Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF588 and GFF589 are separated by 612 nucleotides GFF589 and GFF590 overlap by 1 nucleotides
GFF588 - Beta-carotene hydroxylase, at 589,393 to 589,911
GFF588
GFF589 - Gll3385 protein, at 590,524 to 591,243
GFF589
GFF590 - Peptide chain release factor 2, at 591,243 to 592,370
GFF590
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 589.549 kb on - strand, within GFF588 at 589.556 kb on - strand, within GFF588 at 589.575 kb on - strand, within GFF588 at 589.577 kb on + strand, within GFF588 at 589.585 kb on - strand, within GFF588 at 589.585 kb on - strand, within GFF588 at 589.598 kb on + strand, within GFF588 at 589.608 kb on + strand, within GFF588 at 589.608 kb on + strand, within GFF588 at 589.630 kb on + strand, within GFF588 at 589.665 kb on - strand, within GFF588 at 589.710 kb on + strand, within GFF588 at 589.710 kb on + strand, within GFF588 at 589.718 kb on - strand, within GFF588 at 589.718 kb on - strand, within GFF588 at 589.718 kb on - strand, within GFF588 at 589.733 kb on + strand, within GFF588 at 589.747 kb on + strand, within GFF588 at 589.759 kb on + strand, within GFF588 at 589.767 kb on - strand, within GFF588 at 589.778 kb on + strand, within GFF588 at 589.786 kb on - strand, within GFF588 at 589.856 kb on - strand, within GFF588 at 589.856 kb on - strand, within GFF588 at 589.875 kb on - strand at 589.901 kb on + strand at 589.973 kb on + strand at 589.990 kb on + strand at 590.026 kb on + strand at 590.041 kb on + strand at 590.041 kb on + strand at 590.073 kb on - strand at 590.075 kb on + strand at 590.080 kb on + strand at 590.081 kb on - strand at 590.083 kb on - strand at 590.105 kb on + strand at 590.178 kb on + strand at 590.213 kb on + strand at 590.221 kb on - strand at 590.236 kb on - strand at 590.238 kb on + strand at 590.238 kb on + strand at 590.238 kb on + strand at 590.248 kb on + strand at 590.248 kb on + strand at 590.248 kb on + strand at 590.251 kb on + strand at 590.254 kb on + strand at 590.256 kb on - strand at 590.256 kb on - strand at 590.256 kb on - strand at 590.256 kb on - strand at 590.256 kb on - strand at 590.262 kb on - strand at 590.269 kb on - strand at 590.273 kb on + strand at 590.281 kb on - strand at 590.322 kb on + strand at 590.326 kb on + strand at 590.332 kb on + strand at 590.332 kb on + strand at 590.332 kb on + strand at 590.334 kb on - strand at 590.340 kb on - strand at 590.340 kb on - strand at 590.363 kb on + strand at 590.383 kb on + strand at 590.383 kb on + strand at 590.428 kb on + strand at 590.468 kb on - strand at 590.493 kb on - strand at 590.509 kb on + strand at 590.514 kb on + strand at 590.514 kb on + strand at 590.517 kb on - strand at 590.517 kb on - strand at 590.519 kb on + strand at 590.522 kb on - strand at 590.522 kb on - strand at 590.522 kb on - strand at 590.522 kb on - strand at 590.525 kb on + strand at 590.528 kb on - strand at 590.528 kb on - strand at 590.533 kb on - strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.549 kb on + strand at 590.552 kb on - strand at 590.552 kb on - strand at 590.554 kb on + strand at 590.559 kb on + strand at 590.559 kb on + strand at 590.559 kb on + strand at 590.559 kb on + strand at 590.559 kb on + strand at 590.567 kb on - strand at 590.567 kb on - strand at 590.568 kb on + strand at 590.568 kb on + strand at 590.573 kb on + strand at 590.573 kb on + strand at 590.576 kb on - strand at 590.576 kb on - strand at 590.576 kb on - strand at 590.581 kb on - strand at 590.581 kb on - strand at 590.606 kb on + strand, within GFF589 at 590.623 kb on + strand, within GFF589 at 590.655 kb on + strand, within GFF589 at 590.655 kb on + strand, within GFF589 at 590.679 kb on - strand, within GFF589 at 590.681 kb on + strand, within GFF589 at 590.681 kb on + strand, within GFF589 at 590.685 kb on - strand, within GFF589 at 590.689 kb on - strand, within GFF589 at 590.689 kb on - strand, within GFF589 at 590.689 kb on - strand, within GFF589 at 590.714 kb on + strand, within GFF589 at 590.714 kb on + strand, within GFF589 at 590.714 kb on + strand, within GFF589 at 590.715 kb on - strand, within GFF589 at 590.735 kb on + strand, within GFF589 at 590.742 kb on + strand, within GFF589 at 590.743 kb on - strand, within GFF589 at 590.744 kb on + strand, within GFF589 at 590.747 kb on + strand, within GFF589 at 590.747 kb on + strand, within GFF589 at 590.747 kb on + strand, within GFF589 at 590.747 kb on + strand, within GFF589 at 590.755 kb on - strand, within GFF589 at 590.755 kb on - strand, within GFF589 at 590.763 kb on + strand, within GFF589 at 590.767 kb on + strand, within GFF589 at 590.773 kb on + strand, within GFF589 at 590.774 kb on - strand, within GFF589 at 590.775 kb on - strand, within GFF589 at 590.776 kb on - strand, within GFF589 at 590.776 kb on - strand, within GFF589 at 590.802 kb on - strand, within GFF589 at 590.804 kb on + strand, within GFF589 at 590.822 kb on - strand, within GFF589 at 590.835 kb on + strand, within GFF589 at 590.835 kb on + strand, within GFF589 at 590.835 kb on + strand, within GFF589 at 590.835 kb on + strand, within GFF589 at 590.836 kb on + strand, within GFF589 at 590.843 kb on - strand, within GFF589 at 590.843 kb on - strand, within GFF589 at 590.843 kb on - strand, within GFF589 at 590.843 kb on - strand, within GFF589 at 590.843 kb on - strand, within GFF589 at 590.843 kb on - strand, within GFF589 at 590.849 kb on + strand, within GFF589 at 590.852 kb on - strand, within GFF589 at 590.859 kb on + strand, within GFF589 at 590.867 kb on - strand, within GFF589 at 590.898 kb on - strand, within GFF589 at 590.909 kb on - strand, within GFF589 at 590.928 kb on + strand, within GFF589 at 590.953 kb on + strand, within GFF589 at 590.982 kb on + strand, within GFF589 at 590.982 kb on + strand, within GFF589 at 590.982 kb on + strand, within GFF589 at 590.982 kb on + strand, within GFF589 at 590.982 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.984 kb on + strand, within GFF589 at 590.986 kb on + strand, within GFF589 at 590.990 kb on - strand, within GFF589 at 590.990 kb on - strand, within GFF589 at 590.992 kb on + strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.992 kb on - strand, within GFF589 at 590.994 kb on - strand, within GFF589 at 590.994 kb on - strand, within GFF589 at 591.000 kb on - strand, within GFF589 at 591.000 kb on - strand, within GFF589 at 591.005 kb on - strand, within GFF589 at 591.012 kb on + strand, within GFF589 at 591.019 kb on + strand, within GFF589 at 591.019 kb on + strand, within GFF589 at 591.019 kb on + strand, within GFF589 at 591.020 kb on + strand, within GFF589 at 591.027 kb on - strand, within GFF589 at 591.027 kb on - strand, within GFF589 at 591.030 kb on + strand, within GFF589 at 591.030 kb on + strand, within GFF589 at 591.071 kb on + strand, within GFF589 at 591.073 kb on - strand, within GFF589 at 591.074 kb on - strand, within GFF589 at 591.074 kb on - strand, within GFF589 at 591.090 kb on + strand, within GFF589 at 591.139 kb on + strand, within GFF589 at 591.141 kb on + strand, within GFF589 at 591.147 kb on - strand, within GFF589 at 591.147 kb on - strand, within GFF589 at 591.174 kb on + strand at 591.182 kb on - strand at 591.183 kb on - strand at 591.190 kb on - strand at 591.218 kb on + strand at 591.223 kb on + strand at 591.223 kb on + strand at 591.223 kb on + strand at 591.223 kb on + strand at 591.231 kb on - strand at 591.267 kb on + strand at 591.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 589,549 - GFF588 0.30 -1.4 589,556 - GFF588 0.31 -0.7 589,575 - GFF588 0.35 +1.5 589,577 + GFF588 0.35 +1.2 589,585 - GFF588 0.37 -0.7 589,585 - GFF588 0.37 -0.0 589,598 + GFF588 0.39 -1.7 589,608 + GFF588 0.41 +0.1 589,608 + GFF588 0.41 +0.1 589,630 + GFF588 0.46 +0.7 589,665 - GFF588 0.52 -1.2 589,710 + GFF588 0.61 -1.1 589,710 + GFF588 0.61 -0.2 589,718 - GFF588 0.63 -1.0 589,718 - GFF588 0.63 +0.5 589,718 - GFF588 0.63 -0.9 589,733 + GFF588 0.66 -2.6 589,747 + GFF588 0.68 +0.1 589,759 + GFF588 0.71 +0.5 589,767 - GFF588 0.72 +0.2 589,778 + GFF588 0.74 -1.5 589,786 - GFF588 0.76 -0.4 589,856 - GFF588 0.89 +0.9 589,856 - GFF588 0.89 -0.6 589,875 - +0.5 589,901 + +0.4 589,973 + +0.7 589,990 + +0.3 590,026 + +0.5 590,041 + +0.0 590,041 + +0.2 590,073 - +0.8 590,075 + -1.3 590,080 + -0.4 590,081 - -0.1 590,083 - -0.3 590,105 + -1.4 590,178 + +0.6 590,213 + +0.1 590,221 - +0.3 590,236 - +0.7 590,238 + +0.7 590,238 + +1.2 590,238 + -0.6 590,248 + +0.3 590,248 + +0.3 590,248 + -0.4 590,251 + -1.4 590,254 + +1.0 590,256 - -0.7 590,256 - -1.4 590,256 - +0.2 590,256 - -1.7 590,256 - +0.4 590,262 - -0.3 590,269 - +0.1 590,273 + +0.0 590,281 - +0.4 590,322 + +0.0 590,326 + -0.2 590,332 + -1.4 590,332 + +0.1 590,332 + -0.4 590,334 - +1.5 590,340 - -2.9 590,340 - +0.2 590,363 + +0.2 590,383 + +0.6 590,383 + -2.3 590,428 + -0.2 590,468 - +0.6 590,493 - -0.0 590,509 + +0.2 590,514 + +0.5 590,514 + +0.3 590,517 - +0.8 590,517 - -0.2 590,519 + -0.2 590,522 - +0.1 590,522 - -2.0 590,522 - -1.5 590,522 - +0.2 590,525 + -1.0 590,528 - -1.2 590,528 - -0.0 590,533 - +1.2 590,549 + -1.2 590,549 + +0.1 590,549 + -0.1 590,552 - +2.0 590,552 - -1.0 590,554 + +0.3 590,559 + -0.2 590,559 + -1.7 590,559 + +0.3 590,559 + +0.5 590,559 + -1.2 590,567 - -0.5 590,567 - +1.0 590,568 + -0.5 590,568 + -0.9 590,573 + +0.3 590,573 + -0.4 590,576 - +0.3 590,576 - +0.8 590,576 - +0.4 590,581 - +0.7 590,581 - -1.3 590,606 + GFF589 0.11 +0.1 590,623 + GFF589 0.14 -0.2 590,655 + GFF589 0.18 +0.3 590,655 + GFF589 0.18 +0.2 590,679 - GFF589 0.22 +0.6 590,681 + GFF589 0.22 +0.4 590,681 + GFF589 0.22 -2.0 590,685 - GFF589 0.22 -0.3 590,689 - GFF589 0.23 +0.9 590,689 - GFF589 0.23 -2.5 590,689 - GFF589 0.23 -1.3 590,714 + GFF589 0.26 +0.4 590,714 + GFF589 0.26 +1.1 590,714 + GFF589 0.26 -1.9 590,715 - GFF589 0.27 -1.2 590,735 + GFF589 0.29 -0.9 590,742 + GFF589 0.30 +1.4 590,743 - GFF589 0.30 -0.3 590,744 + GFF589 0.31 +1.8 590,747 + GFF589 0.31 +1.0 590,747 + GFF589 0.31 +0.0 590,747 + GFF589 0.31 +0.2 590,747 + GFF589 0.31 -0.8 590,755 - GFF589 0.32 -1.7 590,755 - GFF589 0.32 -0.1 590,763 + GFF589 0.33 -0.0 590,767 + GFF589 0.34 +0.8 590,773 + GFF589 0.35 -2.5 590,774 - GFF589 0.35 -0.1 590,775 - GFF589 0.35 -0.7 590,776 - GFF589 0.35 -0.5 590,776 - GFF589 0.35 -0.0 590,802 - GFF589 0.39 -2.5 590,804 + GFF589 0.39 -0.1 590,822 - GFF589 0.41 -0.6 590,835 + GFF589 0.43 +0.5 590,835 + GFF589 0.43 +0.8 590,835 + GFF589 0.43 +0.1 590,835 + GFF589 0.43 -1.3 590,836 + GFF589 0.43 +0.7 590,843 - GFF589 0.44 -0.1 590,843 - GFF589 0.44 -1.9 590,843 - GFF589 0.44 -1.6 590,843 - GFF589 0.44 +1.1 590,843 - GFF589 0.44 +0.2 590,843 - GFF589 0.44 +0.9 590,849 + GFF589 0.45 -1.4 590,852 - GFF589 0.46 -1.9 590,859 + GFF589 0.47 -1.2 590,867 - GFF589 0.48 -0.5 590,898 - GFF589 0.52 -0.4 590,909 - GFF589 0.53 -0.2 590,928 + GFF589 0.56 +0.6 590,953 + GFF589 0.60 -2.2 590,982 + GFF589 0.64 +0.3 590,982 + GFF589 0.64 -0.5 590,982 + GFF589 0.64 -0.5 590,982 + GFF589 0.64 +0.6 590,982 + GFF589 0.64 -0.8 590,984 + GFF589 0.64 -0.3 590,984 + GFF589 0.64 -1.6 590,984 + GFF589 0.64 +0.3 590,984 + GFF589 0.64 -1.2 590,984 + GFF589 0.64 +1.6 590,984 + GFF589 0.64 -0.0 590,984 + GFF589 0.64 -0.9 590,984 + GFF589 0.64 -1.2 590,984 + GFF589 0.64 -1.5 590,984 + GFF589 0.64 +0.5 590,984 + GFF589 0.64 +0.3 590,984 + GFF589 0.64 -0.9 590,984 + GFF589 0.64 -1.5 590,984 + GFF589 0.64 -1.0 590,986 + GFF589 0.64 +0.8 590,990 - GFF589 0.65 -0.3 590,990 - GFF589 0.65 +0.9 590,992 + GFF589 0.65 -0.3 590,992 - GFF589 0.65 -0.8 590,992 - GFF589 0.65 -0.9 590,992 - GFF589 0.65 -0.3 590,992 - GFF589 0.65 -1.8 590,992 - GFF589 0.65 -0.8 590,992 - GFF589 0.65 +1.4 590,992 - GFF589 0.65 -2.2 590,992 - GFF589 0.65 -0.9 590,992 - GFF589 0.65 -0.2 590,992 - GFF589 0.65 +0.1 590,994 - GFF589 0.65 -1.0 590,994 - GFF589 0.65 +0.2 591,000 - GFF589 0.66 -0.3 591,000 - GFF589 0.66 -0.9 591,005 - GFF589 0.67 -2.0 591,012 + GFF589 0.68 +0.6 591,019 + GFF589 0.69 -0.1 591,019 + GFF589 0.69 -0.8 591,019 + GFF589 0.69 -1.8 591,020 + GFF589 0.69 -1.2 591,027 - GFF589 0.70 +0.4 591,027 - GFF589 0.70 +1.2 591,030 + GFF589 0.70 -0.5 591,030 + GFF589 0.70 +0.3 591,071 + GFF589 0.76 -1.5 591,073 - GFF589 0.76 -1.7 591,074 - GFF589 0.76 -1.7 591,074 - GFF589 0.76 -0.3 591,090 + GFF589 0.79 -0.2 591,139 + GFF589 0.85 -1.2 591,141 + GFF589 0.86 +0.9 591,147 - GFF589 0.87 +0.4 591,147 - GFF589 0.87 -0.6 591,174 + +0.3 591,182 - -1.1 591,183 - +0.8 591,190 - +0.8 591,218 + +1.9 591,223 + -0.5 591,223 + +1.0 591,223 + +0.4 591,223 + +1.5 591,231 - +0.1 591,267 + +0.2 591,282 - -2.0
Or see this region's nucleotide sequence