Strain Fitness in Sphingobium sp. HT1-2 around GFF579

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF578 and GFF579 are separated by 8 nucleotidesGFF579 and GFF580 are separated by 44 nucleotidesGFF580 and GFF581 are separated by 49 nucleotides GFF578 - hypothetical protein, at 577,089 to 578,489 GFF578 GFF579 - 3-phytase, fusion, putative, at 578,498 to 579,571 GFF579 GFF580 - Nudix hydrolase family protein, at 579,616 to 580,020 GFF580 GFF581 - Aminopeptidase N, at 580,070 to 582,718 GFF581 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 577.517 kb on - strand, within GFF578at 577.517 kb on - strand, within GFF578at 577.523 kb on - strand, within GFF578at 577.531 kb on + strand, within GFF578at 577.531 kb on + strand, within GFF578at 577.539 kb on - strand, within GFF578at 577.560 kb on + strand, within GFF578at 577.568 kb on - strand, within GFF578at 577.596 kb on + strand, within GFF578at 577.652 kb on + strand, within GFF578at 577.668 kb on - strand, within GFF578at 577.695 kb on - strand, within GFF578at 577.709 kb on - strand, within GFF578at 577.714 kb on + strand, within GFF578at 577.722 kb on - strand, within GFF578at 577.723 kb on + strand, within GFF578at 577.731 kb on - strand, within GFF578at 577.774 kb on - strand, within GFF578at 577.774 kb on - strand, within GFF578at 577.807 kb on + strand, within GFF578at 577.837 kb on - strand, within GFF578at 577.847 kb on - strand, within GFF578at 577.857 kb on - strand, within GFF578at 577.858 kb on - strand, within GFF578at 577.896 kb on + strand, within GFF578at 577.904 kb on - strand, within GFF578at 577.909 kb on - strand, within GFF578at 577.930 kb on + strand, within GFF578at 577.957 kb on + strand, within GFF578at 577.960 kb on + strand, within GFF578at 577.960 kb on - strand, within GFF578at 577.960 kb on - strand, within GFF578at 577.962 kb on + strand, within GFF578at 577.976 kb on - strand, within GFF578at 578.013 kb on + strand, within GFF578at 578.013 kb on + strand, within GFF578at 578.013 kb on + strand, within GFF578at 578.013 kb on + strand, within GFF578at 578.013 kb on + strand, within GFF578at 578.021 kb on - strand, within GFF578at 578.021 kb on - strand, within GFF578at 578.021 kb on - strand, within GFF578at 578.021 kb on - strand, within GFF578at 578.021 kb on - strand, within GFF578at 578.021 kb on - strand, within GFF578at 578.021 kb on - strand, within GFF578at 578.021 kb on - strand, within GFF578at 578.031 kb on - strand, within GFF578at 578.031 kb on - strand, within GFF578at 578.036 kb on + strand, within GFF578at 578.049 kb on - strand, within GFF578at 578.056 kb on - strand, within GFF578at 578.081 kb on + strand, within GFF578at 578.081 kb on + strand, within GFF578at 578.081 kb on + strand, within GFF578at 578.088 kb on - strand, within GFF578at 578.089 kb on - strand, within GFF578at 578.089 kb on - strand, within GFF578at 578.107 kb on + strand, within GFF578at 578.115 kb on - strand, within GFF578at 578.115 kb on - strand, within GFF578at 578.134 kb on + strand, within GFF578at 578.134 kb on + strand, within GFF578at 578.168 kb on - strand, within GFF578at 578.171 kb on + strand, within GFF578at 578.171 kb on + strand, within GFF578at 578.171 kb on + strand, within GFF578at 578.171 kb on + strand, within GFF578at 578.179 kb on - strand, within GFF578at 578.195 kb on + strand, within GFF578at 578.199 kb on - strand, within GFF578at 578.203 kb on - strand, within GFF578at 578.227 kb on + strand, within GFF578at 578.248 kb on + strand, within GFF578at 578.248 kb on + strand, within GFF578at 578.251 kb on + strand, within GFF578at 578.254 kb on - strand, within GFF578at 578.269 kb on - strand, within GFF578at 578.306 kb on - strand, within GFF578at 578.351 kb on + strandat 578.359 kb on - strandat 578.362 kb on + strandat 578.389 kb on + strandat 578.394 kb on + strandat 578.397 kb on - strandat 578.397 kb on - strandat 578.440 kb on - strandat 578.440 kb on - strandat 578.500 kb on + strandat 578.508 kb on + strandat 578.508 kb on + strandat 578.508 kb on + strandat 578.508 kb on + strandat 578.516 kb on - strandat 578.516 kb on - strandat 578.650 kb on + strand, within GFF579at 578.739 kb on - strand, within GFF579at 578.757 kb on + strand, within GFF579at 578.779 kb on - strand, within GFF579at 578.797 kb on + strand, within GFF579at 578.805 kb on + strand, within GFF579at 578.813 kb on - strand, within GFF579at 578.815 kb on + strand, within GFF579at 578.815 kb on + strand, within GFF579at 578.844 kb on + strand, within GFF579at 578.852 kb on - strand, within GFF579at 578.852 kb on - strand, within GFF579at 578.887 kb on + strand, within GFF579at 578.902 kb on + strand, within GFF579at 578.910 kb on - strand, within GFF579at 578.910 kb on - strand, within GFF579at 578.910 kb on - strand, within GFF579at 578.910 kb on - strand, within GFF579at 578.910 kb on - strand, within GFF579at 578.910 kb on - strand, within GFF579at 578.910 kb on - strand, within GFF579at 578.910 kb on - strand, within GFF579at 578.955 kb on - strand, within GFF579at 578.955 kb on - strand, within GFF579at 578.970 kb on - strand, within GFF579at 578.970 kb on - strand, within GFF579at 578.976 kb on - strand, within GFF579at 578.989 kb on - strand, within GFF579at 578.989 kb on - strand, within GFF579at 578.994 kb on - strand, within GFF579at 578.994 kb on - strand, within GFF579at 578.994 kb on - strand, within GFF579at 578.994 kb on - strand, within GFF579at 579.005 kb on + strand, within GFF579at 579.013 kb on - strand, within GFF579at 579.013 kb on - strand, within GFF579at 579.071 kb on + strand, within GFF579at 579.092 kb on - strand, within GFF579at 579.096 kb on + strand, within GFF579at 579.103 kb on + strand, within GFF579at 579.104 kb on - strand, within GFF579at 579.104 kb on - strand, within GFF579at 579.111 kb on - strand, within GFF579at 579.119 kb on + strand, within GFF579at 579.124 kb on - strand, within GFF579at 579.131 kb on + strand, within GFF579at 579.147 kb on - strand, within GFF579at 579.151 kb on + strand, within GFF579at 579.159 kb on - strand, within GFF579at 579.159 kb on - strand, within GFF579at 579.159 kb on - strand, within GFF579at 579.187 kb on - strand, within GFF579at 579.194 kb on - strand, within GFF579at 579.298 kb on + strand, within GFF579at 579.299 kb on - strand, within GFF579at 579.306 kb on - strand, within GFF579at 579.311 kb on - strand, within GFF579at 579.315 kb on + strand, within GFF579at 579.323 kb on - strand, within GFF579at 579.325 kb on + strand, within GFF579at 579.333 kb on - strand, within GFF579at 579.345 kb on + strand, within GFF579at 579.353 kb on - strand, within GFF579at 579.364 kb on + strand, within GFF579at 579.364 kb on + strand, within GFF579at 579.487 kb on + strandat 579.495 kb on - strandat 579.551 kb on + strandat 579.558 kb on - strandat 579.630 kb on + strandat 579.665 kb on - strand, within GFF580at 579.697 kb on - strand, within GFF580at 579.726 kb on + strand, within GFF580at 579.731 kb on + strand, within GFF580at 579.772 kb on + strand, within GFF580at 579.778 kb on - strand, within GFF580at 579.779 kb on + strand, within GFF580at 579.780 kb on - strand, within GFF580at 579.782 kb on - strand, within GFF580at 579.785 kb on - strand, within GFF580at 579.799 kb on - strand, within GFF580at 579.809 kb on - strand, within GFF580at 579.884 kb on + strand, within GFF580at 579.884 kb on + strand, within GFF580at 579.884 kb on + strand, within GFF580at 579.884 kb on + strand, within GFF580at 579.892 kb on - strand, within GFF580at 579.892 kb on - strand, within GFF580at 579.894 kb on + strand, within GFF580at 579.917 kb on + strand, within GFF580at 579.924 kb on - strand, within GFF580at 579.925 kb on - strand, within GFF580at 579.963 kb on + strand, within GFF580at 580.018 kb on - strandat 580.018 kb on - strandat 580.018 kb on - strandat 580.018 kb on - strandat 580.024 kb on + strandat 580.026 kb on + strandat 580.031 kb on + strandat 580.032 kb on - strandat 580.034 kb on - strandat 580.068 kb on + strandat 580.076 kb on - strandat 580.081 kb on - strandat 580.123 kb on + strandat 580.165 kb on - strandat 580.182 kb on + strandat 580.261 kb on - strandat 580.266 kb on - strandat 580.295 kb on + strandat 580.315 kb on + strandat 580.334 kb on + strandat 580.380 kb on + strand, within GFF581at 580.398 kb on + strand, within GFF581at 580.402 kb on + strand, within GFF581at 580.426 kb on - strand, within GFF581at 580.443 kb on + strand, within GFF581at 580.445 kb on - strand, within GFF581at 580.446 kb on + strand, within GFF581at 580.480 kb on - strand, within GFF581at 580.494 kb on + strand, within GFF581at 580.494 kb on + strand, within GFF581at 580.494 kb on + strand, within GFF581at 580.494 kb on + strand, within GFF581at 580.494 kb on + strand, within GFF581at 580.494 kb on + strand, within GFF581at 580.502 kb on - strand, within GFF581at 580.521 kb on - strand, within GFF581at 580.563 kb on + strand, within GFF581at 580.566 kb on - strand, within GFF581

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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577,517 - GFF578 0.31 -0.4
577,517 - GFF578 0.31 -1.0
577,523 - GFF578 0.31 +1.0
577,531 + GFF578 0.32 +1.4
577,531 + GFF578 0.32 +0.4
577,539 - GFF578 0.32 +0.3
577,560 + GFF578 0.34 -1.2
577,568 - GFF578 0.34 +0.3
577,596 + GFF578 0.36 -2.0
577,652 + GFF578 0.40 -1.9
577,668 - GFF578 0.41 -1.3
577,695 - GFF578 0.43 -1.1
577,709 - GFF578 0.44 +0.7
577,714 + GFF578 0.45 +0.6
577,722 - GFF578 0.45 -1.1
577,723 + GFF578 0.45 +0.3
577,731 - GFF578 0.46 +0.0
577,774 - GFF578 0.49 +0.0
577,774 - GFF578 0.49 -1.1
577,807 + GFF578 0.51 -0.3
577,837 - GFF578 0.53 +1.0
577,847 - GFF578 0.54 -0.7
577,857 - GFF578 0.55 -1.3
577,858 - GFF578 0.55 -0.1
577,896 + GFF578 0.58 +0.9
577,904 - GFF578 0.58 -0.1
577,909 - GFF578 0.59 -0.4
577,930 + GFF578 0.60 -2.3
577,957 + GFF578 0.62 -0.2
577,960 + GFF578 0.62 +0.0
577,960 - GFF578 0.62 +1.0
577,960 - GFF578 0.62 +0.5
577,962 + GFF578 0.62 -0.6
577,976 - GFF578 0.63 -0.5
578,013 + GFF578 0.66 -1.0
578,013 + GFF578 0.66 -0.1
578,013 + GFF578 0.66 +1.6
578,013 + GFF578 0.66 +0.0
578,013 + GFF578 0.66 +0.0
578,021 - GFF578 0.67 -0.2
578,021 - GFF578 0.67 +1.7
578,021 - GFF578 0.67 -0.0
578,021 - GFF578 0.67 -0.5
578,021 - GFF578 0.67 -1.2
578,021 - GFF578 0.67 -1.9
578,021 - GFF578 0.67 -0.5
578,021 - GFF578 0.67 -0.1
578,031 - GFF578 0.67 +0.7
578,031 - GFF578 0.67 -1.2
578,036 + GFF578 0.68 +0.0
578,049 - GFF578 0.69 +1.2
578,056 - GFF578 0.69 -0.8
578,081 + GFF578 0.71 +2.1
578,081 + GFF578 0.71 +0.7
578,081 + GFF578 0.71 +1.5
578,088 - GFF578 0.71 -0.8
578,089 - GFF578 0.71 +1.0
578,089 - GFF578 0.71 -0.1
578,107 + GFF578 0.73 +0.9
578,115 - GFF578 0.73 -3.0
578,115 - GFF578 0.73 +0.8
578,134 + GFF578 0.75 +0.8
578,134 + GFF578 0.75 +0.4
578,168 - GFF578 0.77 +0.1
578,171 + GFF578 0.77 -0.3
578,171 + GFF578 0.77 +0.3
578,171 + GFF578 0.77 -0.0
578,171 + GFF578 0.77 -0.6
578,179 - GFF578 0.78 +0.4
578,195 + GFF578 0.79 +1.3
578,199 - GFF578 0.79 -0.6
578,203 - GFF578 0.80 +1.8
578,227 + GFF578 0.81 +1.2
578,248 + GFF578 0.83 +0.3
578,248 + GFF578 0.83 +0.4
578,251 + GFF578 0.83 +0.0
578,254 - GFF578 0.83 +0.0
578,269 - GFF578 0.84 +0.1
578,306 - GFF578 0.87 -1.4
578,351 + +0.5
578,359 - +1.1
578,362 + -1.7
578,389 + +0.3
578,394 + -0.7
578,397 - +0.5
578,397 - +0.5
578,440 - +1.3
578,440 - -0.1
578,500 + +0.4
578,508 + -1.6
578,508 + -1.8
578,508 + -0.3
578,508 + -1.0
578,516 - -1.9
578,516 - +0.5
578,650 + GFF579 0.14 -0.8
578,739 - GFF579 0.22 +0.4
578,757 + GFF579 0.24 +0.2
578,779 - GFF579 0.26 -1.2
578,797 + GFF579 0.28 +1.4
578,805 + GFF579 0.29 +0.1
578,813 - GFF579 0.29 -0.2
578,815 + GFF579 0.30 -2.5
578,815 + GFF579 0.30 -0.3
578,844 + GFF579 0.32 -0.6
578,852 - GFF579 0.33 +3.0
578,852 - GFF579 0.33 +1.5
578,887 + GFF579 0.36 -1.1
578,902 + GFF579 0.38 +0.7
578,910 - GFF579 0.38 +0.6
578,910 - GFF579 0.38 -0.7
578,910 - GFF579 0.38 +0.2
578,910 - GFF579 0.38 +0.4
578,910 - GFF579 0.38 +0.4
578,910 - GFF579 0.38 +2.0
578,910 - GFF579 0.38 +1.6
578,910 - GFF579 0.38 +0.4
578,955 - GFF579 0.43 -0.6
578,955 - GFF579 0.43 -1.9
578,970 - GFF579 0.44 +1.0
578,970 - GFF579 0.44 -0.8
578,976 - GFF579 0.45 +0.4
578,989 - GFF579 0.46 -1.0
578,989 - GFF579 0.46 -0.9
578,994 - GFF579 0.46 +0.0
578,994 - GFF579 0.46 +0.1
578,994 - GFF579 0.46 -1.4
578,994 - GFF579 0.46 +0.2
579,005 + GFF579 0.47 -1.2
579,013 - GFF579 0.48 -0.7
579,013 - GFF579 0.48 +1.1
579,071 + GFF579 0.53 +0.3
579,092 - GFF579 0.55 +0.5
579,096 + GFF579 0.56 +1.6
579,103 + GFF579 0.56 -1.4
579,104 - GFF579 0.56 -0.5
579,104 - GFF579 0.56 +0.4
579,111 - GFF579 0.57 +1.8
579,119 + GFF579 0.58 +1.0
579,124 - GFF579 0.58 +0.3
579,131 + GFF579 0.59 -0.3
579,147 - GFF579 0.60 +0.3
579,151 + GFF579 0.61 -2.0
579,159 - GFF579 0.62 +0.5
579,159 - GFF579 0.62 -0.2
579,159 - GFF579 0.62 -0.1
579,187 - GFF579 0.64 +0.7
579,194 - GFF579 0.65 +0.4
579,298 + GFF579 0.74 +0.1
579,299 - GFF579 0.75 +0.9
579,306 - GFF579 0.75 -0.4
579,311 - GFF579 0.76 -0.3
579,315 + GFF579 0.76 +0.5
579,323 - GFF579 0.77 -0.6
579,325 + GFF579 0.77 +1.0
579,333 - GFF579 0.78 +0.8
579,345 + GFF579 0.79 -0.3
579,353 - GFF579 0.80 -0.3
579,364 + GFF579 0.81 -0.2
579,364 + GFF579 0.81 +0.0
579,487 + +0.3
579,495 - -0.9
579,551 + +0.5
579,558 - +1.8
579,630 + +0.5
579,665 - GFF580 0.12 -0.4
579,697 - GFF580 0.20 -0.8
579,726 + GFF580 0.27 +2.1
579,731 + GFF580 0.28 -1.1
579,772 + GFF580 0.39 +1.1
579,778 - GFF580 0.40 +0.2
579,779 + GFF580 0.40 -1.3
579,780 - GFF580 0.40 -0.1
579,782 - GFF580 0.41 -0.2
579,785 - GFF580 0.42 -1.5
579,799 - GFF580 0.45 +1.4
579,809 - GFF580 0.48 -3.2
579,884 + GFF580 0.66 +1.4
579,884 + GFF580 0.66 -0.2
579,884 + GFF580 0.66 +0.2
579,884 + GFF580 0.66 -0.4
579,892 - GFF580 0.68 -2.2
579,892 - GFF580 0.68 +0.2
579,894 + GFF580 0.69 -0.6
579,917 + GFF580 0.74 +0.1
579,924 - GFF580 0.76 -2.3
579,925 - GFF580 0.76 +0.2
579,963 + GFF580 0.86 +1.2
580,018 - -0.8
580,018 - +0.3
580,018 - +2.1
580,018 - -0.1
580,024 + -0.5
580,026 + +0.2
580,031 + -0.0
580,032 - -1.5
580,034 - -0.6
580,068 + +1.6
580,076 - +0.3
580,081 - +0.1
580,123 + -1.0
580,165 - +0.4
580,182 + -2.4
580,261 - -0.1
580,266 - +0.1
580,295 + -0.8
580,315 + +0.5
580,334 + +0.2
580,380 + GFF581 0.12 -0.9
580,398 + GFF581 0.12 -0.7
580,402 + GFF581 0.13 -0.6
580,426 - GFF581 0.13 +0.8
580,443 + GFF581 0.14 -0.4
580,445 - GFF581 0.14 +0.5
580,446 + GFF581 0.14 +0.3
580,480 - GFF581 0.15 -0.3
580,494 + GFF581 0.16 -0.1
580,494 + GFF581 0.16 -1.3
580,494 + GFF581 0.16 -0.6
580,494 + GFF581 0.16 +0.6
580,494 + GFF581 0.16 +0.1
580,494 + GFF581 0.16 -1.9
580,502 - GFF581 0.16 -0.7
580,521 - GFF581 0.17 +0.8
580,563 + GFF581 0.19 -0.4
580,566 - GFF581 0.19 -0.1

Or see this region's nucleotide sequence