Strain Fitness in Sphingobium sp. HT1-2 around GFF5138

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,128,818	+				-0.1
5,128,818	+				-0.4
5,128,833	+				+0.1
5,128,841	-				+0.2
5,128,862	-				+1.2
5,128,926	+				-0.7
5,128,956	-				-0.3
5,128,999	+				-2.4
5,129,003	+				+1.1
5,129,003	+				-0.9
5,129,004	+				+1.0
5,129,023	-				-0.6
5,129,030	-				+0.5
5,129,040	-				+0.8
5,129,040	-				+0.0
5,129,080	-				+0.4
5,129,096	+				-1.1
5,129,101	+				+0.9
5,129,120	+				+0.9
5,129,120	+				+0.8
5,129,120	+				+0.0
5,129,120	+				-0.6
5,129,128	-				+0.2
5,129,133	-				+0.2
5,129,152	-				-0.1
5,129,154	+				-0.6
5,129,156	+				+0.6
5,129,156	+				-0.2
5,129,157	-				-0.5
5,129,159	-				+0.2
5,129,163	+				-0.9
5,129,163	+				-0.6
5,129,163	+				-0.5
5,129,164	-				-1.0
5,129,164	-				+0.7
5,129,177	+				+0.6
5,129,185	-				+0.9
5,129,185	-				-1.3
5,129,185	-				-0.7
5,129,187	+				-0.7
5,129,187	+				-1.8
5,129,187	+				-0.3
5,129,195	-				-0.5
5,129,195	-				-0.2
5,129,200	+				+0.4
5,129,205	+				-0.6
5,129,205	+				+0.2
5,129,208	-				+0.5
5,129,208	-				-0.7
5,129,213	-				-0.0
5,129,236	-				-0.5
5,129,238	-				+0.0
5,129,375	+		GFF5137	0.32	-0.2
5,129,410	+		GFF5137	0.37	+0.9
5,129,438	-		GFF5137	0.42	-0.8
5,129,438	-		GFF5137	0.42	-0.1
5,129,443	-		GFF5137	0.43	-0.9
5,129,443	-		GFF5137	0.43	+0.3
5,129,443	-		GFF5137	0.43	-0.2
5,129,448	-		GFF5137	0.44	-0.1
5,129,448	-		GFF5137	0.44	-0.3
5,129,453	-		GFF5137	0.44	-0.3
5,129,453	-		GFF5137	0.44	+0.5
5,129,453	-		GFF5137	0.44	-0.4
5,129,453	-		GFF5137	0.44	-1.2
5,129,493	+		GFF5137	0.51	-1.5
5,129,501	-		GFF5137	0.52	+0.4
5,129,501	-		GFF5137	0.52	+0.1
5,129,503	+		GFF5137	0.53	+0.2
5,129,662	+		GFF5137	0.79	-2.5
5,129,662	+		GFF5137	0.79	-1.7
5,129,670	-		GFF5137	0.80	-2.0
5,129,698	+		GFF5137	0.85	-0.8
5,129,744	-				+0.5
5,130,070	+				-1.0
5,130,070	+				-0.0
5,130,080	+				+0.4
5,130,085	+				-1.7
5,130,085	+				+0.2
5,130,085	+				+1.3
5,130,085	+				+1.0
5,130,085	+				-0.3
5,130,085	+				+0.3
5,130,085	+				-0.3
5,130,103	-				+1.1
5,130,107	-				+1.5
5,130,296	+		GFF5139	0.34	-1.2
5,130,323	+		GFF5139	0.38	+0.5
5,130,323	+		GFF5139	0.38	+0.2
5,130,323	+		GFF5139	0.38	-0.5
5,130,323	+		GFF5139	0.38	-2.4
5,130,323	+		GFF5139	0.38	-1.7
5,130,323	+		GFF5139	0.38	-0.3
5,130,323	+		GFF5139	0.38	+0.5
5,130,323	+		GFF5139	0.38	+0.3
5,130,323	+		GFF5139	0.38	+0.1
5,130,323	+		GFF5139	0.38	+0.1
5,130,323	+		GFF5139	0.38	-0.2
5,130,323	+		GFF5139	0.38	+0.9
5,130,323	+		GFF5139	0.38	+0.5
5,130,323	+		GFF5139	0.38	-0.2
5,130,323	+		GFF5139	0.38	-1.3
5,130,323	+		GFF5139	0.38	-0.4
5,130,323	+		GFF5139	0.38	-1.0
5,130,323	+		GFF5139	0.38	-2.8
5,130,323	+		GFF5139	0.38	-1.4
5,130,331	-		GFF5139	0.39	+0.5
5,130,331	-		GFF5139	0.39	+0.1
5,130,331	-		GFF5139	0.39	-0.1
5,130,331	-		GFF5139	0.39	-0.2
5,130,331	-		GFF5139	0.39	+0.4
5,130,331	-		GFF5139	0.39	-1.5
5,130,331	-		GFF5139	0.39	-2.2
5,130,331	-		GFF5139	0.39	-2.0
5,130,331	-		GFF5139	0.39	-3.0
5,130,331	-		GFF5139	0.39	+0.2
5,130,331	-		GFF5139	0.39	-1.9
5,130,331	-		GFF5139	0.39	+0.2
5,130,331	-		GFF5139	0.39	-0.2
5,130,331	-		GFF5139	0.39	-1.2
5,130,331	-		GFF5139	0.39	-0.3
5,130,372	-		GFF5139	0.44	-0.6
5,130,447	-		GFF5139	0.54	-0.4
5,130,456	-		GFF5139	0.56	+0.5
5,130,463	+		GFF5139	0.57	+0.5
5,130,463	+		GFF5139	0.57	-0.1
5,130,463	+		GFF5139	0.57	+0.9
5,130,463	+		GFF5139	0.57	-1.4
5,130,463	+		GFF5139	0.57	+1.4
5,130,471	-		GFF5139	0.58	-0.9
5,130,471	-		GFF5139	0.58	+0.4
5,130,471	-		GFF5139	0.58	-2.6
5,130,471	-		GFF5139	0.58	+0.9
5,130,471	-		GFF5139	0.58	-0.8
5,130,471	-		GFF5139	0.58	-0.1
5,130,471	-		GFF5139	0.58	+1.1
5,130,471	-		GFF5139	0.58	-0.2
5,130,471	-		GFF5139	0.58	-0.2
5,130,483	-		GFF5139	0.59	-0.6
5,130,490	+		GFF5139	0.60	-0.6
5,130,497	-		GFF5139	0.61	+0.0
5,130,536	-		GFF5139	0.67	+0.7
5,130,536	-		GFF5139	0.67	-0.2
5,130,547	-		GFF5139	0.68	-0.3
5,130,584	+		GFF5139	0.73	-0.6
5,130,584	-		GFF5139	0.73	+0.7
5,130,584	-		GFF5139	0.73	+0.4
5,130,599	+		GFF5139	0.75	-1.1
5,130,599	-		GFF5139	0.75	-0.3
5,130,599	-		GFF5139	0.75	-0.9
5,130,607	-		GFF5139	0.76	+0.2
5,130,639	-		GFF5139	0.81	-1.7
5,130,687	+		GFF5139	0.87	-0.1
5,130,696	+		GFF5139	0.88	-1.2
5,130,704	-		GFF5139	0.89	-0.6
5,130,706	+		GFF5139	0.90	-0.0
5,130,707	+		GFF5139	0.90	-1.5
5,130,707	+		GFF5139	0.90	+0.2
5,130,747	-				-1.7
5,130,747	-				-1.0
5,130,747	-				-0.0
5,130,800	-				-0.7
5,130,825	+				+1.5
5,130,831	-				-0.5
5,130,842	+				-0.7
5,130,842	+				+0.2
5,130,842	+				+0.4
5,130,842	+				+0.4
5,130,849	+				-0.7
5,130,849	+				-0.4
5,130,850	-				+0.4
5,130,850	-				+0.2
5,130,852	-				-0.6
5,130,857	-				-0.0
5,130,872	-				+0.4
5,130,894	+				+0.2
5,130,904	+				+1.1
5,130,904	+				-0.3
5,130,904	+				+0.2
5,130,904	+				+0.2
5,130,904	+				-0.8
5,130,905	-				-1.0
5,130,912	-				+0.4
5,130,912	-				-1.2
5,130,912	-				-0.8
5,130,920	+				-0.3
5,130,920	+				-1.4
5,130,920	+				+0.6
5,130,920	+				+0.2
5,130,925	+				-1.2
5,130,925	+				+0.1
5,130,925	+				+0.1
5,130,925	+				+0.1
5,130,925	+				-1.8
5,130,925	+				-1.0
5,130,925	+				+1.1
5,130,925	+				-1.2
5,130,925	+				-0.7
5,130,925	+				-0.6
5,130,925	+				-0.8
5,130,925	+				-0.8
5,130,933	-				+0.4
5,130,933	-				-1.0
5,130,933	-				-0.1
5,130,933	-				+0.4
5,130,938	-				-0.1
5,130,951	-				+0.4
5,130,955	-				-1.7
5,130,957	-				+0.0
5,130,962	-				+1.3
5,130,962	-				-0.1
5,130,978	-				-0.0
5,130,985	+				-0.7
5,130,988	-				-0.9
5,130,991	-				+0.2
5,130,991	-				+0.0
5,130,993	-				-0.1
5,130,993	-				-1.7