Strain Fitness in Sphingobium sp. HT1-2 around GFF5159

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,151,215	+		GFF5158	0.52	-0.6
5,151,215	-		GFF5158	0.52	+0.3
5,151,220	+		GFF5158	0.52	-0.6
5,151,220	+		GFF5158	0.52	-0.2
5,151,223	-		GFF5158	0.53	+0.9
5,151,228	-		GFF5158	0.53	+0.1
5,151,261	-		GFF5158	0.55	-0.3
5,151,268	+		GFF5158	0.55	-0.9
5,151,283	-		GFF5158	0.56	-0.0
5,151,290	+		GFF5158	0.56	+0.1
5,151,298	-		GFF5158	0.57	+0.2
5,151,298	-		GFF5158	0.57	-0.2
5,151,313	+		GFF5158	0.57	-1.1
5,151,321	-		GFF5158	0.58	-0.5
5,151,321	-		GFF5158	0.58	-0.4
5,151,323	+		GFF5158	0.58	-1.0
5,151,331	-		GFF5158	0.58	+0.5
5,151,331	-		GFF5158	0.58	-0.1
5,151,360	-		GFF5158	0.60	-0.0
5,151,361	-		GFF5158	0.60	-1.3
5,151,416	+		GFF5158	0.63	-0.6
5,151,426	+		GFF5158	0.63	+0.2
5,151,426	+		GFF5158	0.63	-1.9
5,151,437	-		GFF5158	0.64	-0.9
5,151,478	+		GFF5158	0.66	-1.6
5,151,478	-		GFF5158	0.66	-0.3
5,151,485	+		GFF5158	0.66	+1.0
5,151,490	+		GFF5158	0.67	-0.8
5,151,503	-		GFF5158	0.67	-0.7
5,151,503	-		GFF5158	0.67	+0.4
5,151,537	-		GFF5158	0.69	-0.1
5,151,547	-		GFF5158	0.70	+0.7
5,151,552	+		GFF5158	0.70	-0.6
5,151,557	+		GFF5158	0.70	-0.6
5,151,557	+		GFF5158	0.70	+0.0
5,151,557	+		GFF5158	0.70	-1.5
5,151,557	+		GFF5158	0.70	-0.4
5,151,565	-		GFF5158	0.71	-1.3
5,151,565	-		GFF5158	0.71	+0.5
5,151,565	-		GFF5158	0.71	+0.3
5,151,565	-		GFF5158	0.71	-0.3
5,151,574	+		GFF5158	0.71	-0.4
5,151,575	-		GFF5158	0.71	-1.2
5,151,579	+		GFF5158	0.71	-0.6
5,151,623	+		GFF5158	0.74	-1.4
5,151,632	+		GFF5158	0.74	-0.8
5,151,633	+		GFF5158	0.74	+0.5
5,151,633	+		GFF5158	0.74	-0.8
5,151,633	+		GFF5158	0.74	-1.9
5,151,640	-		GFF5158	0.74	-1.7
5,151,641	-		GFF5158	0.75	+0.3
5,151,648	+		GFF5158	0.75	-1.4
5,151,654	+		GFF5158	0.75	+0.4
5,151,654	+		GFF5158	0.75	+0.7
5,151,656	-		GFF5158	0.75	-0.1
5,151,656	-		GFF5158	0.75	-0.7
5,151,660	-		GFF5158	0.76	-2.8
5,151,662	-		GFF5158	0.76	+0.9
5,151,662	-		GFF5158	0.76	+0.1
5,151,662	-		GFF5158	0.76	+1.0
5,151,670	-		GFF5158	0.76	+1.7
5,151,672	+		GFF5158	0.76	-1.7
5,151,672	+		GFF5158	0.76	-2.6
5,151,674	+		GFF5158	0.76	-1.4
5,151,684	+		GFF5158	0.77	+0.2
5,151,726	+		GFF5158	0.79	-0.5
5,151,734	-		GFF5158	0.79	-2.7
5,151,757	-		GFF5158	0.81	-1.2
5,151,759	+		GFF5158	0.81	+0.2
5,151,778	-		GFF5158	0.82	-0.2
5,151,786	-		GFF5158	0.82	+0.2
5,151,795	-		GFF5158	0.83	+0.6
5,151,800	-		GFF5158	0.83	-0.1
5,151,807	-		GFF5158	0.83	-0.3
5,151,841	+		GFF5158	0.85	-1.9
5,151,926	+		GFF5158	0.90	-1.4
5,152,018	-				-2.2
5,152,042	+				-0.7
5,152,055	+				+1.2
5,152,101	+				+0.2
5,152,109	-				+0.0
5,152,153	-				-0.8
5,152,192	+				-0.1
5,152,192	+				+0.5
5,152,200	-				-0.7
5,152,202	+				+0.8
5,152,212	+				+1.9
5,152,212	+				-0.2
5,152,219	+				-0.5
5,152,225	+		GFF5159	0.10	-1.0
5,152,234	+		GFF5159	0.13	-0.7
5,152,234	+		GFF5159	0.13	+0.5
5,152,234	+		GFF5159	0.13	-0.2
5,152,234	+		GFF5159	0.13	-2.2
5,152,234	+		GFF5159	0.13	+0.1
5,152,234	+		GFF5159	0.13	-0.3
5,152,234	+		GFF5159	0.13	-0.2
5,152,252	+		GFF5159	0.18	-0.4
5,152,256	+		GFF5159	0.19	-1.0
5,152,264	-		GFF5159	0.22	-0.5
5,152,264	-		GFF5159	0.22	-0.8
5,152,264	-		GFF5159	0.22	-0.7
5,152,279	-		GFF5159	0.26	+0.1
5,152,279	-		GFF5159	0.26	-1.4
5,152,284	+		GFF5159	0.27	-1.4
5,152,284	+		GFF5159	0.27	+1.5
5,152,292	-		GFF5159	0.30	-0.8
5,152,297	-		GFF5159	0.31	-0.1
5,152,303	+		GFF5159	0.33	+0.0
5,152,343	-		GFF5159	0.45	-0.4
5,152,356	-		GFF5159	0.49	-0.2
5,152,391	-		GFF5159	0.59	-0.4
5,152,416	+		GFF5159	0.66	-0.7
5,152,417	-		GFF5159	0.66	-1.4
5,152,419	-		GFF5159	0.67	-2.1
5,152,433	+		GFF5159	0.71	+0.5
5,152,433	+		GFF5159	0.71	-1.1
5,152,442	+		GFF5159	0.74	-1.1
5,152,442	+		GFF5159	0.74	+1.1
5,152,443	+		GFF5159	0.74	+0.1
5,152,444	+		GFF5159	0.74	-0.3
5,152,450	-		GFF5159	0.76	-0.7
5,152,450	-		GFF5159	0.76	-1.7
5,152,450	-		GFF5159	0.76	+0.5
5,152,451	+		GFF5159	0.76	-0.2
5,152,451	-		GFF5159	0.76	-1.3
5,152,451	-		GFF5159	0.76	-1.4
5,152,451	-		GFF5159	0.76	+0.1
5,152,451	-		GFF5159	0.76	-0.4
5,152,451	-		GFF5159	0.76	+0.4
5,152,466	+		GFF5159	0.81	+1.0
5,152,473	+		GFF5159	0.83	-0.8
5,152,481	-		GFF5159	0.85	-1.2
5,152,493	+		GFF5159	0.89	-1.4
5,152,496	-		GFF5159	0.89	-0.6
5,152,496	-		GFF5159	0.89	-0.4
5,152,503	+				-0.4
5,152,511	-				-0.8
5,152,511	-				+0.2
5,152,521	+				-0.1
5,152,526	+				-0.2
5,152,529	-				-0.5
5,152,539	-				-1.1
5,152,608	+		GFF5160	0.26	-0.9
5,152,618	+		GFF5160	0.29	-1.2
5,152,626	-		GFF5160	0.32	-0.4
5,152,668	-		GFF5160	0.45	+0.2
5,152,675	+		GFF5160	0.48	-0.4
5,152,681	+		GFF5160	0.50	-2.3
5,152,689	-		GFF5160	0.52	-1.3
5,152,689	-		GFF5160	0.52	-0.1
5,152,689	-		GFF5160	0.52	-0.6
5,152,699	-		GFF5160	0.55	-0.1
5,152,704	-		GFF5160	0.57	-2.2
5,152,716	-		GFF5160	0.61	-1.9
5,152,718	-		GFF5160	0.61	-1.2
5,153,006	-				-1.5
5,153,011	+				+1.1
5,153,019	+				-1.7
5,153,019	+				+1.1
5,153,027	+				-0.4
5,153,027	+				+0.1
5,153,027	+				+0.5
5,153,035	-				-2.4
5,153,069	+				+0.4
5,153,069	+				-1.2
5,153,069	+				-0.0
5,153,069	+				-0.4
5,153,069	+				-1.8
5,153,069	+				-0.8
5,153,069	+				-0.1
5,153,069	+				-0.6
5,153,069	+				+0.2
5,153,069	+				-1.6
5,153,069	+				-0.7
5,153,069	+				-0.6
5,153,069	+				-0.8
5,153,069	+				-1.9
5,153,069	+				-1.4
5,153,069	+				-0.6
5,153,069	+				+0.8
5,153,069	+				+0.4
5,153,069	+				+1.2
5,153,069	+				-0.8
5,153,077	-				-0.1
5,153,077	-				-1.4
5,153,077	-				-1.2
5,153,077	-				-1.6
5,153,077	-				-1.8
5,153,077	-				-0.6
5,153,077	-				-1.9
5,153,080	+				-0.1
5,153,171	+		GFF5161	0.20	-1.2
5,153,202	-		GFF5161	0.24	-1.1
5,153,212	-		GFF5161	0.25	-1.2
5,153,227	-		GFF5161	0.27	-0.3
5,153,270	-		GFF5161	0.33	-1.5
5,153,292	-		GFF5161	0.36	-1.8
5,153,309	+		GFF5161	0.38	+0.9
5,153,331	+		GFF5161	0.41	-0.5
5,153,442	+		GFF5161	0.55	-0.4
5,153,483	+		GFF5161	0.61	+0.2
5,153,503	-		GFF5161	0.63	-0.1
5,153,503	-		GFF5161	0.63	-0.6
5,153,507	+		GFF5161	0.64	+0.4
5,153,512	+		GFF5161	0.65	-0.5
5,153,517	+		GFF5161	0.65	-0.1
5,153,517	+		GFF5161	0.65	-0.8
5,153,517	+		GFF5161	0.65	-2.8
5,153,517	+		GFF5161	0.65	-1.6
5,153,522	+		GFF5161	0.66	-0.9
5,153,525	-		GFF5161	0.66	-0.9
5,153,525	-		GFF5161	0.66	+0.8
5,153,530	-		GFF5161	0.67	-1.5