Strain Fitness in Sphingobium sp. HT1-2 around GFF4967

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,964,340	-				-1.0
4,964,374	-				-0.5
4,964,376	-				+0.1
4,964,384	+				-0.8
4,964,390	+				+0.3
4,964,391	+				-1.0
4,964,392	+				-1.8
4,964,398	-				-0.4
4,964,398	-				-0.5
4,964,398	-				+0.3
4,964,400	-				+0.9
4,964,400	-				+0.2
4,964,404	-				-0.6
4,964,419	-				-0.2
4,964,436	+				-0.0
4,964,438	-				+0.5
4,964,444	-				+0.7
4,964,444	-				-1.7
4,964,447	+				-0.4
4,964,447	+				+0.3
4,964,455	-				-1.7
4,964,455	-				+0.5
4,964,462	+				+0.8
4,964,499	+				-0.0
4,964,500	+				+0.4
4,964,500	+				+0.8
4,964,500	+				+0.8
4,964,507	+				-0.6
4,964,508	-				+0.2
4,964,508	-				-2.7
4,964,508	-				-1.3
4,964,508	-				-2.4
4,964,508	-				-0.8
4,964,508	-				+0.9
4,964,515	-				+1.0
4,964,515	-				-0.1
4,964,515	-				-0.5
4,964,538	-				-0.5
4,964,546	+				+1.3
4,964,546	+				+0.7
4,964,546	+				-1.2
4,964,554	-				-0.6
4,964,564	-				+0.7
4,964,578	+				+0.4
4,964,578	+				-0.1
4,964,584	+				+0.6
4,964,592	-				-1.9
4,964,592	-				-1.5
4,964,621	+				-0.1
4,964,644	+				+0.3
4,964,665	+				-0.9
4,964,665	+				-1.1
4,964,673	-		GFF4967	0.10	-0.9
4,964,682	+		GFF4967	0.10	+0.8
4,964,705	+		GFF4967	0.11	-2.4
4,964,705	+		GFF4967	0.11	-0.7
4,964,710	+		GFF4967	0.12	-1.4
4,964,710	+		GFF4967	0.12	-0.5
4,964,716	+		GFF4967	0.12	-0.2
4,964,716	+		GFF4967	0.12	-0.5
4,964,718	-		GFF4967	0.12	-1.5
4,964,724	-		GFF4967	0.12	+0.7
4,964,732	+		GFF4967	0.13	-2.4
4,964,740	-		GFF4967	0.13	-0.8
4,964,740	-		GFF4967	0.13	-0.6
4,964,752	-		GFF4967	0.14	-2.7
4,964,822	-		GFF4967	0.17	-0.9
4,964,834	+		GFF4967	0.17	+0.2
4,964,851	-		GFF4967	0.18	-1.8
4,964,851	-		GFF4967	0.18	+0.4
4,964,862	-		GFF4967	0.19	+0.2
4,964,862	-		GFF4967	0.19	+0.7
4,964,865	+		GFF4967	0.19	-0.0
4,964,865	+		GFF4967	0.19	-0.4
4,964,873	-		GFF4967	0.19	-0.2
4,964,873	-		GFF4967	0.19	-0.7
4,964,873	-		GFF4967	0.19	-0.4
4,964,890	-		GFF4967	0.20	-0.2
4,964,898	+		GFF4967	0.20	-0.0
4,964,901	-		GFF4967	0.20	-1.1
4,964,906	-		GFF4967	0.20	-0.3
4,964,906	-		GFF4967	0.20	-0.1
4,964,906	-		GFF4967	0.20	-1.2
4,964,906	-		GFF4967	0.20	+0.0
4,964,906	-		GFF4967	0.20	+0.2
4,964,906	-		GFF4967	0.20	-3.1
4,964,906	-		GFF4967	0.20	-2.5
4,964,907	-		GFF4967	0.21	-0.3
4,964,913	-		GFF4967	0.21	-1.4
4,964,913	-		GFF4967	0.21	-1.2
4,964,923	+		GFF4967	0.21	-1.2
4,964,923	+		GFF4967	0.21	+0.6
4,964,923	+		GFF4967	0.21	-1.4
4,964,923	+		GFF4967	0.21	-2.3
4,964,931	-		GFF4967	0.22	-0.7
4,964,931	-		GFF4967	0.22	+0.3
4,964,931	-		GFF4967	0.22	-0.8
4,964,931	-		GFF4967	0.22	-1.4
4,964,931	-		GFF4967	0.22	-1.6
4,964,948	-		GFF4967	0.22	-0.9
4,964,948	-		GFF4967	0.22	-0.4
4,964,975	-		GFF4967	0.24	-2.4
4,965,036	-		GFF4967	0.26	-0.8
4,965,036	-		GFF4967	0.26	+1.3
4,965,047	+		GFF4967	0.27	-1.6
4,965,055	-		GFF4967	0.27	-0.9
4,965,055	-		GFF4967	0.27	-1.6
4,965,072	-		GFF4967	0.28	-0.6
4,965,073	+		GFF4967	0.28	-1.1
4,965,074	-		GFF4967	0.28	+0.2
4,965,074	-		GFF4967	0.28	-2.9
4,965,075	-		GFF4967	0.28	-0.8
4,965,081	-		GFF4967	0.28	-0.7
4,965,090	+		GFF4967	0.29	-1.7
4,965,127	+		GFF4967	0.30	+0.3
4,965,127	+		GFF4967	0.30	+0.4
4,965,127	+		GFF4967	0.30	-0.9
4,965,127	+		GFF4967	0.30	+0.6
4,965,132	+		GFF4967	0.31	+0.6
4,965,135	-		GFF4967	0.31	-1.0
4,965,135	-		GFF4967	0.31	+0.4
4,965,135	-		GFF4967	0.31	-0.2
4,965,140	-		GFF4967	0.31	-2.0
4,965,165	-		GFF4967	0.32	-0.4
4,965,165	-		GFF4967	0.32	+0.5
4,965,168	+		GFF4967	0.32	-0.0
4,965,168	+		GFF4967	0.32	+1.1
4,965,169	+		GFF4967	0.32	-1.5
4,965,169	-		GFF4967	0.32	-1.0
4,965,176	-		GFF4967	0.33	-1.6
4,965,176	-		GFF4967	0.33	-2.6
4,965,177	-		GFF4967	0.33	-2.9
4,965,177	-		GFF4967	0.33	-0.3
4,965,194	+		GFF4967	0.33	-1.3
4,965,201	-		GFF4967	0.34	+1.6
4,965,202	-		GFF4967	0.34	+1.3
4,965,212	-		GFF4967	0.34	-0.9
4,965,214	+		GFF4967	0.34	-0.4
4,965,235	-		GFF4967	0.35	-1.1
4,965,258	-		GFF4967	0.36	+0.0
4,965,310	+		GFF4967	0.39	-0.4
4,965,310	+		GFF4967	0.39	-0.5
4,965,310	+		GFF4967	0.39	-1.6
4,965,310	+		GFF4967	0.39	+0.3
4,965,318	-		GFF4967	0.39	+1.1
4,965,318	-		GFF4967	0.39	-2.3
4,965,318	-		GFF4967	0.39	-2.1
4,965,319	+		GFF4967	0.39	-0.5
4,965,329	+		GFF4967	0.40	-2.8
4,965,337	-		GFF4967	0.40	+0.8
4,965,368	-		GFF4967	0.41	-2.2
4,965,370	+		GFF4967	0.41	-0.3
4,965,372	+		GFF4967	0.41	-0.3
4,965,380	-		GFF4967	0.42	-1.0
4,965,386	+		GFF4967	0.42	+1.1
4,965,391	+		GFF4967	0.42	-1.5
4,965,393	-		GFF4967	0.42	-1.6
4,965,393	-		GFF4967	0.42	+0.4
4,965,396	+		GFF4967	0.43	-0.5
4,965,399	-		GFF4967	0.43	+1.0
4,965,404	-		GFF4967	0.43	-0.4
4,965,404	-		GFF4967	0.43	-0.0
4,965,420	-		GFF4967	0.44	+0.1
4,965,427	+		GFF4967	0.44	-0.3
4,965,435	-		GFF4967	0.44	-0.5
4,965,435	-		GFF4967	0.44	-0.4
4,965,435	-		GFF4967	0.44	-1.0
4,965,435	-		GFF4967	0.44	-0.8
4,965,440	+		GFF4967	0.45	-1.5
4,965,445	+		GFF4967	0.45	-1.8
4,965,445	+		GFF4967	0.45	+0.2
4,965,445	+		GFF4967	0.45	-0.4
4,965,445	+		GFF4967	0.45	-1.0
4,965,445	+		GFF4967	0.45	-0.0
4,965,445	+		GFF4967	0.45	+1.1
4,965,445	+		GFF4967	0.45	+0.7
4,965,445	+		GFF4967	0.45	-0.8
4,965,445	+		GFF4967	0.45	-1.5
4,965,445	+		GFF4967	0.45	+2.0
4,965,445	+		GFF4967	0.45	-1.9
4,965,445	+		GFF4967	0.45	-1.5
4,965,445	+		GFF4967	0.45	+0.7
4,965,453	-		GFF4967	0.45	-2.6
4,965,453	-		GFF4967	0.45	-0.6
4,965,453	-		GFF4967	0.45	-0.7
4,965,453	-		GFF4967	0.45	-0.4
4,965,453	-		GFF4967	0.45	+0.0
4,965,453	-		GFF4967	0.45	-1.8
4,965,453	-		GFF4967	0.45	+0.4
4,965,453	-		GFF4967	0.45	-0.1
4,965,453	-		GFF4967	0.45	-0.0
4,965,453	-		GFF4967	0.45	+0.9
4,965,453	-		GFF4967	0.45	-2.0
4,965,453	-		GFF4967	0.45	+0.4
4,965,453	-		GFF4967	0.45	+0.2
4,965,453	-		GFF4967	0.45	-0.1
4,965,453	-		GFF4967	0.45	-1.4
4,965,453	-		GFF4967	0.45	-1.8
4,965,507	-		GFF4967	0.48	+0.1
4,965,509	+		GFF4967	0.48	+0.9
4,965,513	-		GFF4967	0.48	+0.2
4,965,517	-		GFF4967	0.48	-0.2
4,965,517	-		GFF4967	0.48	+0.3
4,965,544	+		GFF4967	0.49	-2.1
4,965,544	+		GFF4967	0.49	-2.7
4,965,544	+		GFF4967	0.49	-1.5
4,965,549	+		GFF4967	0.49	+0.3
4,965,552	-		GFF4967	0.50	+0.2
4,965,552	-		GFF4967	0.50	-0.7
4,965,552	-		GFF4967	0.50	+1.6
4,965,552	-		GFF4967	0.50	-1.2
4,965,580	+		GFF4967	0.51	-0.4
4,965,598	-		GFF4967	0.52	+0.2
4,965,613	-		GFF4967	0.52	+0.5
4,965,633	+		GFF4967	0.53	+0.1
4,965,649	+		GFF4967	0.54	+1.5
4,965,659	+		GFF4967	0.54	-1.9
4,965,659	+		GFF4967	0.54	-0.4
4,965,689	+		GFF4967	0.56	+1.2
4,965,693	+		GFF4967	0.56	-2.2
4,965,693	+		GFF4967	0.56	-0.3
4,965,694	+		GFF4967	0.56	-1.6
4,965,694	+		GFF4967	0.56	-2.8
4,965,694	+		GFF4967	0.56	+0.4
4,965,694	+		GFF4967	0.56	-2.0
4,965,694	+		GFF4967	0.56	-0.6
4,965,702	-		GFF4967	0.56	-0.8
4,965,702	-		GFF4967	0.56	+0.7
4,965,703	-		GFF4967	0.56	+0.1
4,965,729	-		GFF4967	0.58	-0.8
4,965,729	-		GFF4967	0.58	-0.0
4,965,731	+		GFF4967	0.58	-1.0
4,965,731	+		GFF4967	0.58	-0.0
4,965,731	+		GFF4967	0.58	+0.4
4,965,731	+		GFF4967	0.58	-0.5
4,965,739	-		GFF4967	0.58	-2.7
4,965,739	-		GFF4967	0.58	-0.5
4,965,739	-		GFF4967	0.58	-0.4
4,965,739	-		GFF4967	0.58	-1.1
4,965,739	-		GFF4967	0.58	-1.0
4,965,739	-		GFF4967	0.58	+0.1
4,965,764	+		GFF4967	0.59	-0.1
4,965,772	-		GFF4967	0.60	+0.4
4,965,785	+		GFF4967	0.60	-0.4
4,965,793	-		GFF4967	0.60	-1.4
4,965,793	-		GFF4967	0.60	-1.6
4,965,793	-		GFF4967	0.60	-1.9
4,965,816	-		GFF4967	0.61	+1.2
4,965,833	+		GFF4967	0.62	-0.6
4,965,838	+		GFF4967	0.62	-0.8
4,965,838	+		GFF4967	0.62	+0.1
4,965,838	+		GFF4967	0.62	-1.8
4,965,838	+		GFF4967	0.62	-0.4
4,965,838	+		GFF4967	0.62	+0.0
4,965,838	+		GFF4967	0.62	-1.1
4,965,838	+		GFF4967	0.62	-0.8
4,965,838	+		GFF4967	0.62	+0.1
4,965,838	+		GFF4967	0.62	-0.8
4,965,838	+		GFF4967	0.62	+0.7
4,965,838	+		GFF4967	0.62	-1.7
4,965,838	+		GFF4967	0.62	-0.6
4,965,841	-		GFF4967	0.63	+0.4
4,965,846	-		GFF4967	0.63	-0.5
4,965,846	-		GFF4967	0.63	+0.7
4,965,846	-		GFF4967	0.63	-0.4
4,965,846	-		GFF4967	0.63	+0.9
4,965,846	-		GFF4967	0.63	-0.3
4,965,846	-		GFF4967	0.63	-0.1
4,965,846	-		GFF4967	0.63	-0.6
4,965,848	+		GFF4967	0.63	-0.7
4,965,848	+		GFF4967	0.63	-0.8
4,965,848	+		GFF4967	0.63	+0.6
4,965,848	+		GFF4967	0.63	-3.6
4,965,856	-		GFF4967	0.63	+0.6
4,965,856	-		GFF4967	0.63	-0.4
4,965,856	-		GFF4967	0.63	-1.1
4,965,856	-		GFF4967	0.63	-1.8
4,965,856	-		GFF4967	0.63	-1.4
4,965,856	-		GFF4967	0.63	+1.0
4,965,856	-		GFF4967	0.63	+0.9
4,965,889	+		GFF4967	0.65	-2.8
4,965,897	-		GFF4967	0.65	-1.3
4,965,910	+		GFF4967	0.66	-0.8
4,965,918	-		GFF4967	0.66	+0.2
4,965,918	-		GFF4967	0.66	+0.2
4,965,918	-		GFF4967	0.66	-0.9
4,965,918	-		GFF4967	0.66	+0.2
4,965,918	-		GFF4967	0.66	+0.3
4,965,928	+		GFF4967	0.67	-1.2
4,965,937	-		GFF4967	0.67	-3.3
4,965,937	-		GFF4967	0.67	-1.1
4,965,961	-		GFF4967	0.68	-1.2
4,966,007	+		GFF4967	0.70	-1.7
4,966,007	+		GFF4967	0.70	-0.3
4,966,007	+		GFF4967	0.70	-1.8
4,966,026	+		GFF4967	0.71	+0.7
4,966,026	+		GFF4967	0.71	-1.7
4,966,033	+		GFF4967	0.71	-1.2
4,966,034	-		GFF4967	0.71	+0.1
4,966,048	+		GFF4967	0.72	-1.0
4,966,052	-		GFF4967	0.72	-0.7
4,966,056	-		GFF4967	0.72	+0.4
4,966,056	-		GFF4967	0.72	+0.5
4,966,076	+		GFF4967	0.73	-1.7
4,966,084	-		GFF4967	0.74	-1.7
4,966,086	-		GFF4967	0.74	-1.6
4,966,090	-		GFF4967	0.74	-0.8
4,966,102	-		GFF4967	0.74	-3.4
4,966,177	-		GFF4967	0.78	-0.6
4,966,186	+		GFF4967	0.78	+0.6
4,966,191	+		GFF4967	0.78	+1.4
4,966,229	-		GFF4967	0.80	-1.9
4,966,246	-		GFF4967	0.81	-1.7
4,966,276	+		GFF4967	0.82	-2.0
4,966,283	-		GFF4967	0.83	-0.4
4,966,291	-		GFF4967	0.83	-3.1
4,966,293	-		GFF4967	0.83	-0.8
4,966,293	-		GFF4967	0.83	-0.3
4,966,294	-		GFF4967	0.83	-0.9
4,966,333	-		GFF4967	0.85	-0.0
4,966,343	-		GFF4967	0.85	-0.5
4,966,354	+		GFF4967	0.86	+0.3
4,966,380	+		GFF4967	0.87	-1.2
4,966,380	+		GFF4967	0.87	+0.1
4,966,388	-		GFF4967	0.87	+0.7
4,966,388	-		GFF4967	0.87	+0.2
4,966,388	-		GFF4967	0.87	-0.3
4,966,393	-		GFF4967	0.87	+0.8
4,966,393	-		GFF4967	0.87	+0.2
4,966,396	+		GFF4967	0.88	-0.0
4,966,410	-		GFF4967	0.88	-1.1
4,966,419	-		GFF4967	0.89	-0.9
4,966,428	-		GFF4967	0.89	-1.8
4,966,444	-		GFF4967	0.90	-0.4
4,966,460	+				+0.5
4,966,460	+				+0.3
4,966,462	-				-1.6
4,966,468	-				+0.2
4,966,502	-				-1.0
4,966,508	-				-1.0
4,966,509	-				-0.0
4,966,509	-				-1.3
4,966,509	-				+0.6
4,966,541	+				+0.7
4,966,541	+				-0.3
4,966,549	-				-2.0
4,966,556	+				-0.9
4,966,556	+				-0.6
4,966,556	+				+0.5
4,966,556	+				-1.5
4,966,563	-				-0.8
4,966,604	+				-2.3
4,966,611	+				+0.0
4,966,643	-				+0.3
4,966,643	-				-0.3
4,966,643	-				+0.9
4,966,643	-				+0.1
4,966,645	+				+0.5
4,966,658	+				-1.7
4,966,658	+				-0.8
4,966,668	-				-0.9
4,966,669	+				+0.4
4,966,670	+				+0.1
4,966,670	+				-0.0
4,966,670	+				-0.3
4,966,678	-				+0.4
4,966,678	-				-0.1
4,966,679	+				+0.9
4,966,704	+				+0.2
4,966,707	+				+1.2
4,966,727	-				-1.3
4,966,727	-				+0.1
4,966,774	+				+0.1
4,966,784	+				-2.8
4,966,784	+				-0.9
4,966,784	+				+0.3
4,966,784	+				-2.3
4,966,784	+				-0.6
4,966,784	+				-0.3
4,966,784	+				-2.2
4,966,786	+				-1.5
4,966,791	+				+0.7
4,966,791	+				+0.7
4,966,791	+				-1.2
4,966,791	+				-0.2
4,966,791	+				+1.1
4,966,791	+				-1.0
4,966,791	+				+0.2
4,966,791	+				-0.6
4,966,791	+				-0.8
4,966,792	-				-0.7
4,966,792	-				-2.5
4,966,792	-				-0.3
4,966,792	-				+0.7
4,966,794	-				+0.7
4,966,796	+				-0.1
4,966,796	+				-0.7
4,966,796	+				-2.1
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4,966,799	-				-0.2
4,966,799	-				+1.0
4,966,799	-				+0.2
4,966,799	-				+0.1
4,966,799	-				-1.7
4,966,799	-				-1.7
4,966,804	-				-0.2
4,966,804	-				+0.3
4,966,804	-				-1.6
4,966,804	-				-0.9
4,966,809	-				-0.6
4,966,810	+				-1.3
4,966,813	-				-0.5
4,966,845	+				-0.4
4,966,845	+				-0.2
4,966,845	+				-1.0
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4,966,850	+				+1.0
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4,966,850	+				-0.3
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4,966,850	+				+0.5
4,966,850	+				+0.4
4,966,850	+				-1.1
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4,966,850	+				+0.2
4,966,850	+				-0.7
4,966,850	+				-1.1
4,966,850	+				-1.0
4,966,850	+				-2.1
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4,966,858	-				+0.3
4,966,858	-				+0.9
4,966,858	-				+1.1
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4,966,858	-				-0.1
4,966,858	-				+0.2
4,966,858	-				-1.3
4,966,863	-				-2.2
4,966,873	+				-0.1
4,966,873	+				-0.2
4,966,879	+				-0.6
4,966,881	-				+1.2
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4,967,486	+		GFF4968	0.72	-2.7
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4,967,491	+		GFF4968	0.73	-2.1
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4,967,528	+		GFF4968	0.77	-0.5
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4,967,528	+		GFF4968	0.77	-1.6
4,967,528	+		GFF4968	0.77	+0.7
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4,967,531	-		GFF4968	0.77	+0.5
4,967,531	-		GFF4968	0.77	-0.1
4,967,531	-		GFF4968	0.77	+0.2
4,967,531	-		GFF4968	0.77	-0.4
4,967,531	-		GFF4968	0.77	-1.5
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4,967,531	-		GFF4968	0.77	-0.6
4,967,533	+		GFF4968	0.77	+0.5
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4,967,536	-		GFF4968	0.78	-0.3
4,967,536	-		GFF4968	0.78	-1.8
4,967,541	-		GFF4968	0.78	+0.5
4,967,541	-		GFF4968	0.78	-2.2
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4,967,568	+		GFF4968	0.81	-0.2
4,967,568	+		GFF4968	0.81	-1.1
4,967,568	+		GFF4968	0.81	+0.2
4,967,568	+		GFF4968	0.81	-0.1
4,967,572	+		GFF4968	0.81	-0.2
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4,967,586	+		GFF4968	0.83	+0.9
4,967,588	-		GFF4968	0.83	+0.0
4,967,588	-		GFF4968	0.83	+1.3
4,967,588	-		GFF4968	0.83	+0.3
4,967,597	+		GFF4968	0.84	-2.0
4,967,599	+		GFF4968	0.84	-2.6
4,967,599	-		GFF4968	0.84	-0.5
4,967,620	-		GFF4968	0.86	-0.6
4,967,627	-		GFF4968	0.87	-2.2
4,967,643	+		GFF4968	0.89	-1.7
4,967,648	+		GFF4968	0.89	-0.3
4,967,648	+		GFF4968	0.89	-0.3
4,967,657	+				-0.6
4,967,662	+				-1.2
4,967,665	-				+1.1