Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF843 and GFF844 are separated by 819 nucleotides GFF844 and GFF845 are separated by 273 nucleotides GFF845 and GFF846 overlap by 4 nucleotides
GFF843 - hypothetical protein, at 828,817 to 829,125
GFF843
GFF844 - hypothetical protein, at 829,945 to 830,247
GFF844
GFF845 - RlgA, at 830,521 to 831,075
GFF845
GFF846 - hypothetical protein, at 831,072 to 831,560
GFF846
Position (kb) 829
830
831 Strain fitness (log2 ratio) -2
-1
0
1
2 at 828.962 kb on - strand, within GFF843 at 828.986 kb on - strand, within GFF843 at 828.990 kb on + strand, within GFF843 at 828.998 kb on - strand, within GFF843 at 829.002 kb on + strand, within GFF843 at 829.008 kb on + strand, within GFF843 at 829.045 kb on + strand, within GFF843 at 829.050 kb on + strand, within GFF843 at 829.053 kb on - strand, within GFF843 at 829.063 kb on - strand, within GFF843 at 829.067 kb on + strand, within GFF843 at 829.069 kb on + strand, within GFF843 at 829.077 kb on - strand, within GFF843 at 829.077 kb on - strand, within GFF843 at 829.085 kb on + strand, within GFF843 at 829.085 kb on - strand, within GFF843 at 829.085 kb on - strand, within GFF843 at 829.085 kb on - strand, within GFF843 at 829.091 kb on + strand, within GFF843 at 829.099 kb on - strand at 829.178 kb on + strand at 829.216 kb on + strand at 829.221 kb on + strand at 829.230 kb on - strand at 829.239 kb on + strand at 829.253 kb on + strand at 829.253 kb on - strand at 829.253 kb on - strand at 829.253 kb on - strand at 829.253 kb on - strand at 829.255 kb on + strand at 829.255 kb on + strand at 829.255 kb on + strand at 829.255 kb on + strand at 829.263 kb on - strand at 829.263 kb on - strand at 829.263 kb on - strand at 829.263 kb on - strand at 829.289 kb on - strand at 829.309 kb on + strand at 829.310 kb on + strand at 829.310 kb on + strand at 829.336 kb on + strand at 829.336 kb on + strand at 829.336 kb on + strand at 829.336 kb on + strand at 829.336 kb on + strand at 829.344 kb on - strand at 829.344 kb on - strand at 829.344 kb on - strand at 829.344 kb on - strand at 829.344 kb on - strand at 829.344 kb on - strand at 829.344 kb on - strand at 829.347 kb on + strand at 829.347 kb on + strand at 829.353 kb on - strand at 829.355 kb on - strand at 829.376 kb on + strand at 829.376 kb on + strand at 829.379 kb on - strand at 829.381 kb on + strand at 829.384 kb on - strand at 829.403 kb on + strand at 829.413 kb on + strand at 829.413 kb on + strand at 829.421 kb on - strand at 829.421 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.460 kb on + strand at 829.460 kb on + strand at 829.460 kb on + strand at 829.468 kb on + strand at 829.468 kb on - strand at 829.521 kb on + strand at 829.521 kb on + strand at 829.521 kb on + strand at 829.527 kb on - strand at 829.585 kb on + strand at 829.585 kb on + strand at 829.593 kb on - strand at 829.603 kb on - strand at 829.619 kb on + strand at 829.627 kb on - strand at 829.629 kb on + strand at 829.629 kb on + strand at 829.629 kb on + strand at 829.637 kb on - strand at 829.637 kb on - strand at 829.696 kb on + strand at 829.701 kb on + strand at 829.701 kb on + strand at 829.704 kb on - strand at 829.709 kb on - strand at 829.709 kb on - strand at 829.714 kb on - strand at 829.714 kb on - strand at 829.724 kb on - strand at 829.728 kb on - strand at 829.755 kb on - strand at 829.780 kb on + strand at 829.788 kb on - strand at 829.795 kb on + strand at 829.795 kb on + strand at 829.803 kb on - strand at 829.803 kb on - strand at 829.816 kb on + strand at 829.825 kb on + strand at 829.825 kb on + strand at 829.833 kb on - strand at 829.833 kb on - strand at 829.833 kb on - strand at 829.852 kb on + strand at 829.855 kb on - strand at 829.855 kb on - strand at 829.857 kb on + strand at 829.857 kb on + strand at 829.865 kb on - strand at 829.865 kb on - strand at 829.901 kb on + strand at 829.906 kb on + strand at 829.906 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.911 kb on + strand at 829.914 kb on - strand at 829.914 kb on - strand at 829.914 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.919 kb on - strand at 829.943 kb on + strand at 829.943 kb on + strand at 829.951 kb on - strand at 829.951 kb on - strand at 829.951 kb on - strand at 829.976 kb on - strand, within GFF844 at 830.029 kb on - strand, within GFF844 at 830.029 kb on - strand, within GFF844 at 830.044 kb on + strand, within GFF844 at 830.044 kb on + strand, within GFF844 at 830.044 kb on + strand, within GFF844 at 830.044 kb on + strand, within GFF844 at 830.047 kb on - strand, within GFF844 at 830.052 kb on - strand, within GFF844 at 830.052 kb on - strand, within GFF844 at 830.052 kb on - strand, within GFF844 at 830.085 kb on - strand, within GFF844 at 830.115 kb on + strand, within GFF844 at 830.126 kb on - strand, within GFF844 at 830.129 kb on - strand, within GFF844 at 830.136 kb on - strand, within GFF844 at 830.145 kb on + strand, within GFF844 at 830.158 kb on - strand, within GFF844 at 830.158 kb on - strand, within GFF844 at 830.169 kb on + strand, within GFF844 at 830.177 kb on - strand, within GFF844 at 830.177 kb on - strand, within GFF844 at 830.177 kb on - strand, within GFF844 at 830.177 kb on - strand, within GFF844 at 830.177 kb on - strand, within GFF844 at 830.205 kb on - strand, within GFF844 at 830.234 kb on + strand at 830.245 kb on + strand at 830.245 kb on + strand at 830.245 kb on + strand at 830.245 kb on + strand at 830.245 kb on + strand at 830.245 kb on + strand at 830.245 kb on + strand at 830.251 kb on - strand at 830.253 kb on - strand at 830.253 kb on - strand at 830.253 kb on - strand at 830.253 kb on - strand at 830.253 kb on - strand at 830.253 kb on - strand at 830.334 kb on + strand at 830.334 kb on + strand at 830.337 kb on - strand at 830.342 kb on - strand at 830.347 kb on - strand at 830.371 kb on + strand at 830.371 kb on + strand at 830.397 kb on + strand at 830.403 kb on + strand at 830.411 kb on - strand at 830.411 kb on - strand at 830.411 kb on - strand at 830.411 kb on - strand at 830.423 kb on + strand at 830.431 kb on - strand at 830.431 kb on - strand at 830.455 kb on - strand at 830.489 kb on + strand at 830.489 kb on + strand at 830.489 kb on + strand at 830.490 kb on + strand at 830.490 kb on + strand at 830.490 kb on + strand at 830.490 kb on + strand at 830.497 kb on - strand at 830.497 kb on - strand at 830.498 kb on - strand at 830.498 kb on - strand at 830.498 kb on - strand at 830.498 kb on - strand at 830.498 kb on - strand at 830.498 kb on - strand at 830.498 kb on - strand at 830.511 kb on + strand at 830.511 kb on + strand at 830.530 kb on + strand at 830.537 kb on + strand at 830.537 kb on + strand at 830.542 kb on + strand at 830.542 kb on + strand at 830.545 kb on - strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.547 kb on + strand at 830.550 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.555 kb on - strand at 830.577 kb on - strand, within GFF845 at 830.647 kb on + strand, within GFF845 at 830.647 kb on + strand, within GFF845 at 830.647 kb on - strand, within GFF845 at 830.658 kb on + strand, within GFF845 at 830.684 kb on + strand, within GFF845 at 830.699 kb on + strand, within GFF845 at 830.702 kb on - strand, within GFF845 at 830.702 kb on - strand, within GFF845 at 830.731 kb on + strand, within GFF845 at 830.731 kb on + strand, within GFF845 at 830.806 kb on - strand, within GFF845 at 830.815 kb on + strand, within GFF845 at 830.824 kb on + strand, within GFF845 at 830.825 kb on + strand, within GFF845 at 830.829 kb on + strand, within GFF845 at 830.859 kb on + strand, within GFF845 at 830.868 kb on + strand, within GFF845 at 830.916 kb on + strand, within GFF845 at 830.931 kb on + strand, within GFF845 at 830.931 kb on + strand, within GFF845 at 830.931 kb on + strand, within GFF845 at 830.931 kb on + strand, within GFF845 at 830.939 kb on - strand, within GFF845 at 830.943 kb on + strand, within GFF845 at 830.964 kb on + strand, within GFF845 at 830.977 kb on - strand, within GFF845 at 831.038 kb on - strand at 831.045 kb on + strand at 831.045 kb on + strand at 831.047 kb on + strand at 831.058 kb on - strand at 831.082 kb on - strand at 831.111 kb on + strand at 831.112 kb on - strand at 831.119 kb on - strand at 831.119 kb on - strand at 831.145 kb on + strand, within GFF846 at 831.149 kb on + strand, within GFF846 at 831.153 kb on - strand, within GFF846 at 831.157 kb on + strand, within GFF846 at 831.179 kb on + strand, within GFF846 at 831.179 kb on + strand, within GFF846 at 831.179 kb on + strand, within GFF846 at 831.179 kb on + strand, within GFF846 at 831.180 kb on + strand, within GFF846 at 831.187 kb on - strand, within GFF846 at 831.187 kb on - strand, within GFF846 at 831.187 kb on - strand, within GFF846 at 831.204 kb on - strand, within GFF846 at 831.204 kb on - strand, within GFF846 at 831.204 kb on - strand, within GFF846 at 831.246 kb on - strand, within GFF846
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 828,962 - GFF843 0.47 -0.3 828,986 - GFF843 0.55 -0.1 828,990 + GFF843 0.56 -0.7 828,998 - GFF843 0.59 +0.3 829,002 + GFF843 0.60 -1.1 829,008 + GFF843 0.62 +1.1 829,045 + GFF843 0.74 -0.6 829,050 + GFF843 0.75 -1.2 829,053 - GFF843 0.76 -0.0 829,063 - GFF843 0.80 -0.1 829,067 + GFF843 0.81 -1.3 829,069 + GFF843 0.82 -1.4 829,077 - GFF843 0.84 -0.1 829,077 - GFF843 0.84 +0.2 829,085 + GFF843 0.87 -0.1 829,085 - GFF843 0.87 +2.3 829,085 - GFF843 0.87 +0.2 829,085 - GFF843 0.87 -0.1 829,091 + GFF843 0.89 -0.5 829,099 - -0.4 829,178 + -0.0 829,216 + -0.4 829,221 + -1.8 829,230 - -0.2 829,239 + -0.4 829,253 + -0.5 829,253 - -0.9 829,253 - -0.8 829,253 - +0.3 829,253 - +0.2 829,255 + -0.1 829,255 + -2.1 829,255 + +0.7 829,255 + +0.1 829,263 - +0.4 829,263 - +0.6 829,263 - -0.3 829,263 - +0.3 829,289 - -0.2 829,309 + +0.1 829,310 + +0.1 829,310 + +1.2 829,336 + -2.2 829,336 + -1.5 829,336 + +0.7 829,336 + -0.3 829,336 + +0.0 829,344 - -0.3 829,344 - +0.9 829,344 - +0.5 829,344 - +0.7 829,344 - +0.1 829,344 - -0.4 829,344 - +0.7 829,347 + +1.3 829,347 + +0.1 829,353 - -0.7 829,355 - +0.2 829,376 + -0.7 829,376 + -1.5 829,379 - +0.2 829,381 + +0.1 829,384 - -0.7 829,403 + +0.9 829,413 + -1.7 829,413 + -1.4 829,421 - +1.1 829,421 - +0.6 829,458 - -0.8 829,458 - -1.2 829,460 + -0.0 829,460 + +2.2 829,460 + +0.4 829,468 + +0.7 829,468 - -0.5 829,521 + -0.4 829,521 + -1.4 829,521 + -0.5 829,527 - +1.2 829,585 + +0.4 829,585 + -0.4 829,593 - -1.5 829,603 - -1.8 829,619 + -1.9 829,627 - +0.7 829,629 + -0.8 829,629 + +0.2 829,629 + -2.1 829,637 - +0.5 829,637 - -1.0 829,696 + -1.6 829,701 + +0.7 829,701 + -0.8 829,704 - +0.1 829,709 - -2.3 829,709 - +0.1 829,714 - -0.7 829,714 - -1.3 829,724 - -0.6 829,728 - +0.3 829,755 - -1.0 829,780 + +1.3 829,788 - +1.2 829,795 + +1.0 829,795 + +0.1 829,803 - +1.0 829,803 - +1.4 829,816 + -1.1 829,825 + -2.1 829,825 + -1.1 829,833 - -0.6 829,833 - -0.5 829,833 - +0.6 829,852 + +1.4 829,855 - +0.8 829,855 - -1.1 829,857 + -0.7 829,857 + -0.2 829,865 - -1.1 829,865 - +0.5 829,901 + -1.4 829,906 + -0.3 829,906 + -0.7 829,911 + -1.7 829,911 + -0.8 829,911 + -1.5 829,911 + -1.3 829,911 + -1.0 829,911 + -0.1 829,911 + -2.5 829,911 + -1.4 829,911 + -2.7 829,911 + +0.6 829,911 + +0.4 829,911 + -0.1 829,911 + +0.2 829,911 + -2.5 829,911 + +0.8 829,911 + +0.8 829,911 + +0.3 829,914 - -1.0 829,914 - -2.1 829,914 - -0.0 829,919 - -0.7 829,919 - +0.6 829,919 - -0.0 829,919 - +1.0 829,919 - -0.8 829,919 - -1.0 829,919 - -0.2 829,919 - +0.1 829,919 - +0.2 829,919 - -1.8 829,919 - -1.0 829,919 - +0.1 829,919 - +0.4 829,919 - +0.9 829,919 - -1.3 829,919 - +0.9 829,919 - -0.9 829,919 - -1.0 829,919 - -1.0 829,919 - +0.7 829,919 - -1.4 829,919 - -0.3 829,919 - +0.3 829,919 - +0.7 829,919 - -0.0 829,919 - +0.7 829,919 - -0.4 829,919 - -1.3 829,919 - -2.0 829,919 - -0.2 829,919 - -1.1 829,919 - -0.9 829,943 + -0.1 829,943 + -1.7 829,951 - +1.2 829,951 - +1.2 829,951 - +0.3 829,976 - GFF844 0.10 +0.5 830,029 - GFF844 0.28 -1.2 830,029 - GFF844 0.28 -0.2 830,044 + GFF844 0.33 -2.4 830,044 + GFF844 0.33 +0.7 830,044 + GFF844 0.33 -0.1 830,044 + GFF844 0.33 -1.6 830,047 - GFF844 0.34 +1.6 830,052 - GFF844 0.35 -0.2 830,052 - GFF844 0.35 -0.1 830,052 - GFF844 0.35 +1.4 830,085 - GFF844 0.46 -1.8 830,115 + GFF844 0.56 -0.1 830,126 - GFF844 0.60 +0.9 830,129 - GFF844 0.61 -1.7 830,136 - GFF844 0.63 +0.5 830,145 + GFF844 0.66 +0.1 830,158 - GFF844 0.70 -0.1 830,158 - GFF844 0.70 -0.6 830,169 + GFF844 0.74 +0.9 830,177 - GFF844 0.77 +1.2 830,177 - GFF844 0.77 -1.2 830,177 - GFF844 0.77 -0.5 830,177 - GFF844 0.77 -1.6 830,177 - GFF844 0.77 -2.2 830,205 - GFF844 0.86 +0.7 830,234 + -1.4 830,245 + +0.2 830,245 + -0.3 830,245 + -2.0 830,245 + -1.5 830,245 + +0.2 830,245 + -1.4 830,245 + +1.5 830,251 - +0.7 830,253 - -0.2 830,253 - -0.6 830,253 - +0.2 830,253 - +0.4 830,253 - +1.3 830,253 - -0.5 830,334 + -1.0 830,334 + +0.5 830,337 - +0.6 830,342 - -0.1 830,347 - +0.5 830,371 + +2.3 830,371 + -0.6 830,397 + -1.7 830,403 + +1.1 830,411 - +0.6 830,411 - -1.7 830,411 - +0.1 830,411 - -0.9 830,423 + +0.4 830,431 - +0.1 830,431 - +1.1 830,455 - -0.1 830,489 + -0.1 830,489 + +0.9 830,489 + -0.3 830,490 + +0.6 830,490 + -1.4 830,490 + +0.2 830,490 + -0.8 830,497 - -1.8 830,497 - -0.7 830,498 - -0.4 830,498 - +0.6 830,498 - +0.9 830,498 - -0.3 830,498 - -0.6 830,498 - -0.6 830,498 - -0.8 830,511 + -1.0 830,511 + +0.1 830,530 + +0.5 830,537 + -0.2 830,537 + -0.8 830,542 + -0.9 830,542 + +1.1 830,545 - +1.4 830,547 + +1.1 830,547 + -0.7 830,547 + -2.3 830,547 + -0.1 830,547 + -1.7 830,547 + -0.6 830,547 + +0.3 830,547 + +1.7 830,547 + +0.5 830,547 + +0.5 830,547 + -0.2 830,547 + +1.1 830,547 + -1.1 830,547 + +1.0 830,547 + +0.8 830,547 + -1.1 830,547 + -0.4 830,547 + +0.4 830,547 + +0.9 830,547 + -0.6 830,547 + -0.6 830,547 + -0.4 830,550 - -0.0 830,555 - +1.0 830,555 - +1.6 830,555 - +0.1 830,555 - -0.8 830,555 - +0.3 830,555 - -1.8 830,555 - -2.7 830,555 - +0.1 830,555 - +0.1 830,555 - -0.6 830,555 - -1.5 830,555 - -0.4 830,555 - +0.7 830,555 - +0.1 830,555 - -1.5 830,555 - -0.3 830,555 - -0.8 830,555 - +1.3 830,577 - GFF845 0.10 -2.0 830,647 + GFF845 0.23 +0.5 830,647 + GFF845 0.23 -0.3 830,647 - GFF845 0.23 -0.4 830,658 + GFF845 0.25 -1.2 830,684 + GFF845 0.29 -0.2 830,699 + GFF845 0.32 +0.3 830,702 - GFF845 0.33 -0.7 830,702 - GFF845 0.33 -1.4 830,731 + GFF845 0.38 -0.3 830,731 + GFF845 0.38 +1.4 830,806 - GFF845 0.51 -0.8 830,815 + GFF845 0.53 +1.2 830,824 + GFF845 0.55 +0.7 830,825 + GFF845 0.55 -1.4 830,829 + GFF845 0.55 +0.8 830,859 + GFF845 0.61 -0.7 830,868 + GFF845 0.63 +0.1 830,916 + GFF845 0.71 -1.7 830,931 + GFF845 0.74 -0.1 830,931 + GFF845 0.74 -0.1 830,931 + GFF845 0.74 -0.2 830,931 + GFF845 0.74 -1.0 830,939 - GFF845 0.75 +0.5 830,943 + GFF845 0.76 -0.0 830,964 + GFF845 0.80 -0.2 830,977 - GFF845 0.82 -1.4 831,038 - -0.0 831,045 + -0.8 831,045 + -0.4 831,047 + -1.3 831,058 - -1.4 831,082 - +0.1 831,111 + +0.2 831,112 - -1.2 831,119 - +0.1 831,119 - +0.4 831,145 + GFF846 0.15 -1.7 831,149 + GFF846 0.16 -1.3 831,153 - GFF846 0.17 -0.0 831,157 + GFF846 0.17 -0.9 831,179 + GFF846 0.22 -1.4 831,179 + GFF846 0.22 -0.8 831,179 + GFF846 0.22 -1.5 831,179 + GFF846 0.22 +0.7 831,180 + GFF846 0.22 -2.2 831,187 - GFF846 0.24 -1.2 831,187 - GFF846 0.24 -0.5 831,187 - GFF846 0.24 +1.2 831,204 - GFF846 0.27 -0.5 831,204 - GFF846 0.27 +0.6 831,204 - GFF846 0.27 -0.9 831,246 - GFF846 0.36 +1.5
Or see this region's nucleotide sequence