein mlr7818, at 863,562 to 865,406 GFF875 GFF876 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 865,411 to 866,046 GFF876 GFF877 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis, at 866,046 to 866,651 GFF877 GFF878 - Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2), at 866,654 to 870,373 GFF878 Position (kb) 865 866 867Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 864.411 kb on + strand, within GFF875at 864.411 kb on + strand, within GFF875at 864.411 kb on - strand, within GFF875at 864.417 kb on + strand, within GFF875at 864.453 kb on + strand, within GFF875at 864.453 kb on + strand, within GFF875at 864.458 kb on + strand, within GFF875at 864.458 kb on + strand, within GFF875at 864.461 kb on - strand, within GFF875at 864.461 kb on - strand, within GFF875at 864.466 kb on - strand, within GFF875at 864.466 kb on - strand, within GFF875at 864.490 kb on + strand, within GFF875at 864.490 kb on + strand, within GFF875at 864.498 kb on - strand, within GFF875at 864.498 kb on - strand, within GFF875at 864.498 kb on - strand, within GFF875at 864.500 kb on + strand, within GFF875at 864.500 kb on + strand, within GFF875at 864.505 kb on + strand, within GFF875at 864.508 kb on - strand, within GFF875at 864.508 kb on - strand, within GFF875at 864.512 kb on + strand, within GFF875at 864.526 kb on + strand, within GFF875at 864.526 kb on + strand, within GFF875at 864.541 kb on + strand, within GFF875at 864.562 kb on - strand, within GFF875at 864.563 kb on + strand, within GFF875at 864.571 kb on - strand, within GFF875at 864.582 kb on - strand, within GFF875at 864.601 kb on + strand, within GFF875at 864.606 kb on + strand, within GFF875at 864.614 kb on - strand, within GFF875at 864.641 kb on - strand, within GFF875at 864.641 kb on - strand, within GFF875at 864.655 kb on + strand, within GFF875at 864.677 kb on + strand, within GFF875at 864.691 kb on + strand, within GFF875at 864.691 kb on + strand, within GFF875at 864.691 kb on + strand, within GFF875at 864.691 kb on + strand, within GFF875at 864.727 kb on - strand, within GFF875at 864.748 kb on + strand, within GFF875at 864.749 kb on + strand, within GFF875at 864.760 kb on + strand, within GFF875at 864.768 kb on - strand, within GFF875at 864.768 kb on - strand, within GFF875at 864.770 kb on + strand, within GFF875at 864.786 kb on + strand, within GFF875at 864.794 kb on - strand, within GFF875at 864.799 kb on - strand, within GFF875at 864.799 kb on - strand, within GFF875at 864.821 kb on - strand, within GFF875at 864.826 kb on - strand, within GFF875at 864.877 kb on + strand, within GFF875at 864.877 kb on + strand, within GFF875at 864.882 kb on + strand, within GFF875at 864.882 kb on + strand, within GFF875at 864.883 kb on - strand, within GFF875at 864.883 kb on - strand, within GFF875at 864.885 kb on - strand, within GFF875at 864.887 kb on + strand, within GFF875at 864.890 kb on - strand, within GFF875at 864.890 kb on - strand, within GFF875at 864.893 kb on + strand, within GFF875at 864.895 kb on - strand, within GFF875at 864.895 kb on - strand, within GFF875at 864.967 kb on - strand, within GFF875at 864.977 kb on - strand, within GFF875at 865.004 kb on + strand, within GFF875at 865.004 kb on + strand, within GFF875at 865.006 kb on + strand, within GFF875at 865.012 kb on - strand, within GFF875at 865.012 kb on - strand, within GFF875at 865.013 kb on - strand, within GFF875at 865.013 kb on - strand, within GFF875at 865.014 kb on - strand, within GFF875at 865.041 kb on - strand, within GFF875at 865.041 kb on - strand, within GFF875at 865.041 kb on - strand, within GFF875at 865.043 kb on + strand, within GFF875at 865.051 kb on + strand, within GFF875at 865.051 kb on - strand, within GFF875at 865.051 kb on - strand, within GFF875at 865.059 kb on - strand, within GFF875at 865.059 kb on - strand, within GFF875at 865.085 kb on + strand, within GFF875at 865.093 kb on - strand, within GFF875at 865.093 kb on - strand, within GFF875at 865.094 kb on - strand, within GFF875at 865.107 kb on + strand, within GFF875at 865.114 kb on - strand, within GFF875at 865.139 kb on - strand, within GFF875at 865.139 kb on - strand, within GFF875at 865.146 kb on - strand, within GFF875at 865.187 kb on + strand, within GFF875at 865.203 kb on - strand, within GFF875at 865.207 kb on - strand, within GFF875at 865.214 kb on + strand, within GFF875at 865.239 kb on - strandat 865.290 kb on + strandat 865.290 kb on + strandat 865.295 kb on + strandat 865.298 kb on - strandat 865.303 kb on - strandat 865.303 kb on - strandat 865.313 kb on + strandat 865.323 kb on - strandat 865.342 kb on - strandat 865.349 kb on + strandat 865.365 kb on + strandat 865.379 kb on + strandat 865.379 kb on - strandat 865.387 kb on - strandat 865.387 kb on - strandat 865.387 kb on - strandat 865.431 kb on - strandat 865.450 kb on - strandat 865.460 kb on + strandat 865.468 kb on - strandat 865.470 kb on + strandat 865.470 kb on + strandat 865.470 kb on + strandat 865.470 kb on + strandat 865.470 kb on + strandat 865.478 kb on - strand, within GFF876at 865.478 kb on - strand, within GFF876at 865.478 kb on - strand, within GFF876at 865.478 kb on - strand, within GFF876at 865.480 kb on + strand, within GFF876at 865.491 kb on + strand, within GFF876at 865.499 kb on - strand, within GFF876at 865.504 kb on - strand, within GFF876at 865.508 kb on - strand, within GFF876at 865.508 kb on - strand, within GFF876at 865.510 kb on + strand, within GFF876at 865.513 kb on - strand, within GFF876at 865.513 kb on - strand, within GFF876at 865.518 kb on - strand, within GFF876at 865.518 kb on - strand, within GFF876at 865.518 kb on - strand, within GFF876at 865.525 kb on + strand, within GFF876at 865.559 kb on + strand, within GFF876at 865.564 kb on + strand, within GFF876at 865.576 kb on + strand, within GFF876at 865.577 kb on - strand, within GFF876at 865.584 kb on - strand, within GFF876at 865.589 kb on - strand, within GFF876at 865.616 kb on + strand, within GFF876at 865.622 kb on - strand, within GFF876at 865.625 kb on + strand, within GFF876at 865.644 kb on + strand, within GFF876at 865.644 kb on + strand, within GFF876at 865.668 kb on - strand, within GFF876at 865.681 kb on + strand, within GFF876at 865.686 kb on + strand, within GFF876at 865.686 kb on + strand, within GFF876at 865.689 kb on - strand, within GFF876at 865.689 kb on - strand, within GFF876at 865.691 kb on + strand, within GFF876at 865.720 kb on - strand, within GFF876at 865.722 kb on - strand, within GFF876at 865.739 kb on + strand, within GFF876at 865.740 kb on - strand, within GFF876at 865.744 kb on + strand, within GFF876at 865.766 kb on - strand, within GFF876at 865.783 kb on - strand, within GFF876at 865.806 kb on - strand, within GFF876at 865.834 kb on - strand, within GFF876at 865.840 kb on + strand, within GFF876at 865.840 kb on + strand, within GFF876at 865.848 kb on - strand, within GFF876at 865.852 kb on + strand, within GFF876at 865.857 kb on + strand, within GFF876at 865.857 kb on + strand, within GFF876at 865.857 kb on + strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.891 kb on - strand, within GFF876at 865.905 kb on - strand, within GFF876at 865.907 kb on + strand, within GFF876at 865.916 kb on + strand, within GFF876at 865.925 kb on + strand, within GFF876at 865.934 kb on - strand, within GFF876at 865.949 kb on + strand, within GFF876at 865.952 kb on - strand, within GFF876at 866.007 kb on - strandat 866.174 kb on + strand, within GFF877at 866.193 kb on + strand, within GFF877at 866.202 kb on + strand, within GFF877at 866.240 kb on + strand, within GFF877at 866.245 kb on + strand, within GFF877at 866.295 kb on + strand, within GFF877at 866.345 kb on + strand, within GFF877at 866.362 kb on + strand, within GFF877at 866.369 kb on - strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.404 kb on - strand, within GFF877at 866.477 kb on - strand, within GFF877at 866.497 kb on + strand, within GFF877at 866.497 kb on + strand, within GFF877at 866.497 kb on + strand, within GFF877at 866.497 kb on + strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.512 kb on + strand, within GFF877at 866.520 kb on - strand, within GFF877at 866.523 kb on + strand, within GFF877at 866.524 kb on + strand, within GFF877at 866.524 kb on + strand, within GFF877at 866.524 kb on + strand, within GFF877at 866.524 kb on + strand, within GFF877at 866.524 kb on + strand, within GFF877at 866.524 kb on + strand, within GFF877at 866.524 kb on + strand, within GFF877at 866.525 kb on - strand, within GFF877at 866.526 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.577 kb on - strand, within GFF877at 866.651 kb on + strandat 866.659 kb on - strandat 866.661 kb on + strandat 866.661 kb on + strandat 866.683 kb on + strandat 866.684 kb on + strandat 866.726 kb on - strandat 866.727 kb on + strandat 866.756 kb on - strandat 866.758 kb on + strandat 866.815 kb on - strandat 866.825 kb on - strandat 866.825 kb on - strandat 866.840 kb on + strandat 866.910 kb on + strandat 866.910 kb on + strandat 866.918 kb on - strandat 866.949 kb on + strandat 867.023 kb on + strandat 867.023 kb on + strandat 867.031 kb on - strand, within GFF878at 867.031 kb on - strand, within GFF878

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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864,411 + GFF875 0.46 +1.1
864,411 + GFF875 0.46 +0.2
864,411 - GFF875 0.46 -0.3
864,417 + GFF875 0.46 -0.8
864,453 + GFF875 0.48 -0.2
864,453 + GFF875 0.48 -1.8
864,458 + GFF875 0.49 +0.7
864,458 + GFF875 0.49 +0.5
864,461 - GFF875 0.49 -0.1
864,461 - GFF875 0.49 +0.2
864,466 - GFF875 0.49 -0.2
864,466 - GFF875 0.49 -0.4
864,490 + GFF875 0.50 -0.5
864,490 + GFF875 0.50 +0.6
864,498 - GFF875 0.51 -1.3
864,498 - GFF875 0.51 -1.3
864,498 - GFF875 0.51 -1.4
864,500 + GFF875 0.51 -0.4
864,500 + GFF875 0.51 +1.0
864,505 + GFF875 0.51 -0.7
864,508 - GFF875 0.51 +0.2
864,508 - GFF875 0.51 -0.4
864,512 + GFF875 0.51 -0.8
864,526 + GFF875 0.52 -0.2
864,526 + GFF875 0.52 -0.2
864,541 + GFF875 0.53 +1.7
864,562 - GFF875 0.54 -0.1
864,563 + GFF875 0.54 -0.5
864,571 - GFF875 0.55 -1.1
864,582 - GFF875 0.55 +0.3
864,601 + GFF875 0.56 -0.1
864,606 + GFF875 0.57 -2.3
864,614 - GFF875 0.57 -0.6
864,641 - GFF875 0.58 -1.1
864,641 - GFF875 0.58 +0.4
864,655 + GFF875 0.59 +0.4
864,677 + GFF875 0.60 +1.7
864,691 + GFF875 0.61 -2.2
864,691 + GFF875 0.61 -0.2
864,691 + GFF875 0.61 +0.3
864,691 + GFF875 0.61 +0.1
864,727 - GFF875 0.63 +0.6
864,748 + GFF875 0.64 -0.0
864,749 + GFF875 0.64 -0.0
864,760 + GFF875 0.65 -1.6
864,768 - GFF875 0.65 -2.1
864,768 - GFF875 0.65 +0.7
864,770 + GFF875 0.65 -1.1
864,786 + GFF875 0.66 +0.6
864,794 - GFF875 0.67 -1.1
864,799 - GFF875 0.67 +0.9
864,799 - GFF875 0.67 +0.7
864,821 - GFF875 0.68 -2.0
864,826 - GFF875 0.69 +0.4
864,877 + GFF875 0.71 -0.1
864,877 + GFF875 0.71 +0.9
864,882 + GFF875 0.72 +1.6
864,882 + GFF875 0.72 -1.5
864,883 - GFF875 0.72 -0.0
864,883 - GFF875 0.72 -1.4
864,885 - GFF875 0.72 +0.9
864,887 + GFF875 0.72 +0.4
864,890 - GFF875 0.72 -0.7
864,890 - GFF875 0.72 -1.6
864,893 + GFF875 0.72 -0.7
864,895 - GFF875 0.72 +0.4
864,895 - GFF875 0.72 -2.7
864,967 - GFF875 0.76 -1.0
864,977 - GFF875 0.77 -0.4
865,004 + GFF875 0.78 -0.0
865,004 + GFF875 0.78 -1.3
865,006 + GFF875 0.78 -0.6
865,012 - GFF875 0.79 +1.2
865,012 - GFF875 0.79 -0.3
865,013 - GFF875 0.79 +0.9
865,013 - GFF875 0.79 -1.3
865,014 - GFF875 0.79 -1.8
865,041 - GFF875 0.80 +0.1
865,041 - GFF875 0.80 -0.8
865,041 - GFF875 0.80 -0.5
865,043 + GFF875 0.80 +0.9
865,051 + GFF875 0.81 -0.1
865,051 - GFF875 0.81 +0.6
865,051 - GFF875 0.81 +0.6
865,059 - GFF875 0.81 +0.2
865,059 - GFF875 0.81 -0.1
865,085 + GFF875 0.83 +0.3
865,093 - GFF875 0.83 -0.8
865,093 - GFF875 0.83 -1.3
865,094 - GFF875 0.83 -0.0
865,107 + GFF875 0.84 -2.5
865,114 - GFF875 0.84 +0.7
865,139 - GFF875 0.85 -1.3
865,139 - GFF875 0.85 -2.1
865,146 - GFF875 0.86 +0.3
865,187 + GFF875 0.88 +1.2
865,203 - GFF875 0.89 -0.9
865,207 - GFF875 0.89 -1.7
865,214 + GFF875 0.90 +0.4
865,239 - -0.1
865,290 + +1.1
865,290 + -2.6
865,295 + -1.9
865,298 - -0.4
865,303 - -0.8
865,303 - -1.1
865,313 + -0.4
865,323 - -1.6
865,342 - -1.3
865,349 + -1.8
865,365 + +0.7
865,379 + -1.5
865,379 - -0.4
865,387 - -0.5
865,387 - -2.1
865,387 - +0.4
865,431 - -0.0
865,450 - -2.1
865,460 + -0.3
865,468 - +0.6
865,470 + +1.4
865,470 + -0.7
865,470 + +0.5
865,470 + -0.0
865,470 + +0.5
865,478 - GFF876 0.11 +0.5
865,478 - GFF876 0.11 -1.6
865,478 - GFF876 0.11 -0.1
865,478 - GFF876 0.11 -0.6
865,480 + GFF876 0.11 -0.3
865,491 + GFF876 0.13 +1.0
865,499 - GFF876 0.14 -0.2
865,504 - GFF876 0.15 -1.2
865,508 - GFF876 0.15 +0.5
865,508 - GFF876 0.15 +0.1
865,510 + GFF876 0.16 -1.3
865,513 - GFF876 0.16 -0.8
865,513 - GFF876 0.16 +0.9
865,518 - GFF876 0.17 -0.6
865,518 - GFF876 0.17 +0.2
865,518 - GFF876 0.17 -0.3
865,525 + GFF876 0.18 +0.3
865,559 + GFF876 0.23 +0.6
865,564 + GFF876 0.24 -0.3
865,576 + GFF876 0.26 -1.3
865,577 - GFF876 0.26 -0.7
865,584 - GFF876 0.27 -0.1
865,589 - GFF876 0.28 +0.2
865,616 + GFF876 0.32 -1.5
865,622 - GFF876 0.33 -2.9
865,625 + GFF876 0.34 -0.6
865,644 + GFF876 0.37 +1.2
865,644 + GFF876 0.37 +0.6
865,668 - GFF876 0.40 -0.3
865,681 + GFF876 0.42 -1.8
865,686 + GFF876 0.43 -1.5
865,686 + GFF876 0.43 +0.7
865,689 - GFF876 0.44 -0.6
865,689 - GFF876 0.44 -0.7
865,691 + GFF876 0.44 -1.3
865,720 - GFF876 0.49 +1.1
865,722 - GFF876 0.49 -0.4
865,739 + GFF876 0.52 +0.1
865,740 - GFF876 0.52 -1.0
865,744 + GFF876 0.52 -0.9
865,766 - GFF876 0.56 +0.8
865,783 - GFF876 0.58 -1.6
865,806 - GFF876 0.62 +0.7
865,834 - GFF876 0.67 -1.0
865,840 + GFF876 0.67 -1.7
865,840 + GFF876 0.67 -0.0
865,848 - GFF876 0.69 -0.8
865,852 + GFF876 0.69 -2.6
865,857 + GFF876 0.70 +0.6
865,857 + GFF876 0.70 +0.9
865,857 + GFF876 0.70 +0.2
865,865 - GFF876 0.71 -0.4
865,865 - GFF876 0.71 +1.8
865,865 - GFF876 0.71 +1.2
865,865 - GFF876 0.71 -0.0
865,865 - GFF876 0.71 -0.3
865,865 - GFF876 0.71 +0.4
865,865 - GFF876 0.71 +1.6
865,865 - GFF876 0.71 +1.1
865,891 - GFF876 0.75 +1.5
865,905 - GFF876 0.78 +0.3
865,907 + GFF876 0.78 +0.3
865,916 + GFF876 0.79 +0.1
865,925 + GFF876 0.81 +0.2
865,934 - GFF876 0.82 +0.3
865,949 + GFF876 0.85 -0.6
865,952 - GFF876 0.85 -0.8
866,007 - -1.1
866,174 + GFF877 0.21 -1.7
866,193 + GFF877 0.24 +0.8
866,202 + GFF877 0.26 -1.1
866,240 + GFF877 0.32 -0.4
866,245 + GFF877 0.33 -2.3
866,295 + GFF877 0.41 -1.6
866,345 + GFF877 0.49 -2.3
866,362 + GFF877 0.52 +0.5
866,369 - GFF877 0.53 -2.0
866,386 + GFF877 0.56 -1.4
866,386 + GFF877 0.56 -2.1
866,386 + GFF877 0.56 -1.4
866,386 + GFF877 0.56 -0.1
866,404 - GFF877 0.59 -1.3
866,477 - GFF877 0.71 -1.1
866,497 + GFF877 0.74 -1.1
866,497 + GFF877 0.74 -0.1
866,497 + GFF877 0.74 -1.1
866,497 + GFF877 0.74 -1.5
866,505 - GFF877 0.76 -1.8
866,512 + GFF877 0.77 -2.4
866,520 - GFF877 0.78 -3.4
866,523 + GFF877 0.79 -0.5
866,524 + GFF877 0.79 +0.1
866,524 + GFF877 0.79 +0.6
866,524 + GFF877 0.79 -1.7
866,524 + GFF877 0.79 -0.8
866,524 + GFF877 0.79 -1.8
866,524 + GFF877 0.79 -1.3
866,524 + GFF877 0.79 -0.6
866,525 - GFF877 0.79 -1.8
866,526 - GFF877 0.79 -2.3
866,532 - GFF877 0.80 -2.1
866,532 - GFF877 0.80 -1.9
866,532 - GFF877 0.80 -1.1
866,532 - GFF877 0.80 -1.3
866,577 - GFF877 0.88 -1.8
866,651 + +0.9
866,659 - -1.1
866,661 + -0.8
866,661 + -1.8
866,683 + -0.5
866,684 + +1.2
866,726 - -1.4
866,727 + -3.0
866,756 - -1.4
866,758 + -1.8
866,815 - -1.2
866,825 - -1.3
866,825 - -1.7
866,840 + -1.4
866,910 + -0.8
866,910 + -1.1
866,918 - -2.2
866,949 + -1.5
867,023 + -0.3
867,023 + -2.1
867,031 - GFF878 0.10 -0.8
867,031 - GFF878 0.10 -1.5

Or see this region's nucleotide sequence