Strain Fitness in Sphingobium sp. HT1-2 around GFF819

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF818 and GFF819 are separated by 142 nucleotidesGFF819 and GFF820 are separated by 111 nucleotides GFF818 - Phosphoserine aminotransferase (EC 2.6.1.52), at 807,532 to 808,695 GFF818 GFF819 - RNA binding S1 domain protein, at 808,838 to 809,554 GFF819 GFF820 - hypothetical protein, at 809,666 to 810,544 GFF820 Position (kb) 808 809 810Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 807.882 kb on + strand, within GFF818at 807.949 kb on - strand, within GFF818at 807.949 kb on - strand, within GFF818at 807.970 kb on - strand, within GFF818at 807.976 kb on - strand, within GFF818at 807.989 kb on + strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 808.058 kb on - strand, within GFF818at 808.104 kb on - strand, within GFF818at 808.109 kb on + strand, within GFF818at 808.117 kb on - strand, within GFF818at 808.138 kb on + strand, within GFF818at 808.146 kb on - strand, within GFF818at 808.146 kb on - strand, within GFF818at 808.146 kb on - strand, within GFF818at 808.195 kb on - strand, within GFF818at 808.218 kb on + strand, within GFF818at 808.218 kb on + strand, within GFF818at 808.226 kb on - strand, within GFF818at 808.271 kb on - strand, within GFF818at 808.309 kb on - strand, within GFF818at 808.311 kb on + strand, within GFF818at 808.322 kb on + strand, within GFF818at 808.330 kb on - strand, within GFF818at 808.330 kb on - strand, within GFF818at 808.330 kb on - strand, within GFF818at 808.340 kb on - strand, within GFF818at 808.340 kb on - strand, within GFF818at 808.340 kb on - strand, within GFF818at 808.412 kb on - strand, within GFF818at 808.469 kb on + strand, within GFF818at 808.472 kb on - strand, within GFF818at 808.477 kb on - strand, within GFF818at 808.477 kb on - strand, within GFF818at 808.588 kb on + strandat 808.595 kb on + strandat 808.596 kb on - strandat 808.597 kb on - strandat 808.647 kb on - strandat 808.689 kb on - strandat 808.694 kb on - strandat 808.706 kb on + strandat 808.708 kb on + strandat 808.714 kb on - strandat 808.714 kb on - strandat 808.727 kb on + strandat 808.727 kb on + strandat 808.736 kb on - strandat 808.754 kb on + strandat 808.755 kb on + strandat 808.835 kb on + strandat 808.852 kb on + strandat 808.893 kb on + strandat 808.893 kb on + strandat 808.898 kb on + strandat 808.906 kb on - strandat 808.974 kb on + strand, within GFF819at 808.982 kb on - strand, within GFF819at 808.992 kb on + strand, within GFF819at 808.993 kb on - strand, within GFF819at 808.997 kb on + strand, within GFF819at 808.997 kb on + strand, within GFF819at 808.999 kb on + strand, within GFF819at 809.001 kb on + strand, within GFF819at 809.001 kb on + strand, within GFF819at 809.005 kb on - strand, within GFF819at 809.009 kb on - strand, within GFF819at 809.009 kb on - strand, within GFF819at 809.009 kb on - strand, within GFF819at 809.034 kb on - strand, within GFF819at 809.036 kb on + strand, within GFF819at 809.053 kb on + strand, within GFF819at 809.059 kb on + strand, within GFF819at 809.059 kb on + strand, within GFF819at 809.067 kb on - strand, within GFF819at 809.073 kb on + strand, within GFF819at 809.105 kb on + strand, within GFF819at 809.127 kb on + strand, within GFF819at 809.135 kb on - strand, within GFF819at 809.135 kb on - strand, within GFF819at 809.135 kb on - strand, within GFF819at 809.135 kb on - strand, within GFF819at 809.142 kb on + strand, within GFF819at 809.145 kb on - strand, within GFF819at 809.158 kb on - strand, within GFF819at 809.165 kb on - strand, within GFF819at 809.165 kb on - strand, within GFF819at 809.165 kb on - strand, within GFF819at 809.170 kb on - strand, within GFF819at 809.179 kb on - strand, within GFF819at 809.212 kb on + strand, within GFF819at 809.217 kb on + strand, within GFF819at 809.217 kb on + strand, within GFF819at 809.217 kb on + strand, within GFF819at 809.217 kb on + strand, within GFF819at 809.219 kb on + strand, within GFF819at 809.220 kb on - strand, within GFF819at 809.225 kb on - strand, within GFF819at 809.225 kb on - strand, within GFF819at 809.225 kb on - strand, within GFF819at 809.225 kb on - strand, within GFF819at 809.225 kb on - strand, within GFF819at 809.225 kb on - strand, within GFF819at 809.227 kb on - strand, within GFF819at 809.227 kb on - strand, within GFF819at 809.235 kb on - strand, within GFF819at 809.239 kb on + strand, within GFF819at 809.250 kb on - strand, within GFF819at 809.266 kb on + strand, within GFF819at 809.266 kb on + strand, within GFF819at 809.310 kb on + strand, within GFF819at 809.317 kb on + strand, within GFF819at 809.317 kb on + strand, within GFF819at 809.317 kb on + strand, within GFF819at 809.325 kb on - strand, within GFF819at 809.330 kb on + strand, within GFF819at 809.338 kb on - strand, within GFF819at 809.338 kb on - strand, within GFF819at 809.359 kb on - strand, within GFF819at 809.362 kb on + strand, within GFF819at 809.371 kb on - strand, within GFF819at 809.383 kb on + strand, within GFF819at 809.388 kb on + strand, within GFF819at 809.391 kb on - strand, within GFF819at 809.398 kb on + strand, within GFF819at 809.398 kb on + strand, within GFF819at 809.398 kb on + strand, within GFF819at 809.398 kb on + strand, within GFF819at 809.409 kb on - strand, within GFF819at 809.409 kb on - strand, within GFF819at 809.441 kb on + strand, within GFF819at 809.441 kb on + strand, within GFF819at 809.449 kb on - strand, within GFF819at 809.449 kb on - strand, within GFF819at 809.449 kb on - strand, within GFF819at 809.449 kb on - strand, within GFF819at 809.449 kb on - strand, within GFF819at 809.449 kb on - strand, within GFF819at 809.449 kb on - strand, within GFF819at 809.449 kb on - strand, within GFF819at 809.453 kb on - strand, within GFF819at 809.462 kb on + strand, within GFF819at 809.462 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.464 kb on + strand, within GFF819at 809.469 kb on + strand, within GFF819at 809.469 kb on + strand, within GFF819at 809.469 kb on + strand, within GFF819at 809.469 kb on + strand, within GFF819at 809.469 kb on + strand, within GFF819at 809.470 kb on - strand, within GFF819at 809.472 kb on + strand, within GFF819at 809.472 kb on - strand, within GFF819at 809.472 kb on - strand, within GFF819at 809.472 kb on - strand, within GFF819at 809.472 kb on - strand, within GFF819at 809.472 kb on - strand, within GFF819at 809.472 kb on - strand, within GFF819at 809.472 kb on - strand, within GFF819at 809.472 kb on - strand, within GFF819at 809.472 kb on - strand, within GFF819at 809.477 kb on - strand, within GFF819at 809.477 kb on - strand, within GFF819at 809.477 kb on - strand, within GFF819at 809.477 kb on - strand, within GFF819at 809.477 kb on - strand, within GFF819at 809.488 kb on + strandat 809.488 kb on + strandat 809.488 kb on + strandat 809.488 kb on + strandat 809.488 kb on + strandat 809.488 kb on + strandat 809.495 kb on - strandat 809.496 kb on - strandat 809.496 kb on - strandat 809.496 kb on - strandat 809.555 kb on + strandat 809.557 kb on - strandat 809.597 kb on + strandat 809.627 kb on + strandat 809.703 kb on + strandat 809.735 kb on - strandat 809.747 kb on + strandat 809.747 kb on + strandat 809.760 kb on - strand, within GFF820at 809.842 kb on + strand, within GFF820at 809.901 kb on + strand, within GFF820at 809.914 kb on - strand, within GFF820at 809.937 kb on - strand, within GFF820at 809.968 kb on + strand, within GFF820at 810.109 kb on - strand, within GFF820at 810.148 kb on + strand, within GFF820at 810.207 kb on + strand, within GFF820at 810.305 kb on - strand, within GFF820at 810.333 kb on + strand, within GFF820at 810.337 kb on + strand, within GFF820at 810.341 kb on - strand, within GFF820at 810.341 kb on - strand, within GFF820at 810.458 kb on + strandat 810.463 kb on + strandat 810.466 kb on - strandat 810.487 kb on + strandat 810.500 kb on + strandat 810.500 kb on + strandat 810.500 kb on + strandat 810.534 kb on + strandat 810.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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807,882 + GFF818 0.30 -1.9
807,949 - GFF818 0.36 -1.3
807,949 - GFF818 0.36 -2.1
807,970 - GFF818 0.38 -1.5
807,976 - GFF818 0.38 -1.3
807,989 + GFF818 0.39 -1.1
807,997 - GFF818 0.40 -1.6
807,997 - GFF818 0.40 -1.9
807,997 - GFF818 0.40 -2.3
807,997 - GFF818 0.40 -3.8
807,997 - GFF818 0.40 -1.7
808,058 - GFF818 0.45 -1.1
808,104 - GFF818 0.49 -1.5
808,109 + GFF818 0.50 -1.5
808,117 - GFF818 0.50 -2.3
808,138 + GFF818 0.52 -1.9
808,146 - GFF818 0.53 -1.4
808,146 - GFF818 0.53 -1.9
808,146 - GFF818 0.53 -2.8
808,195 - GFF818 0.57 -1.3
808,218 + GFF818 0.59 -2.5
808,218 + GFF818 0.59 -0.3
808,226 - GFF818 0.60 -1.5
808,271 - GFF818 0.63 -1.3
808,309 - GFF818 0.67 -1.5
808,311 + GFF818 0.67 -1.6
808,322 + GFF818 0.68 -1.1
808,330 - GFF818 0.69 -1.4
808,330 - GFF818 0.69 -1.7
808,330 - GFF818 0.69 -1.6
808,340 - GFF818 0.69 -2.5
808,340 - GFF818 0.69 -1.1
808,340 - GFF818 0.69 -1.4
808,412 - GFF818 0.76 -0.9
808,469 + GFF818 0.80 -1.9
808,472 - GFF818 0.81 -2.8
808,477 - GFF818 0.81 -1.4
808,477 - GFF818 0.81 -1.3
808,588 + -1.4
808,595 + -1.7
808,596 - +0.3
808,597 - -2.1
808,647 - -1.3
808,689 - -0.6
808,694 - -3.3
808,706 + -1.1
808,708 + +0.2
808,714 - +0.5
808,714 - -2.1
808,727 + -1.7
808,727 + -1.5
808,736 - +0.1
808,754 + -1.3
808,755 + -2.0
808,835 + -0.3
808,852 + +1.3
808,893 + -0.4
808,893 + +0.5
808,898 + -0.5
808,906 - -0.7
808,974 + GFF819 0.19 -0.0
808,982 - GFF819 0.20 -1.5
808,992 + GFF819 0.21 +0.4
808,993 - GFF819 0.22 -0.6
808,997 + GFF819 0.22 +0.1
808,997 + GFF819 0.22 -1.1
808,999 + GFF819 0.22 +0.1
809,001 + GFF819 0.23 -0.8
809,001 + GFF819 0.23 -0.9
809,005 - GFF819 0.23 +0.6
809,009 - GFF819 0.24 -1.1
809,009 - GFF819 0.24 +0.0
809,009 - GFF819 0.24 +0.5
809,034 - GFF819 0.27 +0.2
809,036 + GFF819 0.28 -2.4
809,053 + GFF819 0.30 -1.5
809,059 + GFF819 0.31 -2.5
809,059 + GFF819 0.31 -1.1
809,067 - GFF819 0.32 -0.5
809,073 + GFF819 0.33 -0.0
809,105 + GFF819 0.37 -0.2
809,127 + GFF819 0.40 +0.9
809,135 - GFF819 0.41 -1.7
809,135 - GFF819 0.41 -1.6
809,135 - GFF819 0.41 -1.3
809,135 - GFF819 0.41 -1.1
809,142 + GFF819 0.42 -1.7
809,145 - GFF819 0.43 -0.3
809,158 - GFF819 0.45 -1.0
809,165 - GFF819 0.46 -1.3
809,165 - GFF819 0.46 -1.0
809,165 - GFF819 0.46 +0.2
809,170 - GFF819 0.46 +0.8
809,179 - GFF819 0.48 -1.3
809,212 + GFF819 0.52 +0.3
809,217 + GFF819 0.53 -1.1
809,217 + GFF819 0.53 -1.1
809,217 + GFF819 0.53 -1.6
809,217 + GFF819 0.53 -1.6
809,219 + GFF819 0.53 -0.3
809,220 - GFF819 0.53 -0.7
809,225 - GFF819 0.54 -0.8
809,225 - GFF819 0.54 -0.0
809,225 - GFF819 0.54 -0.9
809,225 - GFF819 0.54 -1.2
809,225 - GFF819 0.54 +0.1
809,225 - GFF819 0.54 -1.1
809,227 - GFF819 0.54 -0.6
809,227 - GFF819 0.54 -2.7
809,235 - GFF819 0.55 -0.5
809,239 + GFF819 0.56 -0.4
809,250 - GFF819 0.57 -1.4
809,266 + GFF819 0.60 -0.0
809,266 + GFF819 0.60 -0.1
809,310 + GFF819 0.66 -1.1
809,317 + GFF819 0.67 -0.3
809,317 + GFF819 0.67 -1.3
809,317 + GFF819 0.67 +1.3
809,325 - GFF819 0.68 -0.1
809,330 + GFF819 0.69 +1.0
809,338 - GFF819 0.70 -0.3
809,338 - GFF819 0.70 -0.7
809,359 - GFF819 0.73 +0.7
809,362 + GFF819 0.73 +0.5
809,371 - GFF819 0.74 -0.1
809,383 + GFF819 0.76 +0.6
809,388 + GFF819 0.77 -0.0
809,391 - GFF819 0.77 -1.6
809,398 + GFF819 0.78 -1.3
809,398 + GFF819 0.78 +0.2
809,398 + GFF819 0.78 -0.4
809,398 + GFF819 0.78 +0.2
809,409 - GFF819 0.80 +1.2
809,409 - GFF819 0.80 +0.2
809,441 + GFF819 0.84 +1.4
809,441 + GFF819 0.84 -1.1
809,449 - GFF819 0.85 -0.0
809,449 - GFF819 0.85 +1.0
809,449 - GFF819 0.85 -1.2
809,449 - GFF819 0.85 +0.5
809,449 - GFF819 0.85 +0.3
809,449 - GFF819 0.85 -1.3
809,449 - GFF819 0.85 -1.0
809,449 - GFF819 0.85 +0.2
809,453 - GFF819 0.86 +1.2
809,462 + GFF819 0.87 +1.4
809,462 + GFF819 0.87 +0.0
809,464 + GFF819 0.87 -1.4
809,464 + GFF819 0.87 +0.5
809,464 + GFF819 0.87 +0.9
809,464 + GFF819 0.87 +1.4
809,464 + GFF819 0.87 +0.5
809,464 + GFF819 0.87 -1.0
809,464 + GFF819 0.87 -0.2
809,464 + GFF819 0.87 +0.8
809,464 + GFF819 0.87 +0.9
809,464 + GFF819 0.87 +0.5
809,464 + GFF819 0.87 +0.5
809,464 + GFF819 0.87 +0.6
809,464 + GFF819 0.87 -1.2
809,464 + GFF819 0.87 +0.6
809,464 + GFF819 0.87 +0.5
809,464 + GFF819 0.87 -0.3
809,464 + GFF819 0.87 -0.8
809,464 + GFF819 0.87 +1.2
809,464 + GFF819 0.87 -1.8
809,464 + GFF819 0.87 -0.5
809,464 + GFF819 0.87 -1.4
809,469 + GFF819 0.88 +0.4
809,469 + GFF819 0.88 +0.6
809,469 + GFF819 0.88 +0.2
809,469 + GFF819 0.88 -1.6
809,469 + GFF819 0.88 -1.0
809,470 - GFF819 0.88 +0.3
809,472 + GFF819 0.88 +0.4
809,472 - GFF819 0.88 +1.4
809,472 - GFF819 0.88 +1.4
809,472 - GFF819 0.88 -0.1
809,472 - GFF819 0.88 -1.5
809,472 - GFF819 0.88 -1.4
809,472 - GFF819 0.88 -0.3
809,472 - GFF819 0.88 -0.3
809,472 - GFF819 0.88 -2.6
809,472 - GFF819 0.88 -1.4
809,477 - GFF819 0.89 +0.4
809,477 - GFF819 0.89 -1.6
809,477 - GFF819 0.89 -1.1
809,477 - GFF819 0.89 +0.1
809,477 - GFF819 0.89 +1.1
809,488 + +1.1
809,488 + -0.4
809,488 + -1.6
809,488 + +0.5
809,488 + +0.5
809,488 + -0.4
809,495 - -0.9
809,496 - +0.8
809,496 - +0.0
809,496 - -1.3
809,555 + +0.4
809,557 - -0.1
809,597 + -0.3
809,627 + -0.0
809,703 + -0.3
809,735 - -0.1
809,747 + +0.4
809,747 + -0.2
809,760 - GFF820 0.11 -1.2
809,842 + GFF820 0.20 -0.1
809,901 + GFF820 0.27 +0.4
809,914 - GFF820 0.28 +0.9
809,937 - GFF820 0.31 +1.2
809,968 + GFF820 0.34 -0.9
810,109 - GFF820 0.50 -1.5
810,148 + GFF820 0.55 -0.4
810,207 + GFF820 0.62 -0.2
810,305 - GFF820 0.73 -0.4
810,333 + GFF820 0.76 +0.2
810,337 + GFF820 0.76 -0.0
810,341 - GFF820 0.77 +1.2
810,341 - GFF820 0.77 +0.8
810,458 + +1.2
810,463 + -1.6
810,466 - -0.7
810,487 + +0.7
810,500 + +1.8
810,500 + -0.0
810,500 + +1.3
810,534 + -0.5
810,535 - -1.1

Or see this region's nucleotide sequence