Strain Fitness in Sphingobium sp. HT1-2 around GFF5243

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,237,241	+				-1.0
5,237,243	+				-1.1
5,237,243	+				-1.3
5,237,243	+				+0.6
5,237,243	+				+0.6
5,237,243	+				+0.1
5,237,243	+				-0.9
5,237,245	+				-0.2
5,237,251	-				-0.6
5,237,251	-				+0.0
5,237,280	+				-1.9
5,237,281	-				-0.5
5,237,293	+				-1.7
5,237,293	+				-2.7
5,237,293	+				-0.4
5,237,301	-				-1.5
5,237,301	-				+0.2
5,237,301	-				-0.7
5,237,323	-				-0.8
5,237,324	-				-0.9
5,237,326	+				-0.3
5,237,334	-		GFF5242	0.10	+0.6
5,237,334	-		GFF5242	0.10	-0.3
5,237,347	+		GFF5242	0.12	-0.7
5,237,352	+		GFF5242	0.12	+0.6
5,237,355	-		GFF5242	0.12	+0.2
5,237,372	+		GFF5242	0.14	+0.0
5,237,374	+		GFF5242	0.14	+1.0
5,237,393	+		GFF5242	0.16	-2.7
5,237,395	+		GFF5242	0.17	+0.3
5,237,396	-		GFF5242	0.17	-1.9
5,237,401	-		GFF5242	0.17	+1.9
5,237,410	+		GFF5242	0.18	-0.7
5,237,433	+		GFF5242	0.21	+0.8
5,237,450	+		GFF5242	0.22	-1.6
5,237,458	+		GFF5242	0.23	-1.2
5,237,458	+		GFF5242	0.23	+0.6
5,237,463	+		GFF5242	0.24	-0.9
5,237,466	-		GFF5242	0.24	-0.6
5,237,471	-		GFF5242	0.24	+0.3
5,237,471	-		GFF5242	0.24	+0.4
5,237,471	-		GFF5242	0.24	-0.3
5,237,472	+		GFF5242	0.25	+0.7
5,237,476	-		GFF5242	0.25	-0.1
5,237,476	-		GFF5242	0.25	-1.1
5,237,476	-		GFF5242	0.25	-0.4
5,237,483	+		GFF5242	0.26	+0.0
5,237,502	-		GFF5242	0.28	+0.9
5,237,511	+		GFF5242	0.29	-1.4
5,237,511	+		GFF5242	0.29	+0.1
5,237,524	+		GFF5242	0.30	+1.2
5,237,598	+		GFF5242	0.38	+0.5
5,237,598	+		GFF5242	0.38	-1.9
5,237,602	+		GFF5242	0.38	+1.6
5,237,632	+		GFF5242	0.41	-0.4
5,237,637	+		GFF5242	0.42	+0.3
5,237,637	+		GFF5242	0.42	-1.7
5,237,640	-		GFF5242	0.42	-0.8
5,237,640	-		GFF5242	0.42	+1.4
5,237,645	-		GFF5242	0.42	+0.7
5,237,650	-		GFF5242	0.43	-1.9
5,237,685	+		GFF5242	0.47	-0.2
5,237,685	+		GFF5242	0.47	+0.3
5,237,685	+		GFF5242	0.47	+1.1
5,237,685	+		GFF5242	0.47	-1.8
5,237,685	+		GFF5242	0.47	-0.2
5,237,685	+		GFF5242	0.47	+0.4
5,237,685	+		GFF5242	0.47	-0.8
5,237,685	+		GFF5242	0.47	+1.4
5,237,685	+		GFF5242	0.47	+0.8
5,237,685	+		GFF5242	0.47	+0.3
5,237,685	+		GFF5242	0.47	-2.2
5,237,685	+		GFF5242	0.47	+0.6
5,237,685	+		GFF5242	0.47	-0.4
5,237,685	+		GFF5242	0.47	-0.9
5,237,685	+		GFF5242	0.47	+1.0
5,237,685	+		GFF5242	0.47	+1.5
5,237,685	+		GFF5242	0.47	+0.9
5,237,692	-		GFF5242	0.47	+0.7
5,237,693	-		GFF5242	0.47	-1.4
5,237,693	-		GFF5242	0.47	+0.3
5,237,693	-		GFF5242	0.47	+0.4
5,237,693	-		GFF5242	0.47	+0.2
5,237,693	-		GFF5242	0.47	-0.3
5,237,693	-		GFF5242	0.47	+0.6
5,237,693	-		GFF5242	0.47	-0.3
5,237,693	-		GFF5242	0.47	+0.5
5,237,703	-		GFF5242	0.48	+0.2
5,237,738	+		GFF5242	0.52	-0.6
5,237,740	-		GFF5242	0.52	-0.1
5,237,751	-		GFF5242	0.53	-0.9
5,237,751	-		GFF5242	0.53	-1.3
5,237,756	-		GFF5242	0.54	+0.4
5,237,797	-		GFF5242	0.58	+0.4
5,237,830	+		GFF5242	0.62	-1.1
5,237,831	+		GFF5242	0.62	+0.7
5,237,832	+		GFF5242	0.62	+0.5
5,237,832	+		GFF5242	0.62	-0.5
5,237,836	+		GFF5242	0.62	-0.7
5,237,846	+		GFF5242	0.63	-0.9
5,237,867	-		GFF5242	0.65	+0.0
5,237,877	+		GFF5242	0.66	+0.4
5,237,885	-		GFF5242	0.67	-0.5
5,237,894	+		GFF5242	0.68	+0.7
5,237,912	+		GFF5242	0.70	+0.3
5,237,920	-		GFF5242	0.71	+0.0
5,237,923	+		GFF5242	0.71	+1.2
5,237,935	-		GFF5242	0.72	+0.7
5,237,940	+		GFF5242	0.73	+0.0
5,237,940	+		GFF5242	0.73	-2.1
5,237,940	+		GFF5242	0.73	-0.0
5,237,940	+		GFF5242	0.73	-0.3
5,237,946	+		GFF5242	0.73	-0.4
5,237,948	-		GFF5242	0.74	-1.0
5,237,948	-		GFF5242	0.74	-0.7
5,237,948	-		GFF5242	0.74	+0.6
5,237,948	-		GFF5242	0.74	+0.6
5,237,951	+		GFF5242	0.74	+0.4
5,237,951	+		GFF5242	0.74	-0.7
5,237,951	+		GFF5242	0.74	-0.1
5,237,951	+		GFF5242	0.74	-1.2
5,237,954	-		GFF5242	0.74	-1.9
5,237,956	+		GFF5242	0.75	-0.6
5,237,956	+		GFF5242	0.75	-1.0
5,237,956	+		GFF5242	0.75	+0.9
5,237,959	-		GFF5242	0.75	-2.1
5,237,959	-		GFF5242	0.75	-1.4
5,237,959	-		GFF5242	0.75	+0.8
5,237,959	-		GFF5242	0.75	-0.2
5,237,961	+		GFF5242	0.75	+0.0
5,237,961	+		GFF5242	0.75	-0.1
5,237,961	+		GFF5242	0.75	+1.2
5,237,961	+		GFF5242	0.75	-1.1
5,237,964	-		GFF5242	0.75	-0.0
5,237,969	-		GFF5242	0.76	+0.4
5,237,989	+		GFF5242	0.78	-0.0
5,237,992	-		GFF5242	0.78	-1.7
5,237,997	-		GFF5242	0.79	+1.3
5,238,039	+		GFF5242	0.83	-0.3
5,238,039	+		GFF5242	0.83	+0.4
5,238,039	+		GFF5242	0.83	-2.0
5,238,039	+		GFF5242	0.83	+0.9
5,238,039	+		GFF5242	0.83	+1.5
5,238,039	-		GFF5242	0.83	-2.0
5,238,047	-		GFF5242	0.84	+1.1
5,238,047	-		GFF5242	0.84	-0.2
5,238,047	-		GFF5242	0.84	+0.3
5,238,073	-		GFF5242	0.87	-0.5
5,238,081	-		GFF5242	0.87	-0.2
5,238,127	-				+0.5
5,238,145	+				-2.1
5,238,155	+				+0.5
5,238,155	+				-0.2
5,238,155	+				-1.1
5,238,155	+				+0.4
5,238,155	+				+0.9
5,238,155	+				-0.1
5,238,163	-				-0.4
5,238,163	-				+0.6
5,238,174	-				+0.4
5,238,220	+				+0.3
5,238,222	+				+0.1
5,238,222	+				-0.9
5,238,222	-				-0.1
5,238,230	-				+1.0
5,238,230	-				+0.2
5,238,230	-				-0.5
5,238,272	-				-0.2
5,238,278	+				-0.6
5,238,289	+		GFF5243	0.10	+0.7
5,238,289	+		GFF5243	0.10	+0.8
5,238,294	+		GFF5243	0.11	+2.1
5,238,294	+		GFF5243	0.11	+1.5
5,238,294	+		GFF5243	0.11	+0.5
5,238,297	-		GFF5243	0.11	-0.5
5,238,302	-		GFF5243	0.12	-0.5
5,238,302	-		GFF5243	0.12	-1.2
5,238,320	+		GFF5243	0.15	+1.0
5,238,320	+		GFF5243	0.15	+0.4
5,238,320	+		GFF5243	0.15	-0.0
5,238,328	-		GFF5243	0.16	+1.2
5,238,328	-		GFF5243	0.16	-0.4
5,238,328	-		GFF5243	0.16	+0.5
5,238,347	+		GFF5243	0.18	-1.6
5,238,347	+		GFF5243	0.18	-0.0
5,238,347	+		GFF5243	0.18	+0.8
5,238,355	-		GFF5243	0.20	+0.8
5,238,379	+		GFF5243	0.23	-0.5
5,238,454	-		GFF5243	0.34	-1.3
5,238,462	-		GFF5243	0.35	-0.3
5,238,464	-		GFF5243	0.35	+0.2
5,238,516	-		GFF5243	0.42	+0.1
5,238,527	+		GFF5243	0.44	-0.8
5,238,535	-		GFF5243	0.45	+0.8
5,238,535	-		GFF5243	0.45	+0.7
5,238,561	+		GFF5243	0.49	-0.3
5,238,561	+		GFF5243	0.49	+0.1
5,238,561	+		GFF5243	0.49	-2.2
5,238,569	-		GFF5243	0.50	+0.9
5,238,569	-		GFF5243	0.50	-0.0
5,238,569	-		GFF5243	0.50	-1.8
5,238,650	-		GFF5243	0.61	+0.2
5,238,660	+		GFF5243	0.63	+0.7
5,238,660	+		GFF5243	0.63	-0.5
5,238,660	+		GFF5243	0.63	-0.9
5,238,668	-		GFF5243	0.64	+0.6
5,238,684	+		GFF5243	0.66	+0.7
5,238,684	+		GFF5243	0.66	-0.3
5,238,684	+		GFF5243	0.66	+0.5
5,238,684	+		GFF5243	0.66	-0.1
5,238,684	+		GFF5243	0.66	-0.1
5,238,684	+		GFF5243	0.66	-0.4
5,238,684	+		GFF5243	0.66	+0.5
5,238,692	-		GFF5243	0.67	-0.7
5,238,692	-		GFF5243	0.67	-0.6
5,238,692	-		GFF5243	0.67	-0.5
5,238,692	-		GFF5243	0.67	-1.3
5,238,697	+		GFF5243	0.68	-2.1
5,238,697	+		GFF5243	0.68	-0.5
5,238,705	-		GFF5243	0.69	+0.1
5,238,705	-		GFF5243	0.69	-1.1
5,238,712	+		GFF5243	0.70	-0.8
5,238,725	-		GFF5243	0.72	+0.8
5,238,748	-		GFF5243	0.75	-0.7
5,238,758	-		GFF5243	0.77	-0.9
5,238,760	+		GFF5243	0.77	+0.9
5,238,769	+		GFF5243	0.78	-0.8
5,238,798	+		GFF5243	0.82	+0.2
5,238,824	-		GFF5243	0.86	+0.3
5,238,831	+		GFF5243	0.87	+0.6
5,238,850	+		GFF5243	0.90	+0.6
5,238,853	-				-0.1
5,238,863	-				+1.0
5,238,884	-				-0.9
5,238,908	+				-2.2
5,238,908	+				-0.3
5,238,913	+				+0.7
5,238,913	-				+0.1
5,238,921	-				-0.7
5,238,933	+				+0.2
5,238,962	+				+0.6
5,238,985	-				-0.5
5,238,985	-				+0.3
5,239,018	-				+0.3
5,239,019	+				-0.9
5,239,019	+				+0.9
5,239,029	+				+0.4
5,239,029	+				+0.7
5,239,029	+				-1.4
5,239,029	+				-0.0
5,239,029	+				-0.8
5,239,029	+				-0.5
5,239,029	+				+0.1
5,239,029	+				+0.7
5,239,029	+				-0.4
5,239,032	-				-1.8
5,239,037	-				+0.5
5,239,037	-				-0.5
5,239,037	-				-0.2
5,239,037	-				-0.2
5,239,037	-				+0.1
5,239,037	-				+0.2
5,239,037	-				+0.1
5,239,043	+				-1.3
5,239,044	-				-0.9
5,239,044	-				-0.9
5,239,058	+				-1.1
5,239,061	-				-1.1
5,239,061	-				-0.5
5,239,067	+				+0.2
5,239,067	+				+0.5
5,239,075	-				-0.1
5,239,075	-				-2.6
5,239,075	-				+0.5
5,239,075	-				+0.3
5,239,076	-				-0.9
5,239,093	+				-0.4
5,239,093	+				-1.2
5,239,101	-				+0.4
5,239,102	-				-0.3
5,239,118	+				+0.7
5,239,134	+				-2.8
5,239,134	+				+1.8
5,239,134	+				-0.4
5,239,134	+				-0.5
5,239,134	+				+2.0
5,239,134	+				-1.3
5,239,134	+				-1.2
5,239,134	+				-1.3
5,239,134	+				+0.2
5,239,134	+				+1.1
5,239,134	+				-1.7
5,239,134	+				+1.1
5,239,134	+				-2.2
5,239,134	+				+0.6
5,239,134	+				-0.7
5,239,134	+				-2.2
5,239,134	+				+0.7
5,239,134	+				+1.0
5,239,134	+				-0.7
5,239,134	+				+1.1
5,239,134	+				-2.0
5,239,134	+				+0.1
5,239,140	-				+1.2
5,239,142	-				+0.5
5,239,142	-				-0.6
5,239,142	-				+0.9
5,239,142	-				+1.0
5,239,142	-				-0.1
5,239,142	-				+0.4
5,239,142	-				+1.0
5,239,142	-				-1.6
5,239,142	-				+0.6
5,239,142	-				-0.2
5,239,142	-				+1.2
5,239,142	-				+1.4
5,239,142	-				+1.4
5,239,142	-				+0.6
5,239,142	-				-0.9
5,239,142	-				+0.1
5,239,142	-				+0.2
5,239,142	-				-0.1
5,239,142	-				+0.4
5,239,142	-				-0.3
5,239,142	-				+0.6
5,239,144	+				-0.0
5,239,144	+				+0.0
5,239,144	+				-0.3
5,239,179	+				-0.4
5,239,187	-				+1.3
5,239,187	-				+0.2
5,239,187	-				-0.1
5,239,211	-				+1.0
5,239,211	-				-0.6
5,239,256	+		GFF5244	0.13	+0.7
5,239,264	-		GFF5244	0.14	-0.4
5,239,264	-		GFF5244	0.14	+1.4
5,239,264	-		GFF5244	0.14	-0.3
5,239,264	-		GFF5244	0.14	-1.7
5,239,264	-		GFF5244	0.14	-0.3
5,239,264	-		GFF5244	0.14	+0.0
5,239,264	-		GFF5244	0.14	+0.6
5,239,264	-		GFF5244	0.14	+0.1
5,239,267	+		GFF5244	0.14	-1.1
5,239,267	+		GFF5244	0.14	+0.0
5,239,272	+		GFF5244	0.14	-0.7
5,239,272	+		GFF5244	0.14	-2.1
5,239,280	-		GFF5244	0.15	-1.4
5,239,308	-		GFF5244	0.17	-0.4
5,239,318	-		GFF5244	0.17	-2.3
5,239,367	+		GFF5244	0.21	-0.2
5,239,369	-		GFF5244	0.21	+0.2
5,239,375	-		GFF5244	0.21	+1.4
5,239,375	-		GFF5244	0.21	-0.7
5,239,375	-		GFF5244	0.21	+0.2
5,239,386	-		GFF5244	0.22	-0.3
5,239,393	+		GFF5244	0.23	+0.3
5,239,420	+		GFF5244	0.25	+0.2
5,239,425	+		GFF5244	0.25	-0.1
5,239,428	-		GFF5244	0.25	+1.6
5,239,450	+		GFF5244	0.27	-0.3
5,239,452	+		GFF5244	0.27	-0.1
5,239,458	-		GFF5244	0.27	+1.0
5,239,458	-		GFF5244	0.27	+0.4
5,239,495	-		GFF5244	0.30	+0.8
5,239,507	+		GFF5244	0.31	+0.3
5,239,510	+		GFF5244	0.31	+0.2
5,239,510	+		GFF5244	0.31	-2.4
5,239,512	+		GFF5244	0.31	+0.1
5,239,537	+		GFF5244	0.33	+0.6
5,239,537	+		GFF5244	0.33	-0.6
5,239,537	+		GFF5244	0.33	+0.3
5,239,540	-		GFF5244	0.33	+0.5
5,239,542	+		GFF5244	0.33	+0.4
5,239,542	+		GFF5244	0.33	+1.7
5,239,542	+		GFF5244	0.33	-0.4
5,239,545	-		GFF5244	0.33	+0.5
5,239,545	-		GFF5244	0.33	-0.5
5,239,550	-		GFF5244	0.34	+1.2
5,239,550	-		GFF5244	0.34	+0.9
5,239,550	-		GFF5244	0.34	-0.1
5,239,552	-		GFF5244	0.34	+0.8
5,239,571	-		GFF5244	0.35	+0.1
5,239,573	+		GFF5244	0.35	+0.3
5,239,574	+		GFF5244	0.35	+0.7
5,239,581	-		GFF5244	0.36	-2.1
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