Strain Fitness in Sphingobium sp. HT1-2 around GFF4935

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,926,005	-				+1.0
4,926,005	-				-1.5
4,926,031	-				+0.6
4,926,033	-				-0.2
4,926,043	+				-0.8
4,926,052	+				+0.4
4,926,055	-				-1.3
4,926,085	-				+0.6
4,926,092	+				-0.4
4,926,100	-				-0.8
4,926,100	-				-0.5
4,926,110	-				-1.2
4,926,110	-				-0.1
4,926,110	-				+0.4
4,926,126	+				+0.2
4,926,136	+				-2.2
4,926,141	+				-0.9
4,926,149	-		GFF4934	0.11	-0.2
4,926,172	-		GFF4934	0.13	-2.0
4,926,174	+		GFF4934	0.14	-0.4
4,926,174	+		GFF4934	0.14	-1.4
4,926,174	+		GFF4934	0.14	+0.1
4,926,174	+		GFF4934	0.14	-0.5
4,926,174	+		GFF4934	0.14	-0.0
4,926,174	+		GFF4934	0.14	+0.6
4,926,174	+		GFF4934	0.14	+0.3
4,926,174	+		GFF4934	0.14	+0.4
4,926,177	-		GFF4934	0.14	-0.6
4,926,182	-		GFF4934	0.15	-0.7
4,926,182	-		GFF4934	0.15	+0.7
4,926,182	-		GFF4934	0.15	-0.3
4,926,182	-		GFF4934	0.15	-1.7
4,926,182	-		GFF4934	0.15	-0.5
4,926,182	-		GFF4934	0.15	-0.3
4,926,182	-		GFF4934	0.15	+0.2
4,926,182	-		GFF4934	0.15	-1.5
4,926,182	-		GFF4934	0.15	-0.5
4,926,182	-		GFF4934	0.15	-0.7
4,926,184	+		GFF4934	0.15	-2.0
4,926,184	+		GFF4934	0.15	-0.2
4,926,184	+		GFF4934	0.15	+0.4
4,926,192	-		GFF4934	0.16	-0.1
4,926,192	-		GFF4934	0.16	-0.4
4,926,206	+		GFF4934	0.18	-0.8
4,926,212	+		GFF4934	0.18	+0.4
4,926,213	+		GFF4934	0.18	-1.1
4,926,214	-		GFF4934	0.19	-0.5
4,926,219	+		GFF4934	0.19	-0.8
4,926,226	-		GFF4934	0.20	-1.2
4,926,226	-		GFF4934	0.20	-1.7
4,926,228	+		GFF4934	0.20	-0.4
4,926,236	-		GFF4934	0.21	-1.4
4,926,246	+		GFF4934	0.23	-2.5
4,926,256	-		GFF4934	0.24	-0.6
4,926,265	+		GFF4934	0.25	-1.5
4,926,265	+		GFF4934	0.25	-0.1
4,926,265	+		GFF4934	0.25	-1.8
4,926,267	+		GFF4934	0.25	-1.5
4,926,273	-		GFF4934	0.26	-0.1
4,926,273	-		GFF4934	0.26	-2.2
4,926,273	-		GFF4934	0.26	-2.2
4,926,273	-		GFF4934	0.26	-0.8
4,926,275	+		GFF4934	0.26	-1.0
4,926,283	-		GFF4934	0.27	-0.3
4,926,286	+		GFF4934	0.28	-1.3
4,926,292	+		GFF4934	0.28	-0.0
4,926,294	-		GFF4934	0.29	-1.6
4,926,294	-		GFF4934	0.29	-0.4
4,926,294	-		GFF4934	0.29	-0.7
4,926,294	-		GFF4934	0.29	-0.5
4,926,303	-		GFF4934	0.30	+0.4
4,926,313	-		GFF4934	0.31	-2.1
4,926,339	+		GFF4934	0.34	+0.3
4,926,401	-		GFF4934	0.42	-0.7
4,926,436	-		GFF4934	0.46	-1.4
4,926,447	-		GFF4934	0.47	-2.9
4,926,447	-		GFF4934	0.47	-0.9
4,926,486	-		GFF4934	0.52	-0.9
4,926,491	+		GFF4934	0.53	-1.1
4,926,496	+		GFF4934	0.54	-0.9
4,926,496	+		GFF4934	0.54	-1.6
4,926,496	+		GFF4934	0.54	-0.2
4,926,504	-		GFF4934	0.55	-2.4
4,926,509	-		GFF4934	0.55	-1.6
4,926,526	+		GFF4934	0.57	-0.6
4,926,553	+		GFF4934	0.61	-0.7
4,926,554	-		GFF4934	0.61	+0.1
4,926,572	+		GFF4934	0.63	+0.4
4,926,576	+		GFF4934	0.63	-1.7
4,926,584	-		GFF4934	0.64	-0.7
4,926,615	+		GFF4934	0.68	-0.9
4,926,617	+		GFF4934	0.69	-1.0
4,926,622	+		GFF4934	0.69	-1.2
4,926,628	+		GFF4934	0.70	-0.1
4,926,636	-		GFF4934	0.71	-0.8
4,926,667	+		GFF4934	0.75	-0.8
4,926,667	+		GFF4934	0.75	-1.9
4,926,667	+		GFF4934	0.75	-1.9
4,926,670	-		GFF4934	0.75	-1.9
4,926,675	-		GFF4934	0.76	-1.4
4,926,677	+		GFF4934	0.76	-0.3
4,926,680	+		GFF4934	0.76	+0.7
4,926,688	-		GFF4934	0.77	-0.7
4,926,689	+		GFF4934	0.77	+0.1
4,926,689	+		GFF4934	0.77	-1.2
4,926,689	+		GFF4934	0.77	+0.2
4,926,693	-		GFF4934	0.78	-1.6
4,926,704	-		GFF4934	0.79	+1.4
4,926,709	+		GFF4934	0.80	+0.3
4,926,711	+		GFF4934	0.80	-0.2
4,926,711	+		GFF4934	0.80	-1.2
4,926,711	+		GFF4934	0.80	-1.8
4,926,711	+		GFF4934	0.80	-1.2
4,926,714	-		GFF4934	0.81	-1.8
4,926,719	-		GFF4934	0.81	-1.8
4,926,758	+		GFF4934	0.86	-2.3
4,926,783	-		GFF4934	0.89	-1.3
4,926,783	-		GFF4934	0.89	-1.0
4,926,794	+				-2.1
4,926,799	+				+0.6
4,926,807	+				+0.4
4,926,807	-				-0.5
4,926,812	-				-1.6
4,926,812	-				-1.6
4,926,818	+				-1.1
4,926,826	-				-0.6
4,926,826	-				-0.8
4,926,827	+				-1.0
4,926,847	-				-2.2
4,926,864	+				-0.6
4,926,866	+				+0.4
4,926,872	-				-2.5
4,926,874	+				-0.7
4,926,882	+				+0.1
4,926,890	+				+0.1
4,926,890	+				-0.5
4,926,890	+				+0.2
4,926,890	-				-2.7
4,926,895	+				-0.5
4,926,898	-				-1.1
4,926,898	-				-0.9
4,926,931	-				-0.5
4,926,931	-				-0.2
4,926,948	+				-0.3
4,926,948	+				-0.9
4,926,954	-				-0.1
4,926,974	-				+0.2
4,926,980	+				-1.3
4,926,980	+				-1.2
4,926,982	+				-1.8
4,926,988	-				-0.5
4,926,988	-				-1.3
4,926,990	-				-1.3
4,926,990	-				-2.1
4,926,997	+				-0.8
4,926,999	+				-3.2
4,927,007	-				-1.9
4,927,026	+				+0.1
4,927,056	+				+0.1
4,927,056	+				+0.5
4,927,066	-		GFF4935	0.11	-0.4
4,927,079	-		GFF4935	0.13	-2.9
4,927,087	+		GFF4935	0.14	-1.8
4,927,097	-		GFF4935	0.15	+0.0
4,927,111	+		GFF4935	0.17	-0.8
4,927,117	-		GFF4935	0.18	-1.1
4,927,124	+		GFF4935	0.19	-1.6
4,927,143	-		GFF4935	0.22	-1.3
4,927,149	+		GFF4935	0.22	-0.0
4,927,165	+		GFF4935	0.25	+0.7
4,927,165	+		GFF4935	0.25	+1.4
4,927,165	+		GFF4935	0.25	-0.3
4,927,180	+		GFF4935	0.27	-1.5
4,927,254	+		GFF4935	0.37	-0.5
4,927,255	-		GFF4935	0.37	-2.0
4,927,258	-		GFF4935	0.37	-0.4
4,927,259	+		GFF4935	0.37	-0.3
4,927,271	-		GFF4935	0.39	-0.7
4,927,288	+		GFF4935	0.41	-0.3
4,927,293	-		GFF4935	0.42	-0.4
4,927,296	-		GFF4935	0.42	-0.6
4,927,308	-		GFF4935	0.44	-0.7
4,927,309	-		GFF4935	0.44	-0.8
4,927,309	-		GFF4935	0.44	-0.5
4,927,309	-		GFF4935	0.44	-0.3
4,927,315	-		GFF4935	0.45	+1.1
4,927,327	-		GFF4935	0.47	-0.6
4,927,327	-		GFF4935	0.47	-1.1
4,927,327	-		GFF4935	0.47	-1.3
4,927,353	+		GFF4935	0.50	+0.6
4,927,382	+		GFF4935	0.54	-2.9
4,927,393	+		GFF4935	0.56	-0.6
4,927,403	+		GFF4935	0.57	-0.7
4,927,431	-		GFF4935	0.61	-1.8
4,927,438	+		GFF4935	0.62	-0.4
4,927,458	-		GFF4935	0.64	-2.6
4,927,477	-		GFF4935	0.67	+0.4
4,927,493	+		GFF4935	0.69	-0.9
4,927,501	-		GFF4935	0.70	+0.6
4,927,518	-		GFF4935	0.73	-1.1
4,927,607	+		GFF4935	0.85	-1.0
4,927,613	-		GFF4935	0.86	-0.3
4,927,615	-		GFF4935	0.86	-1.5
4,927,619	+		GFF4935	0.86	-1.2
4,927,634	+		GFF4935	0.88	-0.1
4,927,634	+		GFF4935	0.88	-0.8
4,927,642	-		GFF4935	0.90	-1.0
4,927,642	-		GFF4935	0.90	-0.6
4,927,642	-		GFF4935	0.90	-0.1
4,927,642	-		GFF4935	0.90	+0.5
4,927,662	+				-1.3
4,927,668	+				-1.0
4,927,670	-				-0.8
4,927,676	-				-1.2
4,927,699	+				-1.6
4,927,714	+				-1.3
4,927,729	+				+0.4
4,927,729	+				+0.1
4,927,748	+				-0.6
4,927,773	+				-0.5
4,927,799	-				-0.2
4,927,800	+				+0.6
4,927,800	+				-1.9
4,927,808	-				-1.5
4,927,819	+				-1.3
4,927,819	+				-0.6
4,927,819	+				-1.0
4,927,819	+				+0.1
4,927,821	+				+0.2
4,927,821	+				-1.8
4,927,826	+				-1.1
4,927,826	+				-2.2
4,927,829	-				-0.9
4,927,829	-				-0.8
4,927,855	+				-1.5
4,927,862	+				-0.0
4,927,870	-				+1.0
4,927,888	+				-1.6
4,927,888	+				-0.6
4,927,911	-		GFF4936	0.11	+0.8
4,927,937	-		GFF4936	0.13	-1.6
4,927,944	+		GFF4936	0.13	-1.9
4,927,948	+		GFF4936	0.13	-0.1
4,927,948	+		GFF4936	0.13	+1.4
4,927,962	+		GFF4936	0.14	-0.6
4,927,962	+		GFF4936	0.14	-0.9
4,927,962	+		GFF4936	0.14	+0.5
4,927,962	+		GFF4936	0.14	-0.7
4,927,962	+		GFF4936	0.14	-2.5
4,927,962	-		GFF4936	0.14	-1.2
4,927,970	-		GFF4936	0.15	+0.8
4,927,970	-		GFF4936	0.15	-1.3
4,927,970	-		GFF4936	0.15	-0.0
4,927,970	-		GFF4936	0.15	-0.7
4,927,970	-		GFF4936	0.15	+0.3
4,927,972	+		GFF4936	0.15	+0.0
4,928,023	+		GFF4936	0.19	-2.5
4,928,028	+		GFF4936	0.19	-0.7
4,928,028	-		GFF4936	0.19	-0.6
4,928,031	-		GFF4936	0.19	-1.4
4,928,067	-		GFF4936	0.22	-0.7
4,928,068	+		GFF4936	0.22	-0.3
4,928,097	-		GFF4936	0.24	-1.1
4,928,114	+		GFF4936	0.25	-1.4
4,928,140	+		GFF4936	0.27	-3.2
4,928,156	+		GFF4936	0.28	+0.0
4,928,156	+		GFF4936	0.28	-2.3
4,928,156	+		GFF4936	0.28	-2.1
4,928,160	+		GFF4936	0.28	-2.1
4,928,164	-		GFF4936	0.28	-0.4
4,928,164	-		GFF4936	0.28	-0.4
4,928,175	+		GFF4936	0.29	-1.2
4,928,177	+		GFF4936	0.29	-1.9
4,928,177	+		GFF4936	0.29	-0.7
4,928,177	+		GFF4936	0.29	-2.2
4,928,177	+		GFF4936	0.29	-0.9
4,928,177	+		GFF4936	0.29	-1.3
4,928,182	+		GFF4936	0.29	+0.8
4,928,182	+		GFF4936	0.29	-0.0
4,928,182	+		GFF4936	0.29	+0.3
4,928,182	+		GFF4936	0.29	-0.1
4,928,182	+		GFF4936	0.29	-1.6
4,928,185	-		GFF4936	0.30	-1.6
4,928,185	-		GFF4936	0.30	-1.9
4,928,185	-		GFF4936	0.30	+0.5
4,928,185	-		GFF4936	0.30	-0.5
4,928,190	-		GFF4936	0.30	-0.6
4,928,190	-		GFF4936	0.30	-0.6
4,928,210	+		GFF4936	0.31	-0.8
4,928,220	+		GFF4936	0.32	+0.0
4,928,228	-		GFF4936	0.33	-0.4
4,928,230	+		GFF4936	0.33	+0.1
4,928,230	+		GFF4936	0.33	-0.9
4,928,230	+		GFF4936	0.33	+0.1
4,928,230	+		GFF4936	0.33	-0.2
4,928,232	+		GFF4936	0.33	+0.4
4,928,238	-		GFF4936	0.33	-0.7
4,928,238	-		GFF4936	0.33	-0.2
4,928,240	-		GFF4936	0.33	-2.4
4,928,245	-		GFF4936	0.34	-2.0
4,928,260	-		GFF4936	0.35	+0.6
4,928,277	+		GFF4936	0.36	+0.1
4,928,280	-		GFF4936	0.36	-2.5
4,928,292	-		GFF4936	0.37	-0.5
4,928,294	+		GFF4936	0.37	-2.4
4,928,302	-		GFF4936	0.38	+1.4
4,928,307	-		GFF4936	0.38	+0.6
4,928,325	-		GFF4936	0.39	-0.1
4,928,330	-		GFF4936	0.39	-0.0
4,928,330	-		GFF4936	0.39	-0.2
4,928,340	+		GFF4936	0.40	-0.5
4,928,345	+		GFF4936	0.40	+0.1
4,928,345	+		GFF4936	0.40	-0.2
4,928,345	+		GFF4936	0.40	-0.3
4,928,345	+		GFF4936	0.40	+0.1
4,928,345	+		GFF4936	0.40	-0.4
4,928,345	+		GFF4936	0.40	+0.8
4,928,345	+		GFF4936	0.40	-0.4
4,928,345	+		GFF4936	0.40	+0.4
4,928,345	+		GFF4936	0.40	-0.3
4,928,348	-		GFF4936	0.41	-0.9
4,928,348	-		GFF4936	0.41	-0.0
4,928,350	+		GFF4936	0.41	+0.4
4,928,350	+		GFF4936	0.41	-1.5
4,928,350	+		GFF4936	0.41	-1.1
4,928,350	+		GFF4936	0.41	+0.3
4,928,350	+		GFF4936	0.41	-1.9
4,928,350	+		GFF4936	0.41	-1.2
4,928,350	+		GFF4936	0.41	+0.0
4,928,350	+		GFF4936	0.41	+0.3
4,928,350	+		GFF4936	0.41	+1.2
4,928,350	+		GFF4936	0.41	-1.0
4,928,350	+		GFF4936	0.41	-1.0
4,928,350	+		GFF4936	0.41	+0.2
4,928,350	+		GFF4936	0.41	+0.2
4,928,350	+		GFF4936	0.41	-0.6
4,928,350	+		GFF4936	0.41	-0.9
4,928,350	+		GFF4936	0.41	-1.5
4,928,350	+		GFF4936	0.41	-2.7
4,928,350	+		GFF4936	0.41	-1.2
4,928,353	-		GFF4936	0.41	-2.0
4,928,353	-		GFF4936	0.41	-1.5
4,928,353	-		GFF4936	0.41	-0.7
4,928,353	-		GFF4936	0.41	-0.7
4,928,353	-		GFF4936	0.41	-0.3
4,928,353	-		GFF4936	0.41	+0.6
4,928,353	-		GFF4936	0.41	-0.0
4,928,353	-		GFF4936	0.41	-1.5
4,928,353	-		GFF4936	0.41	-2.8
4,928,358	-		GFF4936	0.41	+0.1
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