Strain Fitness in Sphingobium sp. HT1-2 around GFF5113

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,101,991	+		GFF5112	0.68	-0.4
5,101,996	+		GFF5112	0.68	-0.1
5,102,023	-		GFF5112	0.69	+0.0
5,102,024	+		GFF5112	0.69	+0.7
5,102,075	+		GFF5112	0.72	-2.1
5,102,177	+		GFF5112	0.76	+0.1
5,102,185	-		GFF5112	0.77	+0.6
5,102,217	+		GFF5112	0.78	+0.0
5,102,218	-		GFF5112	0.78	+0.5
5,102,233	-		GFF5112	0.79	+0.7
5,102,242	-		GFF5112	0.79	-0.3
5,102,242	-		GFF5112	0.79	-0.3
5,102,244	-		GFF5112	0.80	-0.4
5,102,266	+		GFF5112	0.81	-1.9
5,102,266	+		GFF5112	0.81	-0.9
5,102,272	-		GFF5112	0.81	+0.1
5,102,277	+		GFF5112	0.81	-0.1
5,102,282	+		GFF5112	0.81	-0.1
5,102,287	+		GFF5112	0.82	-1.9
5,102,299	+		GFF5112	0.82	-0.7
5,102,307	-		GFF5112	0.83	+1.5
5,102,330	+		GFF5112	0.84	-2.4
5,102,338	-		GFF5112	0.84	-0.1
5,102,338	-		GFF5112	0.84	-0.4
5,102,341	+		GFF5112	0.84	+0.1
5,102,343	-		GFF5112	0.84	-0.9
5,102,343	-		GFF5112	0.84	+0.3
5,102,369	+		GFF5112	0.85	+1.0
5,102,369	+		GFF5112	0.85	+0.3
5,102,377	-		GFF5112	0.86	-0.2
5,102,377	-		GFF5112	0.86	+0.8
5,102,377	-		GFF5112	0.86	-0.1
5,102,377	-		GFF5112	0.86	-1.5
5,102,377	-		GFF5112	0.86	+0.7
5,102,390	-		GFF5112	0.86	+1.3
5,102,396	+		GFF5112	0.87	-0.2
5,102,404	-		GFF5112	0.87	+0.4
5,102,409	-		GFF5112	0.87	+0.7
5,102,449	-		GFF5112	0.89	-0.7
5,102,459	+		GFF5112	0.90	+0.8
5,102,467	-				-0.1
5,102,467	-				+0.7
5,102,467	-				+1.0
5,102,467	-				-0.7
5,102,467	-				+1.3
5,102,480	+				+0.4
5,102,480	+				-1.0
5,102,480	+				-0.7
5,102,480	+				+0.1
5,102,480	+				+0.8
5,102,480	+				-0.2
5,102,480	+				+0.8
5,102,488	-				+0.7
5,102,488	-				+0.7
5,102,488	-				-1.8
5,102,488	-				+0.1
5,102,488	-				+0.5
5,102,488	-				+1.1
5,102,490	+				+0.4
5,102,497	-				-0.8
5,102,515	+				+0.0
5,102,523	+				-0.6
5,102,527	+				+0.0
5,102,531	+				-2.3
5,102,551	+				-1.1
5,102,551	+				-1.8
5,102,559	-				-0.3
5,102,559	-				-0.2
5,102,559	-				-1.0
5,102,559	-				+1.2
5,102,559	-				-0.5
5,102,571	+				-0.5
5,102,575	-				-1.9
5,102,609	+				+1.0
5,102,614	+				-0.9
5,102,658	+				-1.1
5,102,661	-				-0.2
5,102,669	-				-0.6
5,102,674	-				-0.6
5,102,674	-				-0.8
5,102,687	-				-0.3
5,102,689	-				+0.6
5,102,726	+				+1.2
5,102,729	-				-0.6
5,102,734	-				+0.4
5,102,752	+				-0.3
5,102,770	+				-0.6
5,102,781	+				-0.6
5,102,781	+				+0.3
5,102,789	-				-0.1
5,102,789	-				-0.6
5,102,789	-				-1.7
5,102,806	+				-1.7
5,102,812	+				-1.8
5,102,814	-				+0.2
5,102,814	-				-2.3
5,102,826	+				-0.5
5,102,826	+				-0.3
5,102,826	+				-0.1
5,102,834	-				+0.1
5,102,835	+				-2.1
5,102,875	+				-1.1
5,102,883	-				-0.9
5,102,899	+				-1.3
5,102,973	+				-1.0
5,102,984	+				+0.4
5,102,984	+				+0.2
5,102,987	-				-0.5
5,102,999	+		GFF5113	0.11	-1.1
5,103,004	+		GFF5113	0.15	+0.1
5,103,040	-		GFF5113	0.46	-0.2
5,103,044	+		GFF5113	0.50	-0.5
5,103,045	-		GFF5113	0.51	-0.4
5,103,062	-		GFF5113	0.66	-0.5
5,103,127	+				+0.7
5,103,183	+				-0.2
5,103,187	-				-1.0
5,103,191	-				-0.2
5,103,212	-				-0.3
5,103,220	-				-1.4
5,103,226	+				+0.0
5,103,226	+				+0.2
5,103,234	-				+0.5
5,103,234	-				+0.3
5,103,234	-				+1.0
5,103,234	-				-2.0
5,103,234	-				+0.2
5,103,251	-				-0.6
5,103,293	+				+0.3
5,103,293	+				+1.0
5,103,293	+				+0.9
5,103,293	+				+0.5
5,103,293	+				+0.1
5,103,293	+				-1.1
5,103,293	+				+1.6
5,103,293	+				-0.4
5,103,296	-				-0.3
5,103,301	-				-1.3
5,103,301	-				-0.4
5,103,301	-				+0.9
5,103,301	-				+0.1
5,103,301	-				-0.9
5,103,301	-				+0.5
5,103,322	-				-0.4
5,103,364	-				+0.1
5,103,390	-				-2.4
5,103,397	-				+1.1
5,103,507	-				-0.1
5,103,535	+				+0.6
5,103,544	-				+0.4
5,103,548	-				+1.3
5,103,574	+				-0.6
5,103,577	+				-2.1
5,103,582	-				-2.0
5,103,607	+				-0.8
5,103,607	+				-2.3
5,103,610	-				+0.4
5,103,615	-				+0.4
5,103,615	-				+0.3
5,103,616	+				-1.9
5,103,624	-				-2.5
5,103,628	+				-1.5
5,103,628	+				+0.4
5,103,631	-				-0.4
5,103,631	-				+0.9
5,103,636	-				+0.2
5,103,636	-				+1.2
5,103,636	-				+0.3
5,103,636	-				+0.0
5,103,636	-				-0.8
5,103,636	-				-0.2
5,103,636	-				-1.6
5,103,636	-				-0.5
5,103,677	+				-0.9
5,103,692	+				-1.1
5,103,692	+				-1.9
5,103,695	-				+0.0
5,103,695	-				+0.0
5,103,700	+				-1.8
5,103,700	+				+0.6
5,103,700	-				+0.8
5,103,700	-				-2.2
5,103,715	+		GFF5114	0.12	-1.7
5,103,719	+		GFF5114	0.13	+0.8
5,103,719	+		GFF5114	0.13	-0.3
5,103,719	+		GFF5114	0.13	-1.2
5,103,719	+		GFF5114	0.13	+1.0
5,103,727	-		GFF5114	0.14	+0.7
5,103,727	-		GFF5114	0.14	+0.4
5,103,727	-		GFF5114	0.14	-0.3
5,103,727	-		GFF5114	0.14	-0.2
5,103,727	-		GFF5114	0.14	+0.2
5,103,735	-		GFF5114	0.16	+0.2
5,103,735	-		GFF5114	0.16	+0.3
5,103,737	+		GFF5114	0.16	-0.2
5,103,740	-		GFF5114	0.17	+1.2
5,103,761	+		GFF5114	0.20	-2.3
5,103,761	+		GFF5114	0.20	-2.1
5,103,769	-		GFF5114	0.22	+0.9
5,103,769	-		GFF5114	0.22	-0.6
5,103,769	-		GFF5114	0.22	-0.9
5,103,769	-		GFF5114	0.22	-1.8
5,103,784	+		GFF5114	0.25	+0.8
5,103,793	+		GFF5114	0.26	+0.4
5,103,795	-		GFF5114	0.26	-1.1
5,103,796	-		GFF5114	0.27	+0.2
5,103,801	-		GFF5114	0.28	-2.1
5,103,806	+		GFF5114	0.28	-0.5
5,103,852	+		GFF5114	0.37	-1.5
5,103,852	+		GFF5114	0.37	-0.9
5,103,866	-		GFF5114	0.39	-1.5
5,103,867	+		GFF5114	0.39	+0.8
5,103,867	+		GFF5114	0.39	-1.6
5,103,867	+		GFF5114	0.39	-0.0
5,103,867	+		GFF5114	0.39	+0.0
5,103,875	-		GFF5114	0.41	+0.9
5,103,875	-		GFF5114	0.41	-0.2
5,103,875	-		GFF5114	0.41	+0.7
5,103,889	+		GFF5114	0.43	-0.1
5,103,896	+		GFF5114	0.45	-0.5
5,103,921	-		GFF5114	0.49	-1.2
5,103,931	-		GFF5114	0.51	-1.0
5,103,933	-		GFF5114	0.51	-0.2
5,103,947	+		GFF5114	0.54	+0.1
5,103,953	-		GFF5114	0.55	+0.1
5,103,957	+		GFF5114	0.56	-0.6
5,103,962	+		GFF5114	0.57	+0.8
5,103,962	+		GFF5114	0.57	-0.1
5,103,965	-		GFF5114	0.57	-0.1
5,103,965	-		GFF5114	0.57	+0.4
5,103,965	-		GFF5114	0.57	-1.0
5,103,970	-		GFF5114	0.58	-2.2
5,103,970	-		GFF5114	0.58	-1.0
5,103,970	-		GFF5114	0.58	+1.0
5,103,981	+		GFF5114	0.60	-1.0
5,104,002	+		GFF5114	0.64	-0.1
5,104,002	+		GFF5114	0.64	+0.6
5,104,002	+		GFF5114	0.64	+0.3
5,104,004	+		GFF5114	0.64	+1.0
5,104,005	-		GFF5114	0.64	+0.5
5,104,010	-		GFF5114	0.65	+0.0
5,104,010	-		GFF5114	0.65	-0.9
5,104,010	-		GFF5114	0.65	+0.3
5,104,014	+		GFF5114	0.66	+0.8
5,104,037	-		GFF5114	0.70	-0.2
5,104,059	-		GFF5114	0.74	+0.3