Strain Fitness in Sphingobium sp. HT1-2 around GFF78

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF77 and GFF78 overlap by 4 nucleotidesGFF78 and GFF79 are separated by 96 nucleotides GFF77 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), plant type, at 66,473 to 67,741 GFF77 GFF78 - Putative oxidoreductase, at 67,738 to 68,454 GFF78 GFF79 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 68,551 to 70,029 GFF79 Position (kb) 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1at 66.758 kb on - strand, within GFF77at 66.763 kb on + strand, within GFF77at 66.783 kb on + strand, within GFF77at 66.783 kb on + strand, within GFF77at 66.791 kb on - strand, within GFF77at 66.791 kb on - strand, within GFF77at 66.791 kb on - strand, within GFF77at 66.791 kb on - strand, within GFF77at 66.791 kb on - strand, within GFF77at 66.794 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.819 kb on - strand, within GFF77at 66.819 kb on - strand, within GFF77at 66.819 kb on - strand, within GFF77at 66.830 kb on - strand, within GFF77at 66.850 kb on + strand, within GFF77at 66.858 kb on - strand, within GFF77at 66.944 kb on + strand, within GFF77at 66.949 kb on + strand, within GFF77at 67.014 kb on + strand, within GFF77at 67.054 kb on + strand, within GFF77at 67.072 kb on + strand, within GFF77at 67.080 kb on + strand, within GFF77at 67.080 kb on + strand, within GFF77at 67.116 kb on - strand, within GFF77at 67.131 kb on - strand, within GFF77at 67.151 kb on + strand, within GFF77at 67.191 kb on + strand, within GFF77at 67.191 kb on - strand, within GFF77at 67.222 kb on + strand, within GFF77at 67.240 kb on + strand, within GFF77at 67.243 kb on - strand, within GFF77at 67.248 kb on - strand, within GFF77at 67.248 kb on - strand, within GFF77at 67.303 kb on + strand, within GFF77at 67.311 kb on - strand, within GFF77at 67.338 kb on + strand, within GFF77at 67.518 kb on + strand, within GFF77at 67.637 kb on + strandat 67.690 kb on + strandat 67.719 kb on + strandat 67.731 kb on - strandat 67.744 kb on - strandat 67.755 kb on + strandat 67.755 kb on + strandat 67.755 kb on + strandat 67.755 kb on + strandat 67.755 kb on + strandat 67.763 kb on - strandat 67.770 kb on + strandat 67.772 kb on + strandat 67.782 kb on + strandat 67.811 kb on + strand, within GFF78at 67.829 kb on - strand, within GFF78at 67.847 kb on + strand, within GFF78at 67.853 kb on + strand, within GFF78at 67.921 kb on - strand, within GFF78at 67.929 kb on - strand, within GFF78at 68.001 kb on + strand, within GFF78at 68.084 kb on + strand, within GFF78at 68.119 kb on + strand, within GFF78at 68.199 kb on - strand, within GFF78at 68.221 kb on - strand, within GFF78at 68.265 kb on + strand, within GFF78at 68.292 kb on + strand, within GFF78at 68.310 kb on - strand, within GFF78at 68.313 kb on + strand, within GFF78at 68.351 kb on - strand, within GFF78at 68.351 kb on - strand, within GFF78at 68.373 kb on - strand, within GFF78at 68.452 kb on - strandat 68.462 kb on + strandat 68.512 kb on + strandat 68.517 kb on + strandat 68.531 kb on + strandat 68.536 kb on + strandat 68.561 kb on + strandat 68.605 kb on - strandat 68.605 kb on - strandat 68.693 kb on + strandat 68.693 kb on + strandat 68.693 kb on + strandat 68.701 kb on - strand, within GFF79at 68.706 kb on - strand, within GFF79at 68.721 kb on + strand, within GFF79at 68.721 kb on + strand, within GFF79at 68.746 kb on + strand, within GFF79at 68.798 kb on + strand, within GFF79at 68.851 kb on + strand, within GFF79at 68.859 kb on - strand, within GFF79at 68.879 kb on + strand, within GFF79at 68.892 kb on - strand, within GFF79at 68.892 kb on - strand, within GFF79at 68.904 kb on + strand, within GFF79at 68.951 kb on + strand, within GFF79at 68.951 kb on + strand, within GFF79at 68.955 kb on + strand, within GFF79at 68.955 kb on + strand, within GFF79at 68.955 kb on + strand, within GFF79at 68.959 kb on - strand, within GFF79at 68.972 kb on + strand, within GFF79at 68.980 kb on - strand, within GFF79at 68.980 kb on - strand, within GFF79at 69.021 kb on + strand, within GFF79at 69.021 kb on + strand, within GFF79at 69.046 kb on - strand, within GFF79at 69.108 kb on + strand, within GFF79at 69.111 kb on - strand, within GFF79at 69.254 kb on + strand, within GFF79at 69.262 kb on - strand, within GFF79at 69.297 kb on - strand, within GFF79at 69.354 kb on + strand, within GFF79at 69.442 kb on - strand, within GFF79

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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66,758 - GFF77 0.22 -0.9
66,763 + GFF77 0.23 -1.9
66,783 + GFF77 0.24 +0.2
66,783 + GFF77 0.24 -0.6
66,791 - GFF77 0.25 -0.9
66,791 - GFF77 0.25 +0.3
66,791 - GFF77 0.25 +0.5
66,791 - GFF77 0.25 -0.2
66,791 - GFF77 0.25 -0.5
66,794 + GFF77 0.25 -0.3
66,811 + GFF77 0.27 -1.9
66,811 + GFF77 0.27 +0.6
66,811 + GFF77 0.27 +0.7
66,811 + GFF77 0.27 -0.3
66,811 + GFF77 0.27 +0.9
66,811 + GFF77 0.27 +0.7
66,819 - GFF77 0.27 -2.2
66,819 - GFF77 0.27 +0.3
66,819 - GFF77 0.27 +0.5
66,830 - GFF77 0.28 -0.9
66,850 + GFF77 0.30 +1.0
66,858 - GFF77 0.30 +1.4
66,944 + GFF77 0.37 +0.5
66,949 + GFF77 0.38 -1.2
67,014 + GFF77 0.43 -0.1
67,054 + GFF77 0.46 +0.1
67,072 + GFF77 0.47 +1.3
67,080 + GFF77 0.48 +0.6
67,080 + GFF77 0.48 +0.1
67,116 - GFF77 0.51 -2.6
67,131 - GFF77 0.52 -0.7
67,151 + GFF77 0.53 -0.8
67,191 + GFF77 0.57 +1.2
67,191 - GFF77 0.57 -0.5
67,222 + GFF77 0.59 -0.4
67,240 + GFF77 0.60 -0.0
67,243 - GFF77 0.61 -1.5
67,248 - GFF77 0.61 +0.3
67,248 - GFF77 0.61 -1.1
67,303 + GFF77 0.65 +1.0
67,311 - GFF77 0.66 +0.9
67,338 + GFF77 0.68 -0.9
67,518 + GFF77 0.82 -1.2
67,637 + -0.9
67,690 + -1.1
67,719 + -2.3
67,731 - +0.1
67,744 - +0.6
67,755 + -0.6
67,755 + -0.4
67,755 + +0.6
67,755 + +0.8
67,755 + +0.8
67,763 - -0.3
67,770 + +0.2
67,772 + -0.9
67,782 + -0.7
67,811 + GFF78 0.10 +1.0
67,829 - GFF78 0.13 -0.0
67,847 + GFF78 0.15 -0.0
67,853 + GFF78 0.16 -2.4
67,921 - GFF78 0.26 -0.5
67,929 - GFF78 0.27 -1.7
68,001 + GFF78 0.37 -0.7
68,084 + GFF78 0.48 +0.4
68,119 + GFF78 0.53 +1.2
68,199 - GFF78 0.64 -0.8
68,221 - GFF78 0.67 -0.5
68,265 + GFF78 0.74 +0.3
68,292 + GFF78 0.77 -0.6
68,310 - GFF78 0.80 -0.2
68,313 + GFF78 0.80 +0.7
68,351 - GFF78 0.85 -0.7
68,351 - GFF78 0.85 -1.0
68,373 - GFF78 0.89 +0.3
68,452 - +0.8
68,462 + +1.2
68,512 + -0.3
68,517 + -0.6
68,531 + +0.0
68,536 + +1.6
68,561 + +0.6
68,605 - -1.5
68,605 - -1.0
68,693 + -2.6
68,693 + -1.2
68,693 + -2.4
68,701 - GFF79 0.10 -0.8
68,706 - GFF79 0.10 -0.7
68,721 + GFF79 0.11 -1.8
68,721 + GFF79 0.11 -3.1
68,746 + GFF79 0.13 -1.7
68,798 + GFF79 0.17 -2.6
68,851 + GFF79 0.20 -2.1
68,859 - GFF79 0.21 -2.4
68,879 + GFF79 0.22 -0.4
68,892 - GFF79 0.23 -3.4
68,892 - GFF79 0.23 +0.8
68,904 + GFF79 0.24 -0.9
68,951 + GFF79 0.27 -0.3
68,951 + GFF79 0.27 -0.6
68,955 + GFF79 0.27 -1.6
68,955 + GFF79 0.27 -2.5
68,955 + GFF79 0.27 -1.3
68,959 - GFF79 0.28 -2.3
68,972 + GFF79 0.28 -2.0
68,980 - GFF79 0.29 -2.1
68,980 - GFF79 0.29 +0.4
69,021 + GFF79 0.32 -2.4
69,021 + GFF79 0.32 -2.0
69,046 - GFF79 0.33 -2.3
69,108 + GFF79 0.38 -1.0
69,111 - GFF79 0.38 -2.8
69,254 + GFF79 0.48 -1.1
69,262 - GFF79 0.48 -3.6
69,297 - GFF79 0.50 -2.2
69,354 + GFF79 0.54 -1.9
69,442 - GFF79 0.60 -2.7

Or see this region's nucleotide sequence