Strain Fitness in Sphingobium sp. HT1-2 around GFF5164

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,153,800	+				-1.6
5,153,800	+				+1.0
5,153,808	-				-2.6
5,153,808	-				-0.9
5,153,808	-				-0.7
5,153,816	-				-0.6
5,153,822	+		GFF5162	0.10	-0.5
5,153,822	+		GFF5162	0.10	-0.8
5,153,822	+		GFF5162	0.10	-0.4
5,153,830	-		GFF5162	0.12	-1.9
5,153,848	+		GFF5162	0.15	-0.5
5,153,855	+		GFF5162	0.16	+0.2
5,153,856	-		GFF5162	0.17	-2.4
5,153,861	+		GFF5162	0.18	+0.0
5,153,913	+		GFF5162	0.27	+0.6
5,153,933	+		GFF5162	0.31	-1.4
5,153,943	+		GFF5162	0.33	-1.1
5,153,965	-		GFF5162	0.37	-1.3
5,153,998	+		GFF5162	0.44	+0.4
5,153,998	-		GFF5162	0.44	-0.8
5,154,016	+		GFF5162	0.47	-0.6
5,154,024	-		GFF5162	0.48	-0.5
5,154,053	+		GFF5162	0.54	+0.7
5,154,064	+		GFF5162	0.56	+0.8
5,154,073	+		GFF5162	0.58	-0.5
5,154,073	+		GFF5162	0.58	-1.8
5,154,081	+		GFF5162	0.59	+0.5
5,154,089	+		GFF5162	0.61	+0.2
5,154,089	+		GFF5162	0.61	+0.1
5,154,097	-		GFF5162	0.62	-0.0
5,154,097	-		GFF5162	0.62	-0.8
5,154,097	-		GFF5162	0.62	+0.1
5,154,108	+		GFF5162	0.64	+0.5
5,154,113	+		GFF5162	0.65	-0.6
5,154,121	+		GFF5162	0.67	-0.4
5,154,121	-		GFF5162	0.67	-0.9
5,154,129	-		GFF5162	0.68	-1.5
5,154,131	+		GFF5162	0.69	-0.3
5,154,153	+		GFF5162	0.73	-0.4
5,154,154	+		GFF5162	0.73	-1.1
5,154,161	-		GFF5162	0.74	-1.1
5,154,183	-		GFF5162	0.79	-1.0
5,154,189	+		GFF5162	0.80	-1.7
5,154,189	+		GFF5162	0.80	-0.2
5,154,189	+		GFF5162	0.80	+0.1
5,154,189	+		GFF5162	0.80	-0.7
5,154,189	+		GFF5162	0.80	-0.1
5,154,189	+		GFF5162	0.80	-2.6
5,154,197	-		GFF5162	0.81	-0.2
5,154,197	-		GFF5162	0.81	-1.3
5,154,201	-		GFF5162	0.82	+0.2
5,154,247	+				-0.2
5,154,302	-				-2.1
5,154,303	-				-1.1
5,154,303	-				-1.0
5,154,305	-				-1.0
5,154,316	+				-0.5
5,154,324	+				-0.7
5,154,334	-				-0.1
5,154,335	+				-0.5
5,154,342	+		GFF5163	0.11	-0.8
5,154,343	-		GFF5163	0.11	-1.0
5,154,351	+		GFF5163	0.15	-0.2
5,154,383	+		GFF5163	0.29	+0.3
5,154,384	+		GFF5163	0.29	-1.9
5,154,417	-		GFF5163	0.43	-2.1
5,154,421	-		GFF5163	0.45	-1.2
5,154,427	-		GFF5163	0.48	+0.9
5,154,442	+		GFF5163	0.54	+0.6
5,154,442	-		GFF5163	0.54	-2.1
5,154,442	-		GFF5163	0.54	+0.8
5,154,457	+		GFF5163	0.61	-0.8
5,154,464	-		GFF5163	0.64	+0.4
5,154,476	-		GFF5163	0.69	-0.2
5,154,494	-		GFF5163	0.77	+0.3
5,154,494	-		GFF5163	0.77	-1.7
5,154,500	+		GFF5163	0.79	-0.6
5,154,505	+		GFF5163	0.81	+0.1
5,154,505	+		GFF5163	0.81	-2.2
5,154,505	+		GFF5163	0.81	-0.2
5,154,508	-		GFF5163	0.83	-1.3
5,154,508	-		GFF5163	0.83	-0.7
5,154,518	-		GFF5163	0.87	-0.2
5,154,535	-				+1.4
5,154,535	-				-1.1
5,154,535	-				-1.2
5,154,536	+				-1.8
5,154,536	+				+0.8
5,154,536	+				-0.4
5,154,536	-				-1.4
5,154,544	-				-0.8
5,154,544	-				-1.5
5,154,544	-				-2.5
5,154,544	-				+0.1
5,154,544	-				-0.3
5,154,551	-				-0.7
5,154,558	-				-0.5
5,154,561	-				+0.6
5,154,576	+				+0.6
5,154,576	+				+0.4
5,154,584	-				+0.9
5,154,584	-				-0.4
5,154,584	-				-0.3
5,154,603	-				+0.5
5,154,624	+				+0.3
5,154,628	-				+0.2
5,154,632	-				+0.8
5,154,652	+				+0.7
5,154,657	-				-0.4
5,154,669	+				+0.4
5,154,669	+				-0.1
5,154,669	+				-2.0
5,154,677	-				-2.9
5,154,677	-				-0.1
5,154,677	-				-2.0
5,154,677	-				-1.1
5,154,677	-				+0.8
5,154,679	-				-2.1
5,154,683	+				+1.2
5,154,692	+				-1.0
5,154,699	+				-1.1
5,154,699	+				-0.5
5,154,699	+				+0.1
5,154,699	+				-2.1
5,154,700	-				+1.1
5,154,707	-				+0.6
5,154,707	-				+1.0
5,154,707	-				-0.3
5,154,707	-				-1.2
5,154,719	+				-1.0
5,154,719	+				+0.4
5,154,719	+				-0.4
5,154,719	+				-1.3
5,154,719	+				+1.6
5,154,720	-				+0.3
5,154,727	-				-1.2
5,154,727	-				-1.3
5,154,727	-				+1.0
5,154,727	-				+0.6
5,154,728	+				+0.6
5,154,738	+				+0.3
5,154,738	+				-0.1
5,154,738	+				+0.8
5,154,738	+				+0.2
5,154,738	+				+0.6
5,154,738	+				-2.2
5,154,738	+				+0.5
5,154,738	+				-0.5
5,154,744	+				-1.0
5,154,744	+				-2.0
5,154,746	-				-0.3
5,154,746	-				-0.6
5,154,746	-				-0.4
5,154,751	-				-0.2
5,154,759	+				+0.1
5,154,802	+		GFF5164	0.15	-2.3
5,154,804	+		GFF5164	0.15	+0.2
5,154,822	-		GFF5164	0.19	-2.4
5,154,827	-		GFF5164	0.19	-0.5
5,154,827	-		GFF5164	0.19	-1.2
5,154,878	-		GFF5164	0.28	-2.0
5,154,909	+		GFF5164	0.33	+0.6
5,154,936	+		GFF5164	0.38	-0.3
5,154,936	+		GFF5164	0.38	-2.2
5,154,936	+		GFF5164	0.38	-0.3
5,154,939	-		GFF5164	0.38	-1.7
5,154,944	-		GFF5164	0.39	-0.3
5,154,944	-		GFF5164	0.39	-2.1
5,154,944	-		GFF5164	0.39	+1.4
5,154,946	-		GFF5164	0.40	-0.4
5,154,978	+		GFF5164	0.45	+1.5
5,154,985	+		GFF5164	0.46	-0.3
5,154,986	+		GFF5164	0.46	-2.0
5,154,990	+		GFF5164	0.47	-1.1
5,154,991	+		GFF5164	0.47	-1.7
5,155,021	+		GFF5164	0.52	-0.0
5,155,021	+		GFF5164	0.52	-0.6
5,155,029	-		GFF5164	0.54	+0.9
5,155,033	-		GFF5164	0.54	-0.3
5,155,035	+		GFF5164	0.55	-0.6
5,155,041	+		GFF5164	0.56	-2.0
5,155,041	+		GFF5164	0.56	-0.5
5,155,044	+		GFF5164	0.56	+0.3
5,155,044	+		GFF5164	0.56	-0.4
5,155,044	+		GFF5164	0.56	+0.9
5,155,044	+		GFF5164	0.56	-1.4
5,155,044	+		GFF5164	0.56	-1.0
5,155,044	+		GFF5164	0.56	-1.7
5,155,044	+		GFF5164	0.56	+0.0
5,155,044	+		GFF5164	0.56	-1.6
5,155,044	+		GFF5164	0.56	-0.7
5,155,046	+		GFF5164	0.57	-0.1
5,155,046	+		GFF5164	0.57	-0.3
5,155,049	-		GFF5164	0.57	-1.2
5,155,052	-		GFF5164	0.58	+1.2
5,155,052	-		GFF5164	0.58	+0.2
5,155,052	-		GFF5164	0.58	-0.1
5,155,052	-		GFF5164	0.58	-0.5
5,155,052	-		GFF5164	0.58	-0.1
5,155,052	-		GFF5164	0.58	-1.4
5,155,052	-		GFF5164	0.58	-0.2
5,155,053	+		GFF5164	0.58	+0.6
5,155,053	-		GFF5164	0.58	+0.8
5,155,054	-		GFF5164	0.58	-1.3
5,155,061	-		GFF5164	0.59	-0.7
5,155,061	-		GFF5164	0.59	-0.3
5,155,077	+		GFF5164	0.62	-0.6
5,155,077	+		GFF5164	0.62	+0.8
5,155,082	+		GFF5164	0.63	+0.4
5,155,085	-		GFF5164	0.63	-1.2
5,155,087	+		GFF5164	0.64	-0.7
5,155,087	-		GFF5164	0.64	+1.4
5,155,088	+		GFF5164	0.64	-0.3
5,155,090	-		GFF5164	0.64	+1.7
5,155,095	-		GFF5164	0.65	-1.2
5,155,106	+		GFF5164	0.67	-2.6
5,155,220	-		GFF5164	0.86	-0.7
5,155,241	+		GFF5164	0.90	+0.2
5,155,248	+				+0.2
5,155,248	+				-0.3
5,155,248	+				-0.6
5,155,256	-				+0.1
5,155,256	-				-1.6
5,155,257	-				+0.4
5,155,279	+				+1.5
5,155,280	-				-1.8
5,155,304	-				-0.3
5,155,332	+				-1.3
5,155,340	-				-3.6
5,155,340	-				+0.6
5,155,340	-				-1.2
5,155,400	-				-0.0
5,155,409	-				-0.5
5,155,424	-				+0.1
5,155,426	+				-0.8
5,155,429	-				-0.7
5,155,434	-				-0.7
5,155,450	+				-1.2
5,155,450	+				-0.5
5,155,458	-				+0.4
5,155,458	-				-0.9
5,155,458	-				-0.1
5,155,458	-				-0.6
5,155,473	+				-0.3
5,155,481	-				-0.0
5,155,482	+				+0.6
5,155,487	-				-0.1
5,155,490	+				+0.7
5,155,507	+		GFF5165	0.10	-0.5
5,155,515	-		GFF5165	0.10	+0.1
5,155,530	-		GFF5165	0.11	-1.2
5,155,535	+		GFF5165	0.11	-0.0
5,155,546	-		GFF5165	0.12	-0.5
5,155,597	+		GFF5165	0.14	-1.0
5,155,605	-		GFF5165	0.14	-0.2
5,155,628	-		GFF5165	0.15	-2.0
5,155,648	+		GFF5165	0.16	-2.4
5,155,651	-		GFF5165	0.16	-1.2
5,155,656	-		GFF5165	0.16	+0.4
5,155,656	-		GFF5165	0.16	-0.2
5,155,656	-		GFF5165	0.16	+0.0
5,155,672	+		GFF5165	0.17	-0.4
5,155,676	+		GFF5165	0.17	+1.2
5,155,693	+		GFF5165	0.18	-1.2
5,155,696	-		GFF5165	0.18	+0.1
5,155,701	-		GFF5165	0.18	-1.1
5,155,703	+		GFF5165	0.18	-2.2
5,155,728	-		GFF5165	0.20	-0.3
5,155,735	-		GFF5165	0.20	-2.2
5,155,741	+		GFF5165	0.20	+0.0
5,155,744	-		GFF5165	0.20	-1.4
5,155,771	+		GFF5165	0.21	+0.8
5,155,772	+		GFF5165	0.21	-1.2
5,155,772	+		GFF5165	0.21	-0.3
5,155,772	+		GFF5165	0.21	-0.3
5,155,772	+		GFF5165	0.21	+1.0
5,155,779	-		GFF5165	0.22	-1.1
5,155,780	-		GFF5165	0.22	-1.3
5,155,780	-		GFF5165	0.22	-1.2
5,155,782	+		GFF5165	0.22	-0.6
5,155,790	-		GFF5165	0.22	+0.4
5,155,790	-		GFF5165	0.22	-0.5
5,155,790	-		GFF5165	0.22	-0.3
5,155,790	-		GFF5165	0.22	-1.1
5,155,807	+		GFF5165	0.23	+0.3
5,155,809	+		GFF5165	0.23	-1.6
5,155,817	-		GFF5165	0.23	-0.2
5,155,817	-		GFF5165	0.23	-0.9
5,155,817	-		GFF5165	0.23	-2.0
5,155,830	+		GFF5165	0.24	-0.3
5,155,830	+		GFF5165	0.24	-3.1
5,155,848	+		GFF5165	0.25	+0.2
5,155,849	+		GFF5165	0.25	+1.1
5,155,854	+		GFF5165	0.25	-0.1
5,155,854	+		GFF5165	0.25	-0.8
5,155,862	-		GFF5165	0.25	-0.5
5,155,867	-		GFF5165	0.26	-1.7
5,155,875	-		GFF5165	0.26	-1.4
5,155,875	-		GFF5165	0.26	-0.5
5,155,883	-		GFF5165	0.26	-0.9
5,155,883	-		GFF5165	0.26	-0.9
5,155,910	+		GFF5165	0.27	+0.7
5,155,910	+		GFF5165	0.27	+0.4
5,155,932	+		GFF5165	0.28	-0.2
5,155,934	+		GFF5165	0.28	-1.3
5,155,934	+		GFF5165	0.28	+1.1
5,155,934	+		GFF5165	0.28	-1.4
5,155,934	+		GFF5165	0.28	-0.3
5,155,934	+		GFF5165	0.28	-0.1
5,155,934	+		GFF5165	0.28	-0.7
5,155,940	-		GFF5165	0.29	+0.0
5,155,940	-		GFF5165	0.29	-0.2
5,155,941	+		GFF5165	0.29	-0.2
5,155,942	-		GFF5165	0.29	-2.5
5,155,942	-		GFF5165	0.29	-0.6
5,155,942	-		GFF5165	0.29	-0.8
5,155,942	-		GFF5165	0.29	-0.2
5,155,942	-		GFF5165	0.29	-0.4
5,155,942	-		GFF5165	0.29	-1.7
5,155,942	-		GFF5165	0.29	+0.4
5,155,942	-		GFF5165	0.29	-0.2
5,155,942	-		GFF5165	0.29	-2.1
5,155,942	-		GFF5165	0.29	+0.5
5,155,963	-		GFF5165	0.30	-1.6
5,155,963	-		GFF5165	0.30	-2.1
5,155,963	-		GFF5165	0.30	+0.3
5,155,976	+		GFF5165	0.30	-1.1
5,155,976	+		GFF5165	0.30	-0.6
5,155,976	+		GFF5165	0.30	-0.5
5,155,976	+		GFF5165	0.30	-0.1
5,155,984	-		GFF5165	0.31	+1.0
5,155,984	-		GFF5165	0.31	-1.2
5,155,984	-		GFF5165	0.31	-0.0
5,155,984	-		GFF5165	0.31	-0.3
5,155,984	-		GFF5165	0.31	-0.2
5,155,989	-		GFF5165	0.31	-0.5
5,156,006	+		GFF5165	0.32	-0.6
5,156,015	+		GFF5165	0.32	-1.4
5,156,021	+		GFF5165	0.32	-1.1
5,156,021	-		GFF5165	0.32	-1.6
5,156,023	+		GFF5165	0.32	-0.6
5,156,023	+		GFF5165	0.32	-2.4
5,156,023	-		GFF5165	0.32	-0.3
5,156,026	+		GFF5165	0.32	-0.3
5,156,028	+		GFF5165	0.32	+0.3
5,156,029	-		GFF5165	0.33	-1.7
5,156,031	-		GFF5165	0.33	-1.0
5,156,031	-		GFF5165	0.33	-1.9
5,156,031	-		GFF5165	0.33	-0.7
5,156,036	-		GFF5165	0.33	+0.4
5,156,046	+		GFF5165	0.33	-1.5
5,156,046	+		GFF5165	0.33	+0.2
5,156,046	+		GFF5165	0.33	-0.6
5,156,053	+		GFF5165	0.34	-0.9
5,156,054	-		GFF5165	0.34	-0.9
5,156,054	-		GFF5165	0.34	+1.2
5,156,081	-		GFF5165	0.35	-2.3
5,156,087	-		GFF5165	0.35	+0.1
5,156,088	+		GFF5165	0.35	-0.3
5,156,088	-		GFF5165	0.35	-0.2
5,156,092	+		GFF5165	0.35	+0.3
5,156,132	-		GFF5165	0.37	-1.3
5,156,134	+		GFF5165	0.37	-0.6
5,156,138	+		GFF5165	0.37	-1.5
5,156,151	-		GFF5165	0.38	-1.4
5,156,161	+		GFF5165	0.38	-0.8
5,156,178	-		GFF5165	0.39	-2.7
5,156,197	+		GFF5165	0.40	-0.7
5,156,205	+		GFF5165	0.40	+0.0
5,156,205	-		GFF5165	0.40	-0.2
5,156,205	-		GFF5165	0.40	-0.5
5,156,242	+		GFF5165	0.42	-1.0
5,156,242	+		GFF5165	0.42	-0.7
5,156,242	+		GFF5165	0.42	+0.8
5,156,248	-		GFF5165	0.42	+0.8
5,156,250	-		GFF5165	0.42	-0.9
5,156,250	-		GFF5165	0.42	-0.4
5,156,257	-		GFF5165	0.42	-0.7
5,156,266	-		GFF5165	0.43	-1.9
5,156,275	+		GFF5165	0.43	-1.2
5,156,276	-		GFF5165	0.43	+0.4
5,156,276	-		GFF5165	0.43	+1.8
5,156,290	-		GFF5165	0.44	+0.5