Strain Fitness in Sphingobium sp. HT1-2 around GFF5047

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,043,138	+		GFF5045	0.67	+0.5
5,043,156	-		GFF5045	0.69	-0.5
5,043,169	+		GFF5045	0.69	-2.7
5,043,169	+		GFF5045	0.69	+0.3
5,043,169	+		GFF5045	0.69	-0.2
5,043,174	+		GFF5045	0.70	-0.4
5,043,175	+		GFF5045	0.70	+1.0
5,043,177	-		GFF5045	0.70	+1.1
5,043,177	-		GFF5045	0.70	+0.2
5,043,177	-		GFF5045	0.70	+1.1
5,043,179	+		GFF5045	0.70	-0.2
5,043,179	+		GFF5045	0.70	-1.1
5,043,182	-		GFF5045	0.70	-1.0
5,043,183	-		GFF5045	0.70	-2.5
5,043,187	-		GFF5045	0.71	-0.1
5,043,187	-		GFF5045	0.71	+0.5
5,043,189	+		GFF5045	0.71	-2.0
5,043,189	+		GFF5045	0.71	+1.1
5,043,189	+		GFF5045	0.71	+0.6
5,043,197	-		GFF5045	0.71	+0.4
5,043,219	-		GFF5045	0.73	+0.6
5,043,223	-		GFF5045	0.73	-1.0
5,043,233	-		GFF5045	0.74	-1.7
5,043,280	+		GFF5045	0.77	-0.7
5,043,282	+		GFF5045	0.77	-2.2
5,043,285	-		GFF5045	0.77	-1.5
5,043,288	-		GFF5045	0.78	+0.9
5,043,288	-		GFF5045	0.78	-0.0
5,043,366	-		GFF5045	0.83	-0.5
5,043,373	-		GFF5045	0.84	-2.0
5,043,410	-		GFF5045	0.86	+0.0
5,043,411	-		GFF5045	0.86	+1.0
5,043,411	-		GFF5045	0.86	-0.8
5,043,416	-		GFF5045	0.87	-0.7
5,043,421	+		GFF5045	0.87	-1.2
5,043,421	-		GFF5045	0.87	-1.0
5,043,423	+		GFF5045	0.87	+0.5
5,043,429	-		GFF5045	0.87	-1.1
5,043,469	+				+0.0
5,043,469	+				-2.2
5,043,477	-				-0.7
5,043,484	-				+0.3
5,043,492	+				-1.7
5,043,493	-				-1.3
5,043,493	-				-0.6
5,043,497	+				+0.4
5,043,500	-				-1.1
5,043,542	+				-0.1
5,043,551	+				-0.7
5,043,570	+				-2.4
5,043,572	+				-0.3
5,043,572	+				-1.3
5,043,572	+				-1.5
5,043,572	+				-2.0
5,043,572	+				-0.2
5,043,578	-				-0.9
5,043,578	-				-1.2
5,043,578	-				+0.1
5,043,578	-				+0.9
5,043,580	-				-2.3
5,043,580	-				-2.2
5,043,580	-				-1.9
5,043,598	-				-0.7
5,043,605	-				+1.0
5,043,605	-				-1.5
5,043,613	-				+0.0
5,043,613	-				-0.3
5,043,614	-				-0.2
5,043,630	-				+1.2
5,043,642	-				-1.5
5,043,643	+				+0.3
5,043,645	-				-1.0
5,043,647	-				-0.3
5,043,666	-				-0.4
5,043,709	-		GFF5046	0.15	-2.1
5,043,720	+		GFF5046	0.17	-0.1
5,043,738	-		GFF5046	0.21	-0.2
5,043,745	-		GFF5046	0.23	-1.7
5,043,774	+		GFF5046	0.29	-0.6
5,043,782	-		GFF5046	0.30	-1.8
5,043,789	+		GFF5046	0.32	-1.2
5,043,792	-		GFF5046	0.32	-0.1
5,043,792	-		GFF5046	0.32	-0.1
5,043,799	+		GFF5046	0.34	-2.1
5,043,799	+		GFF5046	0.34	-1.2
5,043,799	+		GFF5046	0.34	+0.3
5,043,799	+		GFF5046	0.34	+0.7
5,043,799	+		GFF5046	0.34	-1.9
5,043,799	+		GFF5046	0.34	+0.5
5,043,799	+		GFF5046	0.34	-0.6
5,043,799	+		GFF5046	0.34	-0.7
5,043,799	+		GFF5046	0.34	-0.4
5,043,805	+		GFF5046	0.35	-0.2
5,043,807	-		GFF5046	0.35	+0.0
5,043,807	-		GFF5046	0.35	-1.5
5,043,807	-		GFF5046	0.35	-0.5
5,043,807	-		GFF5046	0.35	-0.2
5,043,807	-		GFF5046	0.35	+0.1
5,043,807	-		GFF5046	0.35	-0.1
5,043,807	-		GFF5046	0.35	-0.3
5,043,810	+		GFF5046	0.36	-0.3
5,043,810	+		GFF5046	0.36	-0.7
5,043,810	+		GFF5046	0.36	-1.3
5,043,818	-		GFF5046	0.38	-1.1
5,043,818	-		GFF5046	0.38	-0.6
5,043,818	-		GFF5046	0.38	-1.6
5,043,818	-		GFF5046	0.38	-0.6
5,043,818	-		GFF5046	0.38	-1.1
5,043,818	-		GFF5046	0.38	-0.4
5,043,818	-		GFF5046	0.38	+0.7
5,043,818	-		GFF5046	0.38	-0.8
5,043,818	-		GFF5046	0.38	-1.9
5,043,837	+		GFF5046	0.42	+0.2
5,043,845	-		GFF5046	0.43	-0.2
5,043,861	-		GFF5046	0.47	+0.2
5,043,863	+		GFF5046	0.47	-1.1
5,043,874	+		GFF5046	0.49	+0.6
5,043,877	-		GFF5046	0.50	+0.2
5,043,911	-		GFF5046	0.57	+0.2
5,043,956	+		GFF5046	0.66	-1.2
5,043,966	-		GFF5046	0.68	-1.1
5,043,971	-		GFF5046	0.69	+0.1
5,043,983	+		GFF5046	0.72	-2.2
5,043,986	+		GFF5046	0.72	+0.2
5,043,986	+		GFF5046	0.72	-2.0
5,043,986	+		GFF5046	0.72	+0.1
5,043,986	+		GFF5046	0.72	-0.3
5,043,986	+		GFF5046	0.72	+1.1
5,043,986	+		GFF5046	0.72	+0.2
5,043,986	+		GFF5046	0.72	+0.9
5,043,986	+		GFF5046	0.72	-1.6
5,043,986	+		GFF5046	0.72	-0.1
5,043,986	+		GFF5046	0.72	-1.6
5,043,986	+		GFF5046	0.72	-0.1
5,043,989	-		GFF5046	0.73	-0.7
5,043,989	-		GFF5046	0.73	+0.0
5,043,994	-		GFF5046	0.74	-0.6
5,043,994	-		GFF5046	0.74	-1.2
5,043,994	-		GFF5046	0.74	-1.2
5,043,994	-		GFF5046	0.74	+0.3
5,043,994	-		GFF5046	0.74	-1.6
5,043,994	-		GFF5046	0.74	-0.3
5,043,994	-		GFF5046	0.74	-2.1
5,043,994	-		GFF5046	0.74	+0.5
5,043,994	-		GFF5046	0.74	-0.1
5,043,994	-		GFF5046	0.74	-1.1
5,043,994	-		GFF5046	0.74	+0.8
5,043,994	-		GFF5046	0.74	-0.2
5,043,994	-		GFF5046	0.74	-2.4
5,043,994	-		GFF5046	0.74	-1.0
5,043,994	-		GFF5046	0.74	-0.6
5,043,994	-		GFF5046	0.74	+0.3
5,043,994	-		GFF5046	0.74	+0.8
5,043,994	-		GFF5046	0.74	-0.7
5,043,994	-		GFF5046	0.74	-1.6
5,044,009	-		GFF5046	0.77	-2.7
5,044,011	-		GFF5046	0.78	+0.1
5,044,011	-		GFF5046	0.78	+0.7
5,044,020	+		GFF5046	0.80	+0.7
5,044,020	+		GFF5046	0.80	-2.0
5,044,020	+		GFF5046	0.80	-0.8
5,044,025	-		GFF5046	0.81	-1.1
5,044,028	-		GFF5046	0.81	+0.3
5,044,028	-		GFF5046	0.81	-2.0
5,044,028	-		GFF5046	0.81	+0.0
5,044,030	+		GFF5046	0.82	+0.6
5,044,030	+		GFF5046	0.82	-3.0
5,044,030	+		GFF5046	0.82	-1.5
5,044,030	+		GFF5046	0.82	-2.0
5,044,030	+		GFF5046	0.82	+0.2
5,044,030	+		GFF5046	0.82	-1.9
5,044,038	-		GFF5046	0.83	-0.8
5,044,038	-		GFF5046	0.83	+0.6
5,044,038	-		GFF5046	0.83	-0.3
5,044,038	-		GFF5046	0.83	-1.1
5,044,038	-		GFF5046	0.83	-1.4
5,044,058	+		GFF5046	0.87	-0.5
5,044,058	+		GFF5046	0.87	-1.7
5,044,095	-				-0.8
5,044,096	-				-0.5
5,044,097	+				-0.5
5,044,099	+				-1.1
5,044,099	+				+0.8
5,044,105	-				-1.6
5,044,107	-				-0.9
5,044,107	-				-0.3
5,044,135	+				-0.2
5,044,139	-				+0.2
5,044,150	-				-0.7
5,044,168	-				-2.2
5,044,205	-				+0.7
5,044,211	-				+1.5
5,044,246	-				-2.0
5,044,253	+				+1.3
5,044,253	+				+0.4
5,044,253	+				-1.2
5,044,261	-				+0.9
5,044,270	-				-0.6
5,044,273	-				-2.2
5,044,275	+				-0.7
5,044,281	+		GFF5047	0.10	+0.6
5,044,289	-		GFF5047	0.11	+0.3
5,044,289	-		GFF5047	0.11	-1.7
5,044,301	+		GFF5047	0.11	-0.1
5,044,306	+		GFF5047	0.12	-0.7
5,044,306	+		GFF5047	0.12	-1.7
5,044,306	+		GFF5047	0.12	-0.1
5,044,306	+		GFF5047	0.12	-2.3
5,044,306	+		GFF5047	0.12	-1.4
5,044,307	-		GFF5047	0.12	-2.3
5,044,314	-		GFF5047	0.12	-1.4
5,044,314	-		GFF5047	0.12	-0.4
5,044,314	-		GFF5047	0.12	-1.9
5,044,314	-		GFF5047	0.12	+1.1
5,044,337	+		GFF5047	0.14	+0.2
5,044,366	-		GFF5047	0.15	-0.1
5,044,366	-		GFF5047	0.15	-1.1
5,044,369	-		GFF5047	0.16	-1.4
5,044,386	-		GFF5047	0.17	-0.2
5,044,388	-		GFF5047	0.17	-0.8
5,044,408	-		GFF5047	0.18	-2.3
5,044,408	-		GFF5047	0.18	-1.0
5,044,432	+		GFF5047	0.20	-1.8
5,044,457	-		GFF5047	0.21	+0.1
5,044,491	-		GFF5047	0.23	-0.1
5,044,494	+		GFF5047	0.23	-0.7
5,044,494	+		GFF5047	0.23	+0.5
5,044,496	-		GFF5047	0.24	-0.7
5,044,502	-		GFF5047	0.24	+1.0
5,044,504	+		GFF5047	0.24	-0.7
5,044,514	+		GFF5047	0.25	-1.5
5,044,514	+		GFF5047	0.25	-0.6
5,044,514	+		GFF5047	0.25	-1.1
5,044,522	-		GFF5047	0.25	-1.7
5,044,522	-		GFF5047	0.25	-0.1
5,044,540	-		GFF5047	0.26	-0.5
5,044,540	-		GFF5047	0.26	-0.2
5,044,565	+		GFF5047	0.28	+1.4
5,044,565	-		GFF5047	0.28	-0.6
5,044,571	+		GFF5047	0.28	-3.3
5,044,573	-		GFF5047	0.28	-1.2
5,044,576	+		GFF5047	0.29	+0.9
5,044,579	-		GFF5047	0.29	-0.2
5,044,588	+		GFF5047	0.29	+0.4
5,044,588	+		GFF5047	0.29	-1.0
5,044,588	+		GFF5047	0.29	-0.7
5,044,588	+		GFF5047	0.29	-1.6
5,044,589	-		GFF5047	0.29	+0.3
5,044,591	-		GFF5047	0.30	-2.1
5,044,596	-		GFF5047	0.30	+0.9
5,044,596	-		GFF5047	0.30	+0.5
5,044,596	-		GFF5047	0.30	-1.1
5,044,601	-		GFF5047	0.30	+0.2
5,044,632	-		GFF5047	0.32	+2.4
5,044,632	-		GFF5047	0.32	-3.0
5,044,637	+		GFF5047	0.32	-0.1
5,044,637	+		GFF5047	0.32	+0.1
5,044,637	-		GFF5047	0.32	-1.9
5,044,645	-		GFF5047	0.33	-1.0
5,044,655	-		GFF5047	0.34	+0.0
5,044,656	-		GFF5047	0.34	+0.1
5,044,658	+		GFF5047	0.34	+0.4
5,044,658	+		GFF5047	0.34	+0.9
5,044,658	+		GFF5047	0.34	-1.3
5,044,658	+		GFF5047	0.34	+0.1
5,044,658	+		GFF5047	0.34	-0.5
5,044,658	+		GFF5047	0.34	+0.6
5,044,666	-		GFF5047	0.34	+1.1
5,044,666	-		GFF5047	0.34	+0.4
5,044,666	-		GFF5047	0.34	-1.0
5,044,666	-		GFF5047	0.34	-2.2
5,044,679	+		GFF5047	0.35	-0.5
5,044,687	-		GFF5047	0.36	-0.1
5,044,739	-		GFF5047	0.39	+0.7
5,044,739	-		GFF5047	0.39	-1.5
5,044,739	-		GFF5047	0.39	-0.2
5,044,739	-		GFF5047	0.39	-0.5
5,044,739	-		GFF5047	0.39	-0.7
5,044,739	-		GFF5047	0.39	-0.4
5,044,739	-		GFF5047	0.39	-0.2
5,044,762	-		GFF5047	0.40	-1.6
5,044,779	+		GFF5047	0.41	-1.2
5,044,779	+		GFF5047	0.41	-0.6
5,044,779	+		GFF5047	0.41	+0.4
5,044,779	+		GFF5047	0.41	-0.4
5,044,787	-		GFF5047	0.42	+0.0
5,044,787	-		GFF5047	0.42	-0.6
5,044,787	-		GFF5047	0.42	+1.4
5,044,787	-		GFF5047	0.42	-1.9
5,044,808	-		GFF5047	0.43	-0.6
5,044,815	-		GFF5047	0.44	-1.9
5,044,815	-		GFF5047	0.44	+0.1
5,044,815	-		GFF5047	0.44	-0.2
5,044,819	+		GFF5047	0.44	+0.8
5,044,821	+		GFF5047	0.44	-0.4
5,044,821	+		GFF5047	0.44	-1.0
5,044,821	+		GFF5047	0.44	+0.0
5,044,827	-		GFF5047	0.44	-0.7
5,044,829	-		GFF5047	0.44	+0.2
5,044,856	+		GFF5047	0.46	+1.0
5,044,856	+		GFF5047	0.46	+1.1
5,044,856	+		GFF5047	0.46	-0.3
5,044,856	+		GFF5047	0.46	-1.1
5,044,856	+		GFF5047	0.46	+1.1
5,044,864	-		GFF5047	0.47	+0.4
5,044,864	-		GFF5047	0.47	-0.1
5,044,869	+		GFF5047	0.47	-0.6
5,044,869	+		GFF5047	0.47	-0.7
5,044,869	+		GFF5047	0.47	+0.2
5,044,869	+		GFF5047	0.47	-1.2
5,044,869	+		GFF5047	0.47	+0.8
5,044,869	+		GFF5047	0.47	-0.6
5,044,869	-		GFF5047	0.47	-0.2
5,044,877	-		GFF5047	0.47	+0.5
5,044,877	-		GFF5047	0.47	+1.0
5,044,877	-		GFF5047	0.47	-1.8
5,044,877	-		GFF5047	0.47	+0.5
5,044,877	-		GFF5047	0.47	-1.5
5,044,907	+		GFF5047	0.49	-0.5
5,044,907	+		GFF5047	0.49	-0.7
5,044,917	-		GFF5047	0.50	-0.6
5,044,931	-		GFF5047	0.51	-0.4
5,044,946	+		GFF5047	0.52	-0.4
5,044,946	+		GFF5047	0.52	-2.0
5,044,948	+		GFF5047	0.52	-1.8
5,044,948	+		GFF5047	0.52	+0.3
5,044,950	+		GFF5047	0.52	-0.7
5,044,956	-		GFF5047	0.52	-2.3
5,044,956	-		GFF5047	0.52	+0.1
5,044,963	-		GFF5047	0.53	-0.4
5,044,967	+		GFF5047	0.53	+0.1
5,044,968	-		GFF5047	0.53	+0.9
5,044,980	-		GFF5047	0.54	-1.7
5,044,985	+		GFF5047	0.54	+0.2
5,044,985	-		GFF5047	0.54	-2.6
5,044,999	+		GFF5047	0.55	-1.5
5,045,012	-		GFF5047	0.56	-1.1
5,045,013	+		GFF5047	0.56	-0.9
5,045,018	+		GFF5047	0.56	-0.7
5,045,021	-		GFF5047	0.56	-1.8
5,045,021	-		GFF5047	0.56	-0.1
5,045,021	-		GFF5047	0.56	+0.9
5,045,023	+		GFF5047	0.57	-0.8
5,045,028	+		GFF5047	0.57	+0.1
5,045,031	-		GFF5047	0.57	+0.7
5,045,050	+		GFF5047	0.58	-0.4
5,045,057	+		GFF5047	0.59	-1.1
5,045,063	+		GFF5047	0.59	-1.9
5,045,063	+		GFF5047	0.59	-0.5
5,045,063	+		GFF5047	0.59	-0.8
5,045,063	+		GFF5047	0.59	-1.5
5,045,071	-		GFF5047	0.60	-1.3
5,045,071	-		GFF5047	0.60	-1.5
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