Strain Fitness in Sphingobium sp. HT1-2 around GFF5015

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,008,413	+				+0.3
5,008,443	+				+0.2
5,008,444	+				+1.1
5,008,451	+				-0.0
5,008,490	+				-0.6
5,008,506	-		GFF5014	0.11	-1.0
5,008,524	+		GFF5014	0.13	+1.1
5,008,526	+		GFF5014	0.13	+0.9
5,008,526	+		GFF5014	0.13	-0.0
5,008,534	-		GFF5014	0.14	-0.1
5,008,534	-		GFF5014	0.14	-0.5
5,008,534	-		GFF5014	0.14	+0.4
5,008,555	-		GFF5014	0.17	+0.4
5,008,577	+		GFF5014	0.19	-0.1
5,008,577	+		GFF5014	0.19	+0.5
5,008,585	-		GFF5014	0.20	+0.5
5,008,610	-		GFF5014	0.23	-0.4
5,008,610	-		GFF5014	0.23	-0.3
5,008,618	+		GFF5014	0.24	-1.2
5,008,618	-		GFF5014	0.24	+0.7
5,008,626	+		GFF5014	0.25	-1.5
5,008,634	-		GFF5014	0.26	+1.0
5,008,634	-		GFF5014	0.26	+0.6
5,008,660	+		GFF5014	0.29	-2.3
5,008,663	-		GFF5014	0.29	+0.6
5,008,663	-		GFF5014	0.29	+0.4
5,008,679	+		GFF5014	0.31	-0.5
5,008,686	+		GFF5014	0.32	-0.6
5,008,689	-		GFF5014	0.32	+0.8
5,008,694	-		GFF5014	0.33	+0.5
5,008,712	+		GFF5014	0.35	-0.6
5,008,712	+		GFF5014	0.35	-0.5
5,008,712	+		GFF5014	0.35	+1.4
5,008,729	+		GFF5014	0.37	+1.1
5,008,729	+		GFF5014	0.37	+0.5
5,008,729	+		GFF5014	0.37	-0.7
5,008,729	+		GFF5014	0.37	+0.2
5,008,737	-		GFF5014	0.38	+0.6
5,008,774	+		GFF5014	0.42	+0.6
5,008,782	-		GFF5014	0.43	-0.0
5,008,782	-		GFF5014	0.43	+0.6
5,008,789	+		GFF5014	0.44	-0.3
5,008,797	-		GFF5014	0.45	-0.0
5,008,799	-		GFF5014	0.45	-0.5
5,008,807	+		GFF5014	0.46	-2.3
5,008,807	+		GFF5014	0.46	-2.6
5,008,807	+		GFF5014	0.46	+0.4
5,008,818	+		GFF5014	0.47	-0.5
5,008,851	+		GFF5014	0.51	-0.3
5,008,851	+		GFF5014	0.51	-0.9
5,008,851	+		GFF5014	0.51	+1.5
5,008,851	+		GFF5014	0.51	-0.5
5,008,856	+		GFF5014	0.52	+1.5
5,008,858	+		GFF5014	0.52	-0.1
5,008,858	+		GFF5014	0.52	-1.8
5,008,858	+		GFF5014	0.52	+1.4
5,008,858	-		GFF5014	0.52	-0.4
5,008,859	-		GFF5014	0.52	+0.1
5,008,859	-		GFF5014	0.52	-0.6
5,008,859	-		GFF5014	0.52	+0.4
5,008,859	-		GFF5014	0.52	+0.8
5,008,866	-		GFF5014	0.53	-0.6
5,008,866	-		GFF5014	0.53	-0.7
5,008,868	-		GFF5014	0.53	+0.6
5,008,883	+		GFF5014	0.55	-0.5
5,008,888	+		GFF5014	0.55	-0.0
5,008,916	+		GFF5014	0.59	+0.4
5,008,916	+		GFF5014	0.59	-0.0
5,008,924	-		GFF5014	0.59	-0.1
5,008,966	+		GFF5014	0.64	+1.3
5,008,968	+		GFF5014	0.65	-0.2
5,008,968	+		GFF5014	0.65	-0.3
5,008,974	-		GFF5014	0.65	-0.2
5,008,976	+		GFF5014	0.66	-0.7
5,008,976	-		GFF5014	0.66	+1.0
5,008,978	+		GFF5014	0.66	+0.3
5,008,978	+		GFF5014	0.66	+0.5
5,008,987	+		GFF5014	0.67	-0.4
5,008,995	-		GFF5014	0.68	+1.1
5,009,002	+		GFF5014	0.69	-1.5
5,009,010	-		GFF5014	0.69	-1.9
5,009,010	-		GFF5014	0.69	+0.3
5,009,010	-		GFF5014	0.69	-1.7
5,009,010	-		GFF5014	0.69	+0.6
5,009,010	-		GFF5014	0.69	-1.8
5,009,025	-		GFF5014	0.71	+0.6
5,009,027	-		GFF5014	0.71	-0.4
5,009,027	-		GFF5014	0.71	+0.4
5,009,033	-		GFF5014	0.72	-0.7
5,009,050	+		GFF5014	0.74	+0.2
5,009,058	-		GFF5014	0.75	+0.5
5,009,058	-		GFF5014	0.75	+0.6
5,009,058	-		GFF5014	0.75	-0.4
5,009,058	-		GFF5014	0.75	-1.5
5,009,058	-		GFF5014	0.75	+0.3
5,009,058	-		GFF5014	0.75	+0.5
5,009,072	+		GFF5014	0.77	-0.9
5,009,088	+		GFF5014	0.78	+1.1
5,009,088	+		GFF5014	0.78	+0.7
5,009,096	-		GFF5014	0.79	+0.6
5,009,111	-		GFF5014	0.81	+0.2
5,009,127	+		GFF5014	0.83	+1.1
5,009,136	-		GFF5014	0.84	+0.8
5,009,145	+		GFF5014	0.85	-2.4
5,009,150	+		GFF5014	0.86	+0.7
5,009,150	+		GFF5014	0.86	-0.3
5,009,158	-		GFF5014	0.87	+2.7
5,009,158	-		GFF5014	0.87	+1.4
5,009,158	-		GFF5014	0.87	+0.9
5,009,158	-		GFF5014	0.87	-0.8
5,009,158	-		GFF5014	0.87	+0.1
5,009,160	+		GFF5014	0.87	+0.7
5,009,165	+		GFF5014	0.87	-0.4
5,009,165	+		GFF5014	0.87	-1.4
5,009,175	+		GFF5014	0.89	+1.5
5,009,178	-		GFF5014	0.89	-1.7
5,009,183	-		GFF5014	0.89	-0.4
5,009,188	-				+0.5
5,009,192	+				-0.9
5,009,200	-				-1.3
5,009,217	+				+0.1
5,009,217	+				+0.8
5,009,217	+				+0.5
5,009,217	+				+0.7
5,009,217	+				+0.9
5,009,217	+				+1.3
5,009,217	+				-0.5
5,009,225	-				+0.3
5,009,225	-				+0.5
5,009,225	-				+0.1
5,009,225	-				+0.4
5,009,225	-				-2.8
5,009,225	-				-0.7
5,009,225	-				+0.1
5,009,225	-				+0.9
5,009,225	-				+1.2
5,009,225	-				-0.7
5,009,265	-				+1.2
5,009,268	+				-0.4
5,009,274	-				+0.3
5,009,283	-				+0.9
5,009,284	+				+0.4
5,009,284	+				+0.5
5,009,292	-				-0.3
5,009,292	-				-0.5
5,009,292	-				-0.9
5,009,297	+				-0.0
5,009,307	+				-1.3
5,009,315	-				+0.5
5,009,320	-				+1.0
5,009,338	+				-0.0
5,009,346	-				-0.9
5,009,383	+				-0.4
5,009,383	+				-0.6
5,009,383	+				+0.2
5,009,383	+				+1.5
5,009,383	+				+0.4
5,009,383	+				+0.5
5,009,391	-				-1.1
5,009,391	-				-0.0
5,009,404	+				+0.2
5,009,424	+				+0.4
5,009,431	+				-2.2
5,009,443	+				-0.0
5,009,453	+				-1.0
5,009,453	+				-2.3
5,009,453	+				+0.1
5,009,453	+				+0.2
5,009,453	+				-0.3
5,009,453	+				+1.5
5,009,461	-		GFF5015	0.11	-0.2
5,009,461	-		GFF5015	0.11	-0.8
5,009,461	-		GFF5015	0.11	-0.8
5,009,461	-		GFF5015	0.11	-0.1
5,009,472	+		GFF5015	0.12	+1.0
5,009,486	+		GFF5015	0.14	-1.1
5,009,494	-		GFF5015	0.15	-2.0
5,009,494	-		GFF5015	0.15	-1.1
5,009,494	-		GFF5015	0.15	+1.1
5,009,508	+		GFF5015	0.17	+0.5
5,009,508	+		GFF5015	0.17	-2.7
5,009,516	-		GFF5015	0.18	-0.5
5,009,517	-		GFF5015	0.18	-1.2
5,009,520	+		GFF5015	0.18	-0.3
5,009,528	-		GFF5015	0.19	+0.4
5,009,528	-		GFF5015	0.19	-0.4
5,009,545	-		GFF5015	0.21	-0.2
5,009,553	-		GFF5015	0.22	+0.7
5,009,560	-		GFF5015	0.23	+0.2
5,009,560	-		GFF5015	0.23	-0.0
5,009,560	-		GFF5015	0.23	-1.0
5,009,585	+		GFF5015	0.26	-0.9
5,009,600	+		GFF5015	0.28	-0.7
5,009,600	+		GFF5015	0.28	-0.4
5,009,600	+		GFF5015	0.28	+1.7
5,009,600	+		GFF5015	0.28	+0.1
5,009,608	-		GFF5015	0.29	+0.7
5,009,608	-		GFF5015	0.29	+1.0
5,009,608	-		GFF5015	0.29	+0.5
5,009,622	-		GFF5015	0.31	+0.6
5,009,622	-		GFF5015	0.31	-0.0
5,009,624	-		GFF5015	0.31	+0.3
5,009,650	+		GFF5015	0.34	-3.0
5,009,654	-		GFF5015	0.35	+0.4
5,009,663	-		GFF5015	0.36	+0.1
5,009,669	+		GFF5015	0.36	+1.3
5,009,673	-		GFF5015	0.37	-1.5
5,009,673	-		GFF5015	0.37	+0.3
5,009,699	-		GFF5015	0.40	+0.5
5,009,726	+		GFF5015	0.43	-1.5
5,009,729	-		GFF5015	0.44	-0.1
5,009,729	-		GFF5015	0.44	+0.5
5,009,737	+		GFF5015	0.45	+0.8
5,009,737	+		GFF5015	0.45	+0.8
5,009,737	+		GFF5015	0.45	+0.6
5,009,737	+		GFF5015	0.45	+0.1
5,009,737	+		GFF5015	0.45	+0.3
5,009,737	+		GFF5015	0.45	+0.4
5,009,737	+		GFF5015	0.45	+0.9
5,009,737	+		GFF5015	0.45	+0.8
5,009,739	+		GFF5015	0.45	+0.6
5,009,745	-		GFF5015	0.46	-1.5
5,009,745	-		GFF5015	0.46	-0.3
5,009,745	-		GFF5015	0.46	+0.0
5,009,747	+		GFF5015	0.46	+1.4
5,009,747	-		GFF5015	0.46	+0.2
5,009,752	-		GFF5015	0.47	+0.1
5,009,757	-		GFF5015	0.47	-0.2
5,009,760	+		GFF5015	0.48	-0.8
5,009,760	+		GFF5015	0.48	-1.1
5,009,768	-		GFF5015	0.49	-0.6
5,009,768	-		GFF5015	0.49	-0.5
5,009,768	-		GFF5015	0.49	+0.7
5,009,768	-		GFF5015	0.49	+0.3
5,009,768	-		GFF5015	0.49	+0.1
5,009,770	-		GFF5015	0.49	+0.2
5,009,772	+		GFF5015	0.49	+1.2
5,009,780	-		GFF5015	0.50	+1.2
5,009,780	-		GFF5015	0.50	-0.9
5,009,830	-		GFF5015	0.56	-0.8
5,009,835	-		GFF5015	0.57	-1.1
5,009,839	+		GFF5015	0.57	+0.7
5,009,839	+		GFF5015	0.57	-1.2
5,009,844	+		GFF5015	0.58	+1.7
5,009,844	+		GFF5015	0.58	+0.8
5,009,852	-		GFF5015	0.59	+0.8
5,009,879	+		GFF5015	0.62	+1.1
5,009,879	+		GFF5015	0.62	-1.5
5,009,881	-		GFF5015	0.63	+0.3
5,009,892	-		GFF5015	0.64	-0.9
5,009,893	+		GFF5015	0.64	+1.6
5,009,900	+		GFF5015	0.65	-0.1
5,009,900	+		GFF5015	0.65	-2.1
5,009,917	-		GFF5015	0.67	+0.4
5,009,951	+		GFF5015	0.71	-0.5
5,009,951	+		GFF5015	0.71	+0.3
5,009,959	-		GFF5015	0.72	-0.7
5,009,967	-		GFF5015	0.73	-0.2
5,009,967	-		GFF5015	0.73	+0.3
5,009,979	+		GFF5015	0.75	-0.0
5,009,979	+		GFF5015	0.75	+0.9
5,009,983	+		GFF5015	0.75	-2.1
5,009,987	-		GFF5015	0.76	-0.4
5,009,995	+		GFF5015	0.77	-0.7
5,010,005	-		GFF5015	0.78	+0.8
5,010,005	-		GFF5015	0.78	+0.1
5,010,018	+		GFF5015	0.80	-1.2
5,010,018	+		GFF5015	0.80	+1.6
5,010,026	-		GFF5015	0.80	-0.3
5,010,054	-		GFF5015	0.84	-1.6
5,010,054	-		GFF5015	0.84	+0.9
5,010,067	-		GFF5015	0.86	+1.1
5,010,106	+				-0.6
5,010,125	+				-1.8
5,010,125	+				+1.1
5,010,125	+				+0.2
5,010,182	+				+0.5
5,010,182	+				+0.1
5,010,182	+				-1.0
5,010,220	+				-0.8
5,010,227	+				+0.3
5,010,232	+				-0.8
5,010,235	-				-0.2
5,010,240	-				+0.5
5,010,278	+				+0.1
5,010,343	+				-0.1
5,010,343	+				+1.1
5,010,343	+				+0.4
5,010,344	-				+0.1
5,010,349	+				+0.0
5,010,404	-				+0.9
5,010,434	+				+0.7
5,010,444	+				+0.8
5,010,464	+				+2.7
5,010,490	+				+0.1
5,010,494	-				+0.5
5,010,519	+				+0.8
5,010,520	+				+0.9
5,010,526	+				+0.4
5,010,529	-				-0.3
5,010,546	+				-0.0
5,010,546	+				-0.2
5,010,546	+				-0.0
5,010,552	-				-2.0
5,010,554	-				-0.5
5,010,554	-				+0.1
5,010,554	-				+1.9
5,010,570	-				+1.9
5,010,577	+				-0.8
5,010,577	+				+1.0
5,010,577	+				+0.5
5,010,577	+				+0.1
5,010,577	+				-1.2
5,010,577	+				+0.5
5,010,585	-				-1.0
5,010,585	-				+0.1
5,010,585	-				+0.3
5,010,585	-				+1.5
5,010,585	-				+0.1
5,010,585	-				+0.3
5,010,585	-				-1.2
5,010,585	-				+0.2
5,010,585	-				+0.1
5,010,585	-				+1.8
5,010,587	+				+0.8
5,010,589	+				+0.6
5,010,589	+				-0.7
5,010,589	+				+1.0
5,010,589	+				+0.4
5,010,589	+				-2.0
5,010,589	+				-1.1
5,010,589	+				-0.1
5,010,589	+				-0.5
5,010,595	-				+0.3
5,010,595	-				+0.4
5,010,597	-				+1.2
5,010,597	-				-0.3
5,010,597	-				+0.6
5,010,597	-				+0.2
5,010,597	-				-0.5
5,010,597	-				-0.0
5,010,597	-				+1.0
5,010,597	-				+0.1
5,010,601	+				+1.8
5,010,601	+				+1.1
5,010,633	+				+0.8
5,010,633	+				-1.4
5,010,641	-				+0.8
5,010,643	-				-2.1
5,010,643	-				-0.2
5,010,648	-				+0.5
5,010,658	+				-0.3
5,010,658	+				-0.5
5,010,658	+				+0.6
5,010,658	+				-0.2
5,010,658	+				-0.1
5,010,666	-				+1.0
5,010,666	-				+0.5
5,010,666	-				-0.1
5,010,666	-				+0.1
5,010,669	+				+0.3
5,010,677	+				+0.6
5,010,677	+				+0.6
5,010,685	-				-0.8
5,010,685	-				+0.8
5,010,697	+				+0.2
5,010,766	-		GFF5016	0.20	-2.8
5,010,792	+		GFF5016	0.25	+0.2
5,010,795	-		GFF5016	0.25	-0.4
5,010,811	+		GFF5016	0.28	+0.1
5,010,865	+		GFF5016	0.38	-0.4
5,010,865	-		GFF5016	0.38	+1.0
5,010,884	-		GFF5016	0.41	-0.2
5,010,904	+		GFF5016	0.44	+1.0
5,010,914	-		GFF5016	0.46	+0.8
5,010,934	-		GFF5016	0.50	+0.1
5,010,950	-		GFF5016	0.52	-0.8
5,010,956	+		GFF5016	0.53	+0.4
5,010,971	-		GFF5016	0.56	-0.9
5,010,972	+		GFF5016	0.56	+1.2
5,010,980	-		GFF5016	0.58	-0.8
5,010,982	+		GFF5016	0.58	+1.1
5,010,982	+		GFF5016	0.58	+0.3
5,010,985	-		GFF5016	0.58	-0.4
5,010,986	-		GFF5016	0.59	-0.1
5,010,990	-		GFF5016	0.59	-0.5
5,010,990	-		GFF5016	0.59	+0.1
5,010,990	-		GFF5016	0.59	-0.1
5,010,998	+		GFF5016	0.61	-1.9
5,011,006	+		GFF5016	0.62	+0.2
5,011,015	-		GFF5016	0.64	+0.5
5,011,064	+		GFF5016	0.72	-0.4
5,011,072	-		GFF5016	0.74	+1.8
5,011,127	+		GFF5016	0.83	+0.6
5,011,151	-		GFF5016	0.87	+1.2
5,011,169	-				+0.7
5,011,177	+				+1.2