Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF69 and GFF70 are separated by 123 nucleotides GFF70 and GFF71 are separated by 29 nucleotides GFF71 and GFF72 overlap by 4 nucleotides
GFF69 - putative PAS/PAC sensor protein, at 58,609 to 59,517
GFF69
GFF70 - hypothetical protein, at 59,641 to 59,862
GFF70
GFF71 - Succinylarginine dihydrolase (EC 3.5.3.23), at 59,892 to 61,151
GFF71
GFF72 - Arginine N-succinyltransferase (EC 2.3.1.109), at 61,148 to 62,155
GFF72
Position (kb) 59
60
61
62 Strain fitness (log2 ratio) -2
-1
0
1
2 at 58.929 kb on + strand, within GFF69 at 58.973 kb on - strand, within GFF69 at 59.037 kb on + strand, within GFF69 at 59.045 kb on - strand, within GFF69 at 59.064 kb on - strand, within GFF69 at 59.173 kb on - strand, within GFF69 at 59.197 kb on - strand, within GFF69 at 59.231 kb on + strand, within GFF69 at 59.231 kb on + strand, within GFF69 at 59.231 kb on + strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.249 kb on + strand, within GFF69 at 59.254 kb on + strand, within GFF69 at 59.254 kb on + strand, within GFF69 at 59.254 kb on + strand, within GFF69 at 59.262 kb on - strand, within GFF69 at 59.289 kb on - strand, within GFF69 at 59.296 kb on - strand, within GFF69 at 59.308 kb on - strand, within GFF69 at 59.349 kb on + strand, within GFF69 at 59.357 kb on - strand, within GFF69 at 59.366 kb on + strand, within GFF69 at 59.366 kb on + strand, within GFF69 at 59.366 kb on + strand, within GFF69 at 59.374 kb on - strand, within GFF69 at 59.374 kb on - strand, within GFF69 at 59.374 kb on - strand, within GFF69 at 59.375 kb on - strand, within GFF69 at 59.377 kb on + strand, within GFF69 at 59.377 kb on + strand, within GFF69 at 59.377 kb on + strand, within GFF69 at 59.377 kb on + strand, within GFF69 at 59.384 kb on - strand, within GFF69 at 59.385 kb on - strand, within GFF69 at 59.394 kb on - strand, within GFF69 at 59.400 kb on - strand, within GFF69 at 59.427 kb on - strand at 59.475 kb on + strand at 59.517 kb on + strand at 59.518 kb on + strand at 59.526 kb on - strand at 59.526 kb on - strand at 59.526 kb on - strand at 59.526 kb on - strand at 59.526 kb on - strand at 59.556 kb on - strand at 59.640 kb on + strand at 59.736 kb on - strand, within GFF70 at 59.767 kb on - strand, within GFF70 at 59.846 kb on + strand at 59.859 kb on + strand at 59.897 kb on + strand at 59.933 kb on + strand at 59.982 kb on + strand at 60.004 kb on + strand at 60.020 kb on - strand, within GFF71 at 60.068 kb on + strand, within GFF71 at 60.101 kb on + strand, within GFF71 at 60.101 kb on + strand, within GFF71 at 60.104 kb on - strand, within GFF71 at 60.194 kb on + strand, within GFF71 at 60.194 kb on + strand, within GFF71 at 60.194 kb on + strand, within GFF71 at 60.199 kb on + strand, within GFF71 at 60.199 kb on + strand, within GFF71 at 60.199 kb on + strand, within GFF71 at 60.202 kb on - strand, within GFF71 at 60.202 kb on - strand, within GFF71 at 60.202 kb on - strand, within GFF71 at 60.202 kb on - strand, within GFF71 at 60.202 kb on - strand, within GFF71 at 60.207 kb on - strand, within GFF71 at 60.207 kb on - strand, within GFF71 at 60.208 kb on + strand, within GFF71 at 60.212 kb on - strand, within GFF71 at 60.221 kb on - strand, within GFF71 at 60.223 kb on + strand, within GFF71 at 60.240 kb on - strand, within GFF71 at 60.242 kb on + strand, within GFF71 at 60.246 kb on - strand, within GFF71 at 60.251 kb on - strand, within GFF71 at 60.317 kb on + strand, within GFF71 at 60.317 kb on + strand, within GFF71 at 60.338 kb on - strand, within GFF71 at 60.363 kb on - strand, within GFF71 at 60.365 kb on - strand, within GFF71 at 60.390 kb on - strand, within GFF71 at 60.400 kb on + strand, within GFF71 at 60.408 kb on - strand, within GFF71 at 60.417 kb on + strand, within GFF71 at 60.418 kb on - strand, within GFF71 at 60.459 kb on + strand, within GFF71 at 60.521 kb on - strand, within GFF71 at 60.544 kb on + strand, within GFF71 at 60.583 kb on - strand, within GFF71 at 60.706 kb on - strand, within GFF71 at 60.745 kb on + strand, within GFF71 at 60.750 kb on + strand, within GFF71 at 60.755 kb on + strand, within GFF71 at 60.795 kb on + strand, within GFF71 at 60.795 kb on + strand, within GFF71 at 60.914 kb on + strand, within GFF71 at 60.921 kb on + strand, within GFF71 at 60.921 kb on + strand, within GFF71 at 60.921 kb on + strand, within GFF71 at 60.929 kb on - strand, within GFF71 at 61.023 kb on - strand, within GFF71 at 61.041 kb on + strand at 61.041 kb on + strand at 61.049 kb on - strand at 61.056 kb on + strand at 61.085 kb on + strand at 61.123 kb on - strand at 61.147 kb on + strand at 61.155 kb on - strand at 61.188 kb on + strand at 61.196 kb on - strand at 61.196 kb on - strand at 61.241 kb on + strand at 61.241 kb on + strand at 61.249 kb on - strand, within GFF72 at 61.249 kb on - strand, within GFF72 at 61.249 kb on - strand, within GFF72 at 61.249 kb on - strand, within GFF72 at 61.249 kb on - strand, within GFF72 at 61.249 kb on - strand, within GFF72 at 61.251 kb on - strand, within GFF72 at 61.251 kb on - strand, within GFF72 at 61.252 kb on + strand, within GFF72 at 61.253 kb on + strand, within GFF72 at 61.260 kb on - strand, within GFF72 at 61.261 kb on - strand, within GFF72 at 61.261 kb on - strand, within GFF72 at 61.287 kb on + strand, within GFF72 at 61.295 kb on - strand, within GFF72 at 61.316 kb on + strand, within GFF72 at 61.333 kb on + strand, within GFF72 at 61.333 kb on + strand, within GFF72 at 61.359 kb on + strand, within GFF72 at 61.359 kb on + strand, within GFF72 at 61.359 kb on + strand, within GFF72 at 61.359 kb on + strand, within GFF72 at 61.359 kb on + strand, within GFF72 at 61.359 kb on + strand, within GFF72 at 61.360 kb on - strand, within GFF72 at 61.367 kb on - strand, within GFF72 at 61.367 kb on - strand, within GFF72 at 61.367 kb on - strand, within GFF72 at 61.367 kb on - strand, within GFF72 at 61.367 kb on - strand, within GFF72 at 61.367 kb on - strand, within GFF72 at 61.367 kb on - strand, within GFF72 at 61.367 kb on - strand, within GFF72 at 61.367 kb on - strand, within GFF72 at 61.378 kb on + strand, within GFF72 at 61.382 kb on - strand, within GFF72 at 61.427 kb on + strand, within GFF72 at 61.448 kb on - strand, within GFF72 at 61.459 kb on - strand, within GFF72 at 61.473 kb on + strand, within GFF72 at 61.473 kb on + strand, within GFF72 at 61.476 kb on - strand, within GFF72 at 61.486 kb on - strand, within GFF72 at 61.513 kb on + strand, within GFF72 at 61.513 kb on + strand, within GFF72 at 61.514 kb on - strand, within GFF72 at 61.521 kb on - strand, within GFF72 at 61.521 kb on - strand, within GFF72 at 61.521 kb on - strand, within GFF72 at 61.529 kb on - strand, within GFF72 at 61.529 kb on - strand, within GFF72 at 61.559 kb on - strand, within GFF72 at 61.559 kb on - strand, within GFF72 at 61.575 kb on + strand, within GFF72 at 61.583 kb on - strand, within GFF72 at 61.583 kb on - strand, within GFF72 at 61.583 kb on - strand, within GFF72 at 61.621 kb on + strand, within GFF72 at 61.670 kb on + strand, within GFF72 at 61.675 kb on + strand, within GFF72 at 61.675 kb on + strand, within GFF72 at 61.675 kb on + strand, within GFF72 at 61.711 kb on + strand, within GFF72 at 61.720 kb on + strand, within GFF72 at 61.726 kb on - strand, within GFF72 at 61.749 kb on + strand, within GFF72 at 61.750 kb on + strand, within GFF72 at 61.758 kb on - strand, within GFF72 at 61.770 kb on - strand, within GFF72 at 61.777 kb on + strand, within GFF72 at 61.816 kb on + strand, within GFF72 at 61.851 kb on + strand, within GFF72 at 61.851 kb on + strand, within GFF72 at 61.859 kb on - strand, within GFF72 at 61.859 kb on - strand, within GFF72 at 61.869 kb on - strand, within GFF72 at 61.899 kb on + strand, within GFF72 at 61.899 kb on + strand, within GFF72 at 61.899 kb on - strand, within GFF72 at 61.899 kb on - strand, within GFF72 at 61.907 kb on - strand, within GFF72 at 61.908 kb on + strand, within GFF72 at 61.908 kb on + strand, within GFF72 at 61.913 kb on + strand, within GFF72 at 61.921 kb on - strand, within GFF72 at 61.924 kb on - strand, within GFF72 at 61.934 kb on - strand, within GFF72 at 61.942 kb on - strand, within GFF72 at 61.942 kb on - strand, within GFF72 at 61.968 kb on + strand, within GFF72 at 61.968 kb on + strand, within GFF72 at 61.986 kb on - strand, within GFF72 at 61.993 kb on + strand, within GFF72 at 61.993 kb on + strand, within GFF72 at 61.998 kb on + strand, within GFF72 at 61.998 kb on + strand, within GFF72 at 62.007 kb on + strand, within GFF72 at 62.015 kb on - strand, within GFF72 at 62.032 kb on + strand, within GFF72 at 62.032 kb on + strand, within GFF72 at 62.040 kb on - strand, within GFF72 at 62.081 kb on - strand at 62.085 kb on - strand at 62.092 kb on - strand at 62.092 kb on - strand at 62.114 kb on + strand at 62.129 kb on - strand at 62.148 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 58,929 + GFF69 0.35 -0.2 58,973 - GFF69 0.40 -0.3 59,037 + GFF69 0.47 +1.4 59,045 - GFF69 0.48 +0.2 59,064 - GFF69 0.50 -0.2 59,173 - GFF69 0.62 -0.6 59,197 - GFF69 0.65 +1.0 59,231 + GFF69 0.68 -0.2 59,231 + GFF69 0.68 -0.7 59,231 + GFF69 0.68 -0.0 59,239 - GFF69 0.69 -0.6 59,239 - GFF69 0.69 -0.2 59,239 - GFF69 0.69 +0.3 59,239 - GFF69 0.69 -1.4 59,239 - GFF69 0.69 +0.5 59,239 - GFF69 0.69 +0.6 59,239 - GFF69 0.69 +1.5 59,249 + GFF69 0.70 -0.4 59,254 + GFF69 0.71 -0.0 59,254 + GFF69 0.71 -0.5 59,254 + GFF69 0.71 -1.5 59,262 - GFF69 0.72 +1.6 59,289 - GFF69 0.75 -0.2 59,296 - GFF69 0.76 -0.7 59,308 - GFF69 0.77 +1.1 59,349 + GFF69 0.81 +0.9 59,357 - GFF69 0.82 +0.8 59,366 + GFF69 0.83 -0.6 59,366 + GFF69 0.83 -0.7 59,366 + GFF69 0.83 -1.9 59,374 - GFF69 0.84 -0.2 59,374 - GFF69 0.84 -1.3 59,374 - GFF69 0.84 -0.4 59,375 - GFF69 0.84 +0.4 59,377 + GFF69 0.84 +0.5 59,377 + GFF69 0.84 -0.7 59,377 + GFF69 0.84 +0.1 59,377 + GFF69 0.84 +0.2 59,384 - GFF69 0.85 +1.1 59,385 - GFF69 0.85 +1.0 59,394 - GFF69 0.86 +0.7 59,400 - GFF69 0.87 +0.9 59,427 - +1.3 59,475 + -0.0 59,517 + -0.9 59,518 + -0.3 59,526 - +1.3 59,526 - +0.3 59,526 - -1.4 59,526 - -0.1 59,526 - -0.9 59,556 - +0.9 59,640 + +0.1 59,736 - GFF70 0.43 -0.1 59,767 - GFF70 0.57 +0.5 59,846 + +0.6 59,859 + -1.0 59,897 + -2.4 59,933 + -1.1 59,982 + -0.3 60,004 + -0.4 60,020 - GFF71 0.10 -1.0 60,068 + GFF71 0.14 -0.4 60,101 + GFF71 0.17 +0.5 60,101 + GFF71 0.17 -0.1 60,104 - GFF71 0.17 +0.4 60,194 + GFF71 0.24 +1.2 60,194 + GFF71 0.24 +1.0 60,194 + GFF71 0.24 -1.5 60,199 + GFF71 0.24 +0.5 60,199 + GFF71 0.24 +0.5 60,199 + GFF71 0.24 +0.0 60,202 - GFF71 0.25 -1.1 60,202 - GFF71 0.25 -0.4 60,202 - GFF71 0.25 +0.1 60,202 - GFF71 0.25 -1.1 60,202 - GFF71 0.25 +0.7 60,207 - GFF71 0.25 -0.9 60,207 - GFF71 0.25 -0.4 60,208 + GFF71 0.25 -0.9 60,212 - GFF71 0.25 +1.3 60,221 - GFF71 0.26 -0.0 60,223 + GFF71 0.26 +0.9 60,240 - GFF71 0.28 +1.2 60,242 + GFF71 0.28 -1.1 60,246 - GFF71 0.28 -1.4 60,251 - GFF71 0.28 -1.0 60,317 + GFF71 0.34 +0.9 60,317 + GFF71 0.34 -2.3 60,338 - GFF71 0.35 +0.3 60,363 - GFF71 0.37 -0.5 60,365 - GFF71 0.38 -0.5 60,390 - GFF71 0.40 +0.3 60,400 + GFF71 0.40 +0.1 60,408 - GFF71 0.41 -0.0 60,417 + GFF71 0.42 -1.1 60,418 - GFF71 0.42 +0.9 60,459 + GFF71 0.45 -1.6 60,521 - GFF71 0.50 -0.1 60,544 + GFF71 0.52 -1.7 60,583 - GFF71 0.55 -0.1 60,706 - GFF71 0.65 -0.5 60,745 + GFF71 0.68 -0.6 60,750 + GFF71 0.68 -0.3 60,755 + GFF71 0.68 +0.7 60,795 + GFF71 0.72 -1.1 60,795 + GFF71 0.72 +2.3 60,914 + GFF71 0.81 -0.2 60,921 + GFF71 0.82 +0.5 60,921 + GFF71 0.82 -1.8 60,921 + GFF71 0.82 -1.7 60,929 - GFF71 0.82 +0.1 61,023 - GFF71 0.90 -1.7 61,041 + -1.0 61,041 + +1.3 61,049 - -0.3 61,056 + -0.3 61,085 + -0.3 61,123 - -1.4 61,147 + -1.3 61,155 - +0.6 61,188 + +0.9 61,196 - -0.4 61,196 - +0.9 61,241 + -0.8 61,241 + +0.4 61,249 - GFF72 0.10 -0.5 61,249 - GFF72 0.10 +1.1 61,249 - GFF72 0.10 -0.6 61,249 - GFF72 0.10 -0.3 61,249 - GFF72 0.10 -0.4 61,249 - GFF72 0.10 +0.9 61,251 - GFF72 0.10 -1.1 61,251 - GFF72 0.10 -0.0 61,252 + GFF72 0.10 +0.1 61,253 + GFF72 0.10 -0.5 61,260 - GFF72 0.11 +1.0 61,261 - GFF72 0.11 -0.3 61,261 - GFF72 0.11 -0.5 61,287 + GFF72 0.14 -0.7 61,295 - GFF72 0.15 +0.3 61,316 + GFF72 0.17 +0.6 61,333 + GFF72 0.18 -0.3 61,333 + GFF72 0.18 +0.1 61,359 + GFF72 0.21 +0.1 61,359 + GFF72 0.21 -0.6 61,359 + GFF72 0.21 -0.0 61,359 + GFF72 0.21 +0.2 61,359 + GFF72 0.21 -0.4 61,359 + GFF72 0.21 +0.3 61,360 - GFF72 0.21 -0.9 61,367 - GFF72 0.22 +0.1 61,367 - GFF72 0.22 +0.1 61,367 - GFF72 0.22 -0.8 61,367 - GFF72 0.22 -0.1 61,367 - GFF72 0.22 +0.6 61,367 - GFF72 0.22 -0.8 61,367 - GFF72 0.22 +0.7 61,367 - GFF72 0.22 -0.4 61,367 - GFF72 0.22 -0.2 61,378 + GFF72 0.23 -0.5 61,382 - GFF72 0.23 -1.0 61,427 + GFF72 0.28 -0.9 61,448 - GFF72 0.30 +1.2 61,459 - GFF72 0.31 -1.1 61,473 + GFF72 0.32 +1.6 61,473 + GFF72 0.32 -2.1 61,476 - GFF72 0.33 +0.9 61,486 - GFF72 0.34 +0.0 61,513 + GFF72 0.36 -0.8 61,513 + GFF72 0.36 +1.5 61,514 - GFF72 0.36 -1.2 61,521 - GFF72 0.37 -2.0 61,521 - GFF72 0.37 -0.2 61,521 - GFF72 0.37 -1.3 61,529 - GFF72 0.38 -0.7 61,529 - GFF72 0.38 -0.3 61,559 - GFF72 0.41 +0.4 61,559 - GFF72 0.41 +0.4 61,575 + GFF72 0.42 +0.3 61,583 - GFF72 0.43 -2.0 61,583 - GFF72 0.43 -0.8 61,583 - GFF72 0.43 -0.9 61,621 + GFF72 0.47 +0.5 61,670 + GFF72 0.52 -0.5 61,675 + GFF72 0.52 -1.5 61,675 + GFF72 0.52 +0.7 61,675 + GFF72 0.52 -1.0 61,711 + GFF72 0.56 +0.2 61,720 + GFF72 0.57 +0.7 61,726 - GFF72 0.57 -0.7 61,749 + GFF72 0.60 -1.3 61,750 + GFF72 0.60 +0.3 61,758 - GFF72 0.61 -0.7 61,770 - GFF72 0.62 +0.5 61,777 + GFF72 0.62 +0.1 61,816 + GFF72 0.66 -0.3 61,851 + GFF72 0.70 +1.7 61,851 + GFF72 0.70 +0.1 61,859 - GFF72 0.71 -1.5 61,859 - GFF72 0.71 -0.9 61,869 - GFF72 0.72 +1.6 61,899 + GFF72 0.75 -0.5 61,899 + GFF72 0.75 +0.6 61,899 - GFF72 0.75 -0.1 61,899 - GFF72 0.75 +0.3 61,907 - GFF72 0.75 -0.2 61,908 + GFF72 0.75 -0.6 61,908 + GFF72 0.75 -0.3 61,913 + GFF72 0.76 -0.5 61,921 - GFF72 0.77 -0.4 61,924 - GFF72 0.77 -0.4 61,934 - GFF72 0.78 +1.1 61,942 - GFF72 0.79 +2.0 61,942 - GFF72 0.79 +0.2 61,968 + GFF72 0.81 -2.7 61,968 + GFF72 0.81 +0.9 61,986 - GFF72 0.83 +0.5 61,993 + GFF72 0.84 -1.1 61,993 + GFF72 0.84 -0.3 61,998 + GFF72 0.84 -1.0 61,998 + GFF72 0.84 -0.3 62,007 + GFF72 0.85 -1.4 62,015 - GFF72 0.86 -1.1 62,032 + GFF72 0.88 +0.9 62,032 + GFF72 0.88 -1.5 62,040 - GFF72 0.88 -0.5 62,081 - -0.3 62,085 - +1.7 62,092 - -0.1 62,092 - +0.1 62,114 + -0.0 62,129 - -0.5 62,148 + +1.2
Or see this region's nucleotide sequence