Strain Fitness in Sphingobium sp. HT1-2 around GFF5025

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,015,957	+		GFF5023	0.77	+1.3
5,015,970	-		GFF5023	0.77	-0.6
5,015,970	-		GFF5023	0.77	-1.1
5,015,970	-		GFF5023	0.77	-0.6
5,015,975	+		GFF5023	0.78	-0.2
5,015,983	-		GFF5023	0.78	-0.9
5,015,994	+		GFF5023	0.79	+1.0
5,015,994	+		GFF5023	0.79	-0.1
5,016,031	+		GFF5023	0.81	-0.0
5,016,049	-		GFF5023	0.82	+0.9
5,016,059	-		GFF5023	0.83	+0.1
5,016,064	+		GFF5023	0.83	-0.1
5,016,069	-		GFF5023	0.84	+0.1
5,016,085	+		GFF5023	0.85	+0.4
5,016,099	-		GFF5023	0.85	-1.7
5,016,115	+		GFF5023	0.86	+0.1
5,016,115	+		GFF5023	0.86	+0.8
5,016,123	-		GFF5023	0.87	-0.6
5,016,123	-		GFF5023	0.87	+0.2
5,016,150	-		GFF5023	0.88	+0.7
5,016,167	+		GFF5023	0.90	-0.7
5,016,167	+		GFF5023	0.90	-0.4
5,016,175	-				+1.1
5,016,177	+				+0.6
5,016,182	+				+0.3
5,016,205	+				+0.1
5,016,210	+				+0.9
5,016,210	+				-0.2
5,016,255	+				-0.5
5,016,263	-				-0.9
5,016,275	+				-1.1
5,016,277	+				+1.9
5,016,283	+				-0.0
5,016,285	+				+0.4
5,016,292	+				+1.0
5,016,292	+				-0.7
5,016,293	-				-0.8
5,016,300	-				+0.7
5,016,302	-				+0.6
5,016,309	-				+1.2
5,016,345	+				+0.8
5,016,345	+				-0.1
5,016,353	-				+0.1
5,016,375	+				-0.0
5,016,377	+				+0.9
5,016,406	+				+0.7
5,016,459	+		GFF5024	0.35	-0.7
5,016,461	+		GFF5024	0.37	-0.2
5,016,461	+		GFF5024	0.37	+0.4
5,016,467	-		GFF5024	0.40	+0.2
5,016,467	-		GFF5024	0.40	+1.3
5,016,516	-		GFF5024	0.66	-0.2
5,016,521	+		GFF5024	0.69	+0.5
5,016,522	-		GFF5024	0.69	-0.1
5,016,527	+		GFF5024	0.72	-1.4
5,016,535	-		GFF5024	0.76	+1.1
5,016,535	-		GFF5024	0.76	+0.1
5,016,549	+		GFF5024	0.84	+0.6
5,016,552	-		GFF5024	0.85	-1.6
5,016,552	-		GFF5024	0.85	+0.7
5,016,553	+		GFF5024	0.86	+1.0
5,016,553	+		GFF5024	0.86	-1.3
5,016,557	-		GFF5024	0.88	+0.6
5,016,566	-				+0.5
5,016,581	-				+1.1
5,016,654	+				+0.6
5,016,659	+				-0.3
5,016,662	-				-1.5
5,016,664	+				-0.7
5,016,667	-				+0.3
5,016,667	-				-1.5
5,016,669	+				-1.6
5,016,686	+				+0.1
5,016,686	+				-0.5
5,016,694	-				+1.1
5,016,694	-				-0.1
5,016,703	+				+0.0
5,016,708	+				+0.5
5,016,716	-				-0.0
5,016,716	-				+0.3
5,016,719	+				-1.5
5,016,721	-				-0.1
5,016,726	-				-1.5
5,016,772	+				-0.6
5,016,772	+				+0.2
5,016,772	+				+0.1
5,016,780	-				-0.1
5,016,831	-				+0.1
5,016,845	+				-0.4
5,016,845	+				-0.0
5,016,853	-				+0.7
5,016,853	-				-1.4
5,016,888	+				-1.8
5,016,888	+				+0.6
5,016,888	+				+0.6
5,016,896	-				+0.4
5,016,904	-				+0.7
5,016,923	+				-0.0
5,016,923	+				-0.2
5,016,947	+				+0.1
5,016,953	+				+1.6
5,016,953	-				+0.1
5,016,955	-				+0.8
5,016,963	+				-0.1
5,016,963	+				+0.8
5,016,966	-				+0.9
5,016,966	-				-2.2
5,016,971	-		GFF5025	0.11	-0.8
5,016,971	-		GFF5025	0.11	-0.7
5,016,971	-		GFF5025	0.11	-0.1
5,017,000	-		GFF5025	0.22	+0.3
5,017,004	-		GFF5025	0.23	+0.8
5,017,014	-		GFF5025	0.26	-0.4
5,017,059	+		GFF5025	0.42	+1.5
5,017,072	-		GFF5025	0.47	-0.6
5,017,075	+		GFF5025	0.48	+0.7
5,017,075	+		GFF5025	0.48	+0.7
5,017,083	-		GFF5025	0.50	-1.6
5,017,095	+		GFF5025	0.55	+1.0
5,017,095	+		GFF5025	0.55	-0.0
5,017,107	+		GFF5025	0.59	-0.5
5,017,128	+		GFF5025	0.66	+1.5
5,017,136	-		GFF5025	0.69	+0.5
5,017,136	-		GFF5025	0.69	+0.9
5,017,136	-		GFF5025	0.69	-1.0
5,017,144	+		GFF5025	0.72	+0.3
5,017,146	-		GFF5025	0.72	+0.4
5,017,187	+		GFF5025	0.86	+0.5
5,017,206	+				-0.6
5,017,206	+				-1.5
5,017,206	+				+0.3
5,017,212	+				-0.6
5,017,212	+				-1.7
5,017,214	-				-0.6
5,017,214	-				+0.5
5,017,220	-				-1.8
5,017,220	-				+0.7
5,017,220	-				+1.0
5,017,227	+				+1.5
5,017,236	+				-0.6
5,017,254	-				-0.0
5,017,275	+				+0.9
5,017,275	+				+0.3
5,017,430	+				+0.7
5,017,430	+				+0.3
5,017,433	-				-0.0
5,017,438	-				+0.1
5,017,438	-				-0.4
5,017,438	-				-0.7
5,017,438	-				+1.5
5,017,550	+				+0.1
5,017,563	-		GFF5026	0.10	-0.9
5,017,618	-		GFF5026	0.14	+0.2
5,017,621	+		GFF5026	0.14	+0.5
5,017,629	-		GFF5026	0.15	-0.5
5,017,669	+		GFF5026	0.17	-0.1
5,017,669	+		GFF5026	0.17	-0.4
5,017,674	+		GFF5026	0.17	-0.0
5,017,677	-		GFF5026	0.18	-0.6
5,017,677	-		GFF5026	0.18	+0.5
5,017,677	-		GFF5026	0.18	+0.8
5,017,677	-		GFF5026	0.18	-0.7
5,017,677	-		GFF5026	0.18	+0.7
5,017,679	+		GFF5026	0.18	-0.8
5,017,687	-		GFF5026	0.18	+0.7
5,017,687	-		GFF5026	0.18	-1.9
5,017,687	-		GFF5026	0.18	+1.2
5,017,687	-		GFF5026	0.18	-0.2
5,017,689	+		GFF5026	0.18	-1.3
5,017,692	-		GFF5026	0.18	+1.3
5,017,694	+		GFF5026	0.19	+0.1
5,017,739	-		GFF5026	0.21	-1.1
5,017,758	-		GFF5026	0.23	+0.2
5,017,764	-		GFF5026	0.23	-0.2
5,017,826	+		GFF5026	0.27	-1.1
5,017,831	+		GFF5026	0.27	+0.3
5,017,834	-		GFF5026	0.27	+0.3
5,017,839	-		GFF5026	0.28	+1.0
5,017,839	-		GFF5026	0.28	+0.1
5,017,839	-		GFF5026	0.28	-0.6
5,017,839	-		GFF5026	0.28	-0.1
5,017,846	-		GFF5026	0.28	+0.5
5,017,846	-		GFF5026	0.28	+2.0
5,017,860	+		GFF5026	0.29	+0.9
5,017,860	+		GFF5026	0.29	-1.9
5,017,868	-		GFF5026	0.29	+1.3
5,017,875	+		GFF5026	0.30	+0.3
5,017,875	+		GFF5026	0.30	-1.9
5,017,878	-		GFF5026	0.30	+0.2
5,017,883	-		GFF5026	0.30	+0.9
5,017,883	-		GFF5026	0.30	-1.0
5,017,900	+		GFF5026	0.31	-0.7
5,017,940	+		GFF5026	0.34	+1.0
5,017,943	+		GFF5026	0.34	+1.6
5,017,943	+		GFF5026	0.34	-1.6
5,017,943	+		GFF5026	0.34	+1.5
5,017,946	-		GFF5026	0.34	-0.1
5,017,946	-		GFF5026	0.34	+0.9
5,017,984	+		GFF5026	0.37	+0.4
5,017,989	+		GFF5026	0.37	-0.0
5,017,992	-		GFF5026	0.37	+0.6
5,018,016	-		GFF5026	0.39	-0.2
5,018,037	+		GFF5026	0.40	+0.2
5,018,044	-		GFF5026	0.40	+0.4
5,018,047	+		GFF5026	0.41	-0.2
5,018,069	+		GFF5026	0.42	+0.1
5,018,093	+		GFF5026	0.43	-1.9
5,018,123	+		GFF5026	0.45	+0.4
5,018,144	-		GFF5026	0.47	+0.2
5,018,145	+		GFF5026	0.47	+0.7
5,018,148	-		GFF5026	0.47	-0.5
5,018,150	+		GFF5026	0.47	-0.3
5,018,150	+		GFF5026	0.47	+0.7
5,018,150	+		GFF5026	0.47	+0.3
5,018,154	-		GFF5026	0.47	-0.0
5,018,154	-		GFF5026	0.47	-0.8
5,018,156	+		GFF5026	0.47	-0.0
5,018,158	-		GFF5026	0.47	+0.6
5,018,158	-		GFF5026	0.47	-0.1
5,018,158	-		GFF5026	0.47	+0.9
5,018,158	-		GFF5026	0.47	-0.4
5,018,164	-		GFF5026	0.48	+0.9
5,018,164	-		GFF5026	0.48	-0.7
5,018,164	-		GFF5026	0.48	+0.1
5,018,187	+		GFF5026	0.49	-0.8
5,018,193	-		GFF5026	0.50	-0.0
5,018,223	+		GFF5026	0.51	-1.7
5,018,223	+		GFF5026	0.51	-1.6