Strain Fitness in Sphingobium sp. HT1-2 around GFF516

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF515 and GFF516 are separated by 3 nucleotidesGFF516 and GFF517 are separated by 95 nucleotides GFF515 - GTP-binding protein TypA/BipA, at 511,867 to 513,684 GFF515 GFF516 - hypothetical protein, at 513,688 to 513,810 GFF516 GFF517 - Carboxypeptidase-related protein, at 513,906 to 515,465 GFF517 Position (kb) 513 514Strain fitness (log2 ratio) -2 -1 0 1 2at 513.744 kb on - strand, within GFF516at 513.744 kb on - strand, within GFF516at 513.744 kb on - strand, within GFF516at 513.744 kb on - strand, within GFF516at 513.744 kb on - strand, within GFF516at 513.744 kb on - strand, within GFF516at 513.773 kb on + strand, within GFF516at 513.781 kb on - strand, within GFF516at 513.781 kb on - strand, within GFF516at 513.781 kb on - strand, within GFF516at 513.806 kb on + strandat 513.806 kb on + strandat 513.814 kb on - strandat 513.857 kb on + strandat 513.905 kb on - strandat 513.910 kb on - strandat 513.912 kb on - strandat 513.919 kb on - strandat 513.921 kb on + strandat 513.928 kb on + strandat 513.929 kb on - strandat 513.942 kb on - strandat 513.946 kb on + strandat 513.946 kb on + strandat 513.954 kb on - strandat 513.954 kb on - strandat 513.954 kb on - strandat 513.954 kb on - strandat 513.954 kb on - strandat 513.954 kb on - strandat 513.956 kb on + strandat 513.956 kb on + strandat 513.956 kb on + strandat 513.960 kb on + strandat 513.964 kb on - strandat 513.964 kb on - strandat 513.964 kb on - strandat 513.964 kb on - strandat 513.964 kb on - strandat 513.964 kb on - strandat 513.964 kb on - strandat 513.964 kb on - strandat 513.964 kb on - strandat 513.964 kb on - strandat 513.972 kb on + strandat 513.985 kb on - strandat 513.985 kb on - strandat 513.997 kb on + strandat 514.005 kb on - strandat 514.007 kb on - strandat 514.021 kb on + strandat 514.029 kb on - strandat 514.040 kb on + strandat 514.043 kb on - strandat 514.043 kb on - strandat 514.043 kb on - strandat 514.043 kb on - strandat 514.048 kb on - strandat 514.048 kb on - strandat 514.049 kb on - strandat 514.060 kb on - strandat 514.084 kb on - strand, within GFF517at 514.093 kb on - strand, within GFF517at 514.123 kb on - strand, within GFF517at 514.160 kb on + strand, within GFF517at 514.160 kb on + strand, within GFF517at 514.160 kb on + strand, within GFF517at 514.160 kb on + strand, within GFF517at 514.163 kb on - strand, within GFF517at 514.168 kb on - strand, within GFF517at 514.168 kb on - strand, within GFF517at 514.168 kb on - strand, within GFF517at 514.181 kb on + strand, within GFF517at 514.181 kb on + strand, within GFF517at 514.181 kb on + strand, within GFF517at 514.181 kb on + strand, within GFF517at 514.181 kb on + strand, within GFF517at 514.181 kb on + strand, within GFF517at 514.189 kb on - strand, within GFF517at 514.189 kb on - strand, within GFF517at 514.189 kb on - strand, within GFF517at 514.189 kb on - strand, within GFF517at 514.189 kb on - strand, within GFF517at 514.190 kb on + strand, within GFF517at 514.195 kb on + strand, within GFF517at 514.195 kb on + strand, within GFF517at 514.198 kb on - strand, within GFF517at 514.198 kb on - strand, within GFF517at 514.198 kb on - strand, within GFF517at 514.198 kb on - strand, within GFF517at 514.203 kb on - strand, within GFF517at 514.205 kb on + strand, within GFF517at 514.212 kb on - strand, within GFF517at 514.213 kb on - strand, within GFF517at 514.217 kb on + strand, within GFF517at 514.231 kb on - strand, within GFF517at 514.254 kb on + strand, within GFF517at 514.254 kb on + strand, within GFF517at 514.254 kb on + strand, within GFF517at 514.254 kb on + strand, within GFF517at 514.258 kb on + strand, within GFF517at 514.266 kb on - strand, within GFF517at 514.284 kb on + strand, within GFF517at 514.287 kb on - strand, within GFF517at 514.295 kb on + strand, within GFF517at 514.296 kb on + strand, within GFF517at 514.299 kb on - strand, within GFF517at 514.350 kb on + strand, within GFF517at 514.358 kb on - strand, within GFF517at 514.358 kb on - strand, within GFF517at 514.396 kb on - strand, within GFF517at 514.402 kb on + strand, within GFF517at 514.408 kb on - strand, within GFF517at 514.411 kb on + strand, within GFF517at 514.411 kb on + strand, within GFF517at 514.411 kb on + strand, within GFF517at 514.419 kb on - strand, within GFF517at 514.419 kb on - strand, within GFF517at 514.432 kb on - strand, within GFF517at 514.438 kb on - strand, within GFF517at 514.445 kb on + strand, within GFF517at 514.445 kb on + strand, within GFF517at 514.445 kb on + strand, within GFF517at 514.453 kb on + strand, within GFF517at 514.453 kb on - strand, within GFF517at 514.467 kb on + strand, within GFF517at 514.467 kb on + strand, within GFF517at 514.475 kb on - strand, within GFF517at 514.475 kb on - strand, within GFF517at 514.493 kb on + strand, within GFF517at 514.496 kb on - strand, within GFF517at 514.501 kb on - strand, within GFF517at 514.558 kb on - strand, within GFF517at 514.558 kb on - strand, within GFF517at 514.577 kb on + strand, within GFF517at 514.577 kb on + strand, within GFF517at 514.585 kb on - strand, within GFF517at 514.605 kb on + strand, within GFF517at 514.605 kb on + strand, within GFF517at 514.605 kb on + strand, within GFF517at 514.605 kb on + strand, within GFF517at 514.605 kb on + strand, within GFF517at 514.605 kb on + strand, within GFF517at 514.605 kb on + strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.613 kb on - strand, within GFF517at 514.615 kb on + strand, within GFF517at 514.620 kb on + strand, within GFF517at 514.627 kb on - strand, within GFF517at 514.628 kb on + strand, within GFF517at 514.636 kb on - strand, within GFF517at 514.636 kb on - strand, within GFF517at 514.670 kb on - strand, within GFF517at 514.670 kb on - strand, within GFF517at 514.691 kb on + strand, within GFF517at 514.696 kb on + strand, within GFF517at 514.696 kb on + strand, within GFF517at 514.696 kb on + strand, within GFF517at 514.696 kb on + strand, within GFF517at 514.696 kb on + strand, within GFF517at 514.696 kb on + strand, within GFF517at 514.704 kb on - strand, within GFF517at 514.704 kb on - strand, within GFF517at 514.704 kb on - strand, within GFF517at 514.704 kb on - strand, within GFF517at 514.704 kb on - strand, within GFF517at 514.704 kb on - strand, within GFF517at 514.719 kb on - strand, within GFF517at 514.739 kb on - strand, within GFF517at 514.750 kb on + strand, within GFF517at 514.752 kb on + strand, within GFF517at 514.758 kb on - strand, within GFF517at 514.758 kb on - strand, within GFF517at 514.760 kb on - strand, within GFF517at 514.766 kb on + strand, within GFF517

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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513,744 - GFF516 0.46 -1.0
513,744 - GFF516 0.46 -2.2
513,744 - GFF516 0.46 -0.0
513,744 - GFF516 0.46 +0.4
513,744 - GFF516 0.46 -1.8
513,744 - GFF516 0.46 -1.6
513,773 + GFF516 0.69 -0.5
513,781 - GFF516 0.76 -0.7
513,781 - GFF516 0.76 -1.5
513,781 - GFF516 0.76 -0.6
513,806 + +1.0
513,806 + -0.3
513,814 - -0.2
513,857 + -0.3
513,905 - -0.2
513,910 - -0.6
513,912 - -0.7
513,919 - +0.1
513,921 + +0.5
513,928 + -0.3
513,929 - -1.0
513,942 - -1.0
513,946 + -0.0
513,946 + -1.6
513,954 - -2.4
513,954 - -0.1
513,954 - -0.2
513,954 - -0.9
513,954 - -1.6
513,954 - -0.6
513,956 + -0.4
513,956 + +0.4
513,956 + -1.4
513,960 + -1.0
513,964 - -1.2
513,964 - +0.2
513,964 - +1.0
513,964 - -2.2
513,964 - +1.0
513,964 - -1.6
513,964 - +1.3
513,964 - +0.1
513,964 - +0.5
513,964 - -0.3
513,972 + -0.0
513,985 - -0.3
513,985 - +1.3
513,997 + +0.9
514,005 - -0.1
514,007 - -1.2
514,021 + +0.4
514,029 - -1.7
514,040 + -0.7
514,043 - -0.4
514,043 - -0.1
514,043 - +1.3
514,043 - +0.4
514,048 - +0.4
514,048 - -0.5
514,049 - -0.8
514,060 - -0.4
514,084 - GFF517 0.11 -0.9
514,093 - GFF517 0.12 -0.2
514,123 - GFF517 0.14 -1.0
514,160 + GFF517 0.16 +1.0
514,160 + GFF517 0.16 -0.9
514,160 + GFF517 0.16 -0.8
514,160 + GFF517 0.16 -0.1
514,163 - GFF517 0.16 +0.5
514,168 - GFF517 0.17 -1.9
514,168 - GFF517 0.17 -1.0
514,168 - GFF517 0.17 -1.3
514,181 + GFF517 0.18 -1.2
514,181 + GFF517 0.18 +0.1
514,181 + GFF517 0.18 -1.2
514,181 + GFF517 0.18 -0.8
514,181 + GFF517 0.18 -0.2
514,181 + GFF517 0.18 -1.2
514,189 - GFF517 0.18 -2.3
514,189 - GFF517 0.18 +0.3
514,189 - GFF517 0.18 +0.4
514,189 - GFF517 0.18 +0.8
514,189 - GFF517 0.18 -0.9
514,190 + GFF517 0.18 -1.0
514,195 + GFF517 0.19 -0.1
514,195 + GFF517 0.19 -0.4
514,198 - GFF517 0.19 -0.2
514,198 - GFF517 0.19 -2.1
514,198 - GFF517 0.19 +0.0
514,198 - GFF517 0.19 -2.4
514,203 - GFF517 0.19 +0.8
514,205 + GFF517 0.19 -0.0
514,212 - GFF517 0.20 -0.7
514,213 - GFF517 0.20 +0.4
514,217 + GFF517 0.20 +0.3
514,231 - GFF517 0.21 +0.3
514,254 + GFF517 0.22 -0.9
514,254 + GFF517 0.22 -0.6
514,254 + GFF517 0.22 +0.8
514,254 + GFF517 0.22 -1.5
514,258 + GFF517 0.23 -0.2
514,266 - GFF517 0.23 -0.8
514,284 + GFF517 0.24 -0.3
514,287 - GFF517 0.24 -0.6
514,295 + GFF517 0.25 +0.6
514,296 + GFF517 0.25 +0.8
514,299 - GFF517 0.25 -0.2
514,350 + GFF517 0.28 -0.1
514,358 - GFF517 0.29 +0.5
514,358 - GFF517 0.29 -1.0
514,396 - GFF517 0.31 +0.8
514,402 + GFF517 0.32 +0.8
514,408 - GFF517 0.32 +0.8
514,411 + GFF517 0.32 -2.4
514,411 + GFF517 0.32 +0.8
514,411 + GFF517 0.32 +0.5
514,419 - GFF517 0.33 -0.5
514,419 - GFF517 0.33 -1.6
514,432 - GFF517 0.34 +0.2
514,438 - GFF517 0.34 +0.3
514,445 + GFF517 0.35 +0.7
514,445 + GFF517 0.35 -0.0
514,445 + GFF517 0.35 -0.9
514,453 + GFF517 0.35 +0.7
514,453 - GFF517 0.35 -0.8
514,467 + GFF517 0.36 -0.2
514,467 + GFF517 0.36 -0.0
514,475 - GFF517 0.36 +0.5
514,475 - GFF517 0.36 -2.2
514,493 + GFF517 0.38 +0.8
514,496 - GFF517 0.38 +0.2
514,501 - GFF517 0.38 -0.7
514,558 - GFF517 0.42 -0.3
514,558 - GFF517 0.42 -1.3
514,577 + GFF517 0.43 -1.4
514,577 + GFF517 0.43 +0.7
514,585 - GFF517 0.44 +0.2
514,605 + GFF517 0.45 +1.8
514,605 + GFF517 0.45 -0.6
514,605 + GFF517 0.45 +0.6
514,605 + GFF517 0.45 -1.6
514,605 + GFF517 0.45 +0.4
514,605 + GFF517 0.45 +0.1
514,605 + GFF517 0.45 +0.2
514,613 - GFF517 0.45 +0.7
514,613 - GFF517 0.45 -1.8
514,613 - GFF517 0.45 -0.9
514,613 - GFF517 0.45 -0.4
514,613 - GFF517 0.45 +0.7
514,613 - GFF517 0.45 -0.8
514,613 - GFF517 0.45 -0.7
514,613 - GFF517 0.45 +0.8
514,613 - GFF517 0.45 -0.2
514,613 - GFF517 0.45 -1.2
514,613 - GFF517 0.45 -0.0
514,613 - GFF517 0.45 -0.3
514,613 - GFF517 0.45 -0.5
514,615 + GFF517 0.45 -0.4
514,620 + GFF517 0.46 -1.1
514,627 - GFF517 0.46 -0.6
514,628 + GFF517 0.46 -0.3
514,636 - GFF517 0.47 -1.2
514,636 - GFF517 0.47 +0.2
514,670 - GFF517 0.49 +0.2
514,670 - GFF517 0.49 +0.5
514,691 + GFF517 0.50 -0.6
514,696 + GFF517 0.51 -1.2
514,696 + GFF517 0.51 -1.2
514,696 + GFF517 0.51 -0.3
514,696 + GFF517 0.51 -1.4
514,696 + GFF517 0.51 -0.5
514,696 + GFF517 0.51 -0.3
514,704 - GFF517 0.51 +0.7
514,704 - GFF517 0.51 +0.7
514,704 - GFF517 0.51 -0.6
514,704 - GFF517 0.51 -2.4
514,704 - GFF517 0.51 -1.1
514,704 - GFF517 0.51 -2.3
514,719 - GFF517 0.52 -1.5
514,739 - GFF517 0.53 -0.5
514,750 + GFF517 0.54 +0.1
514,752 + GFF517 0.54 -0.5
514,758 - GFF517 0.55 -1.9
514,758 - GFF517 0.55 -0.2
514,760 - GFF517 0.55 +0.1
514,766 + GFF517 0.55 +1.1

Or see this region's nucleotide sequence