Strain Fitness in Sphingobium sp. HT1-2 around GFF4925

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,916,003	+				-1.9
4,916,005	+				-1.8
4,916,008	-				-1.7
4,916,011	-				-1.5
4,916,011	-				-1.2
4,916,011	-				+0.7
4,916,013	+				-2.5
4,916,013	-				-0.7
4,916,013	-				+1.2
4,916,021	-				-0.8
4,916,021	-				-0.5
4,916,035	+				-0.5
4,916,042	-				-0.1
4,916,043	-				-2.4
4,916,043	-				-0.0
4,916,088	-				-1.1
4,916,101	-				-0.6
4,916,106	+				-0.7
4,916,111	-		GFF4924	0.10	-0.5
4,916,143	+		GFF4924	0.14	-0.5
4,916,143	+		GFF4924	0.14	-2.3
4,916,144	+		GFF4924	0.14	-1.0
4,916,144	+		GFF4924	0.14	-1.6
4,916,160	+		GFF4924	0.16	-0.8
4,916,165	+		GFF4924	0.16	-2.3
4,916,168	-		GFF4924	0.17	+0.1
4,916,168	-		GFF4924	0.17	-0.6
4,916,168	-		GFF4924	0.17	-2.0
4,916,168	-		GFF4924	0.17	+0.5
4,916,204	-		GFF4924	0.21	-2.9
4,916,213	-		GFF4924	0.22	+0.1
4,916,227	+		GFF4924	0.23	+0.8
4,916,233	+		GFF4924	0.24	-2.5
4,916,235	-		GFF4924	0.24	+1.3
4,916,256	-		GFF4924	0.27	-0.5
4,916,258	-		GFF4924	0.27	+0.9
4,916,272	+		GFF4924	0.28	-1.3
4,916,309	+		GFF4924	0.33	-2.3
4,916,309	+		GFF4924	0.33	+0.3
4,916,316	+		GFF4924	0.33	-2.7
4,916,316	+		GFF4924	0.33	-0.8
4,916,317	-		GFF4924	0.33	+1.3
4,916,324	+		GFF4924	0.34	-2.0
4,916,337	-		GFF4924	0.36	-1.2
4,916,355	+		GFF4924	0.38	+0.6
4,916,363	-		GFF4924	0.39	+1.0
4,916,376	-		GFF4924	0.40	-0.4
4,916,378	+		GFF4924	0.40	-2.4
4,916,379	-		GFF4924	0.40	-0.6
4,916,380	+		GFF4924	0.41	-3.6
4,916,380	+		GFF4924	0.41	-1.8
4,916,380	+		GFF4924	0.41	+2.0
4,916,380	+		GFF4924	0.41	+0.1
4,916,409	-		GFF4924	0.44	-0.9
4,916,428	+		GFF4924	0.46	-1.3
4,916,428	-		GFF4924	0.46	-1.1
4,916,428	-		GFF4924	0.46	+0.6
4,916,428	-		GFF4924	0.46	-0.5
4,916,436	+		GFF4924	0.47	+0.7
4,916,470	+		GFF4924	0.51	-0.3
4,916,488	+		GFF4924	0.53	+0.2
4,916,503	+		GFF4924	0.55	-0.6
4,916,503	+		GFF4924	0.55	+0.4
4,916,530	+		GFF4924	0.58	-2.8
4,916,546	+		GFF4924	0.59	-1.6
4,916,546	+		GFF4924	0.59	-0.3
4,916,546	+		GFF4924	0.59	-0.0
4,916,546	+		GFF4924	0.59	+0.1
4,916,546	+		GFF4924	0.59	-0.3
4,916,546	+		GFF4924	0.59	-0.8
4,916,554	-		GFF4924	0.60	-1.3
4,916,554	-		GFF4924	0.60	-1.2
4,916,554	-		GFF4924	0.60	-0.4
4,916,554	-		GFF4924	0.60	-0.1
4,916,554	-		GFF4924	0.60	+0.4
4,916,554	-		GFF4924	0.60	-2.7
4,916,554	-		GFF4924	0.60	-1.4
4,916,554	-		GFF4924	0.60	+0.4
4,916,554	-		GFF4924	0.60	-1.7
4,916,554	-		GFF4924	0.60	-0.5
4,916,562	-		GFF4924	0.61	+1.0
4,916,572	+		GFF4924	0.62	-0.8
4,916,581	-		GFF4924	0.63	-1.8
4,916,589	+		GFF4924	0.64	-0.8
4,916,622	+		GFF4924	0.68	-2.3
4,916,622	+		GFF4924	0.68	-2.2
4,916,622	+		GFF4924	0.68	-0.3
4,916,622	+		GFF4924	0.68	-1.7
4,916,627	+		GFF4924	0.69	-1.8
4,916,627	+		GFF4924	0.69	-0.8
4,916,627	+		GFF4924	0.69	-0.1
4,916,627	+		GFF4924	0.69	+0.4
4,916,630	-		GFF4924	0.69	-2.5
4,916,630	-		GFF4924	0.69	-1.9
4,916,630	-		GFF4924	0.69	-0.4
4,916,630	-		GFF4924	0.69	-1.3
4,916,630	-		GFF4924	0.69	-0.0
4,916,632	+		GFF4924	0.69	-0.9
4,916,635	-		GFF4924	0.70	-0.1
4,916,635	-		GFF4924	0.70	-2.9
4,916,635	-		GFF4924	0.70	-0.4
4,916,635	-		GFF4924	0.70	-0.3
4,916,645	+		GFF4924	0.71	+0.1
4,916,661	+		GFF4924	0.72	+0.1
4,916,661	+		GFF4924	0.72	-0.1
4,916,661	+		GFF4924	0.72	+0.9
4,916,661	+		GFF4924	0.72	-1.2
4,916,661	+		GFF4924	0.72	-0.3
4,916,661	+		GFF4924	0.72	-0.5
4,916,661	+		GFF4924	0.72	-0.3
4,916,661	+		GFF4924	0.72	+0.5
4,916,661	+		GFF4924	0.72	-1.7
4,916,669	-		GFF4924	0.73	+0.3
4,916,669	-		GFF4924	0.73	-0.7
4,916,669	-		GFF4924	0.73	-0.7
4,916,669	-		GFF4924	0.73	+1.0
4,916,669	-		GFF4924	0.73	-0.8
4,916,669	-		GFF4924	0.73	-1.2
4,916,669	-		GFF4924	0.73	-1.1
4,916,669	-		GFF4924	0.73	-0.7
4,916,669	-		GFF4924	0.73	-0.7
4,916,669	-		GFF4924	0.73	+0.6
4,916,669	-		GFF4924	0.73	-0.9
4,916,669	-		GFF4924	0.73	-1.9
4,916,669	-		GFF4924	0.73	-2.9
4,916,669	-		GFF4924	0.73	-0.1
4,916,669	-		GFF4924	0.73	-0.8
4,916,669	-		GFF4924	0.73	-1.2
4,916,693	+		GFF4924	0.76	-3.1
4,916,717	+		GFF4924	0.79	-0.3
4,916,730	+		GFF4924	0.80	-0.6
4,916,734	+		GFF4924	0.81	-0.3
4,916,736	-		GFF4924	0.81	+0.1
4,916,738	-		GFF4924	0.81	+0.9
4,916,738	-		GFF4924	0.81	+0.0
4,916,757	+		GFF4924	0.83	-0.3
4,916,762	+		GFF4924	0.84	-1.0
4,916,768	+		GFF4924	0.85	+0.3
4,916,775	+		GFF4924	0.85	-0.5
4,916,776	+		GFF4924	0.85	-1.3
4,916,776	-		GFF4924	0.85	+0.3
4,916,797	+		GFF4924	0.88	-0.0
4,916,803	-		GFF4924	0.89	-0.5
4,916,807	+		GFF4924	0.89	+0.1
4,916,827	+				-1.4
4,916,832	+				-0.1
4,916,835	-				-0.8
4,916,835	-				+1.4
4,916,840	-				-1.0
4,916,842	+				+0.9
4,916,871	+				+0.7
4,916,879	-				-1.3
4,916,885	-				-1.6
4,916,896	-				+0.2
4,916,906	-				-2.7
4,916,906	-				-0.8
4,916,906	-				+0.5
4,916,908	-				-0.3
4,916,931	+				-0.8
4,916,931	+				-2.6
4,916,934	+				-0.3
4,916,939	-				+0.1
4,916,939	-				-0.7
4,916,942	-				+0.7
4,916,942	-				+0.6
4,916,944	-				-0.7
4,916,952	-				-0.7
4,916,952	-				-4.0
4,916,953	-				+0.3
4,916,992	+				-0.1
4,917,048	+				+0.3
4,917,048	-				-0.7
4,917,075	+		GFF4925	0.13	-0.8
4,917,075	+		GFF4925	0.13	-0.1
4,917,077	+		GFF4925	0.13	+0.2
4,917,083	-		GFF4925	0.13	-2.7
4,917,085	-		GFF4925	0.14	-1.9
4,917,106	+		GFF4925	0.16	+0.5
4,917,106	+		GFF4925	0.16	+0.4
4,917,114	-		GFF4925	0.17	-2.5
4,917,118	-		GFF4925	0.17	-0.7
4,917,139	+		GFF4925	0.19	-0.4
4,917,171	+		GFF4925	0.22	-1.9
4,917,197	-		GFF4925	0.25	-0.1
4,917,204	+		GFF4925	0.25	+0.9
4,917,210	-		GFF4925	0.26	-1.2
4,917,210	-		GFF4925	0.26	-1.7
4,917,210	-		GFF4925	0.26	+0.7
4,917,212	-		GFF4925	0.26	+0.7
4,917,221	+		GFF4925	0.27	-0.3
4,917,227	-		GFF4925	0.28	-1.2
4,917,234	-		GFF4925	0.28	-1.9
4,917,236	+		GFF4925	0.29	-2.4
4,917,236	+		GFF4925	0.29	+0.1
4,917,236	+		GFF4925	0.29	-0.5
4,917,236	+		GFF4925	0.29	-1.5
4,917,236	+		GFF4925	0.29	-1.1
4,917,236	+		GFF4925	0.29	-1.8
4,917,236	+		GFF4925	0.29	-0.7
4,917,236	+		GFF4925	0.29	-0.6
4,917,236	+		GFF4925	0.29	+0.9
4,917,236	+		GFF4925	0.29	-0.1
4,917,244	-		GFF4925	0.29	-0.9
4,917,244	-		GFF4925	0.29	-1.6
4,917,244	-		GFF4925	0.29	-0.0
4,917,244	-		GFF4925	0.29	-0.5
4,917,244	-		GFF4925	0.29	+0.2
4,917,244	-		GFF4925	0.29	-0.4
4,917,244	-		GFF4925	0.29	-3.3
4,917,246	-		GFF4925	0.30	-1.2
4,917,258	-		GFF4925	0.31	-1.9
4,917,267	+		GFF4925	0.32	+0.2
4,917,270	-		GFF4925	0.32	-1.0
4,917,284	+		GFF4925	0.33	+0.7
4,917,285	+		GFF4925	0.34	-0.0
4,917,307	+		GFF4925	0.36	-0.6
4,917,307	+		GFF4925	0.36	-1.0
4,917,307	+		GFF4925	0.36	-1.4
4,917,310	-		GFF4925	0.36	-0.8
4,917,315	-		GFF4925	0.37	-0.8
4,917,315	-		GFF4925	0.37	-2.3
4,917,315	-		GFF4925	0.37	+0.5
4,917,315	-		GFF4925	0.37	-1.3
4,917,315	-		GFF4925	0.37	-1.9
4,917,355	-		GFF4925	0.40	-0.6
4,917,373	+		GFF4925	0.42	-0.8
4,917,376	-		GFF4925	0.43	-1.7
4,917,391	-		GFF4925	0.44	-0.4
4,917,407	+		GFF4925	0.46	-2.5
4,917,409	+		GFF4925	0.46	+0.2
4,917,409	+		GFF4925	0.46	-1.3
4,917,409	+		GFF4925	0.46	-0.6
4,917,410	+		GFF4925	0.46	-1.8
4,917,417	-		GFF4925	0.47	-0.0
4,917,417	-		GFF4925	0.47	-0.7
4,917,417	-		GFF4925	0.47	-0.9
4,917,417	-		GFF4925	0.47	-0.3
4,917,417	-		GFF4925	0.47	-0.2
4,917,418	-		GFF4925	0.47	-0.2
4,917,418	-		GFF4925	0.47	-1.3
4,917,418	-		GFF4925	0.47	-0.0
4,917,418	-		GFF4925	0.47	-0.0
4,917,426	+		GFF4925	0.48	-0.3
4,917,426	+		GFF4925	0.48	-0.5
4,917,426	+		GFF4925	0.48	-1.6
4,917,431	+		GFF4925	0.48	-0.8
4,917,431	+		GFF4925	0.48	-0.1
4,917,434	-		GFF4925	0.48	+0.2
4,917,434	-		GFF4925	0.48	-0.1
4,917,434	-		GFF4925	0.48	+0.4
4,917,434	-		GFF4925	0.48	-1.4
4,917,439	-		GFF4925	0.49	-0.3
4,917,439	-		GFF4925	0.49	-0.8
4,917,439	-		GFF4925	0.49	-1.1
4,917,441	+		GFF4925	0.49	+0.5
4,917,449	-		GFF4925	0.50	+0.8
4,917,464	+		GFF4925	0.51	-0.0
4,917,472	-		GFF4925	0.52	-0.6
4,917,472	-		GFF4925	0.52	-0.1
4,917,508	+		GFF4925	0.56	+0.4
4,917,545	-		GFF4925	0.59	+0.3
4,917,553	-		GFF4925	0.60	+0.0
4,917,591	-		GFF4925	0.64	+0.1
4,917,620	-		GFF4925	0.67	-0.8
4,917,622	+		GFF4925	0.67	-1.9
4,917,629	-		GFF4925	0.68	+1.0
4,917,671	+		GFF4925	0.72	-1.4
4,917,702	+		GFF4925	0.75	-1.1
4,917,702	+		GFF4925	0.75	-0.2
4,917,702	-		GFF4925	0.75	-0.6
4,917,710	-		GFF4925	0.76	-0.1
4,917,710	-		GFF4925	0.76	-0.7
4,917,710	-		GFF4925	0.76	-0.4
4,917,727	-		GFF4925	0.78	-2.5
4,917,736	+		GFF4925	0.78	-0.7
4,917,736	+		GFF4925	0.78	-1.6
4,917,771	-		GFF4925	0.82	+0.7
4,917,773	+		GFF4925	0.82	-1.7
4,917,778	+		GFF4925	0.83	-0.8
4,917,779	-		GFF4925	0.83	-1.3
4,917,779	-		GFF4925	0.83	-0.0
4,917,779	-		GFF4925	0.83	+0.9
4,917,781	-		GFF4925	0.83	-0.3
4,917,786	-		GFF4925	0.83	-0.9
4,917,797	+		GFF4925	0.84	+0.1
4,917,826	+		GFF4925	0.87	+0.7
4,917,832	-		GFF4925	0.88	-0.4
4,917,834	-		GFF4925	0.88	-0.1
4,917,836	+		GFF4925	0.88	-0.9
4,917,836	+		GFF4925	0.88	+0.4
4,917,844	-		GFF4925	0.89	-1.0
4,917,844	-		GFF4925	0.89	-0.1
4,917,844	-		GFF4925	0.89	-0.2
4,917,844	-		GFF4925	0.89	+0.3
4,917,844	-		GFF4925	0.89	-0.9
4,917,855	-				-0.6
4,917,875	-				+0.1
4,917,892	-				-2.7
4,917,902	+				+0.2
4,917,907	+				-2.2
4,917,912	+				-2.5
4,917,912	+				-1.0
4,917,912	+				+0.0
4,917,914	+				-1.7
4,917,914	+				+0.4
4,917,914	+				-1.9
4,917,917	-				-1.1
4,917,922	-				-2.8
4,917,933	+				-0.6
4,917,941	-				-0.3
4,917,941	-				-1.6
4,917,970	+				+0.4
4,918,022	-				-1.5
4,918,022	-				-0.7
4,918,030	+				-1.0
4,918,043	-				-0.7
4,918,043	-				-1.8
4,918,043	-				-0.5
4,918,053	-				-1.5
4,918,060	-		GFF4926	0.10	+0.4
4,918,127	+		GFF4926	0.17	-2.1
4,918,163	+		GFF4926	0.21	-1.7
4,918,163	+		GFF4926	0.21	+0.3
4,918,163	+		GFF4926	0.21	-0.5
4,918,169	+		GFF4926	0.21	-1.2
4,918,171	-		GFF4926	0.22	-0.3
4,918,171	-		GFF4926	0.22	-1.5
4,918,171	-		GFF4926	0.22	-2.5
4,918,173	+		GFF4926	0.22	-1.7
4,918,179	+		GFF4926	0.22	-0.5
4,918,187	-		GFF4926	0.23	-2.0
4,918,188	-		GFF4926	0.23	-0.0
4,918,189	+		GFF4926	0.23	-2.7
4,918,189	+		GFF4926	0.23	-1.2
4,918,189	+		GFF4926	0.23	-0.8
4,918,189	+		GFF4926	0.23	-0.4
4,918,189	+		GFF4926	0.23	+0.1
4,918,189	+		GFF4926	0.23	-1.9
4,918,189	+		GFF4926	0.23	+0.5
4,918,189	+		GFF4926	0.23	+0.2
4,918,189	+		GFF4926	0.23	-1.3
4,918,189	+		GFF4926	0.23	-2.5
4,918,189	+		GFF4926	0.23	+1.2
4,918,189	+		GFF4926	0.23	-1.1
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4,918,197	-		GFF4926	0.24	-0.7
4,918,197	-		GFF4926	0.24	-2.2
4,918,197	-		GFF4926	0.24	-1.1
4,918,197	-		GFF4926	0.24	-1.9
4,918,197	-		GFF4926	0.24	-1.0
4,918,197	-		GFF4926	0.24	-0.3
4,918,197	-		GFF4926	0.24	+0.6
4,918,197	-		GFF4926	0.24	-0.6
4,918,210	-		GFF4926	0.26	-0.3
4,918,210	-		GFF4926	0.26	-2.3
4,918,215	-		GFF4926	0.26	-0.6
4,918,218	+		GFF4926	0.26	+0.1
4,918,218	+		GFF4926	0.26	+0.3
4,918,222	+		GFF4926	0.27	-1.4
4,918,225	-		GFF4926	0.27	+0.5
4,918,230	-		GFF4926	0.28	+1.0
4,918,241	-		GFF4926	0.29	-0.6
4,918,250	+		GFF4926	0.30	+0.9
4,918,255	+		GFF4926	0.30	+0.2
4,918,263	-		GFF4926	0.31	-0.3
4,918,265	+		GFF4926	0.31	+1.0
4,918,274	+		GFF4926	0.32	-1.5
4,918,282	-		GFF4926	0.33	-1.7
4,918,282	-		GFF4926	0.33	-0.1
4,918,282	-		GFF4926	0.33	-1.0
4,918,282	-		GFF4926	0.33	-0.3
4,918,308	+		GFF4926	0.36	+0.1
4,918,309	-		GFF4926	0.36	-0.4
4,918,311	+		GFF4926	0.36	-2.5
4,918,313	+		GFF4926	0.36	-2.5
4,918,313	+		GFF4926	0.36	-1.7
4,918,313	+		GFF4926	0.36	-2.6
4,918,319	-		GFF4926	0.37	-0.8
4,918,319	-		GFF4926	0.37	-2.4
4,918,321	-		GFF4926	0.37	+1.0
4,918,326	+		GFF4926	0.38	-1.7
4,918,326	+		GFF4926	0.38	+0.1
4,918,326	-		GFF4926	0.38	-0.6
4,918,329	-		GFF4926	0.38	-1.0
4,918,351	-		GFF4926	0.40	-1.3
4,918,351	-		GFF4926	0.40	-0.9
4,918,356	+		GFF4926	0.41	-0.8
4,918,366	+		GFF4926	0.42	-0.7
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4,918,374	-		GFF4926	0.43	-0.0
4,918,374	-		GFF4926	0.43	-0.9
4,918,374	-		GFF4926	0.43	-0.4
4,918,374	-		GFF4926	0.43	-0.4
4,918,374	-		GFF4926	0.43	-1.5
4,918,387	+		GFF4926	0.44	-2.2
4,918,393	+		GFF4926	0.44	+0.2
4,918,393	-		GFF4926	0.44	-0.9
4,918,393	-		GFF4926	0.44	-1.7
4,918,404	+		GFF4926	0.46	-1.0
4,918,422	-		GFF4926	0.47	-1.0
4,918,435	-		GFF4926	0.49	-0.6
4,918,469	+		GFF4926	0.52	-3.4
4,918,490	-		GFF4926	0.54	-1.7
4,918,505	+		GFF4926	0.56	+0.2
4,918,505	+		GFF4926	0.56	-0.6
4,918,513	-		GFF4926	0.57	-1.1
4,918,515	+		GFF4926	0.57	-2.2
4,918,523	+		GFF4926	0.58	-1.7
4,918,546	-		GFF4926	0.60	-1.3
4,918,548	-		GFF4926	0.60	-2.1
4,918,579	+		GFF4926	0.64	+0.0
4,918,579	+		GFF4926	0.64	-1.0
4,918,579	+		GFF4926	0.64	+0.3
4,918,584	+		GFF4926	0.64	+0.3
4,918,584	+		GFF4926	0.64	-1.3
4,918,587	-		GFF4926	0.64	-1.2
4,918,587	-		GFF4926	0.64	-2.0
4,918,589	+		GFF4926	0.65	-2.1
4,918,592	-		GFF4926	0.65	-0.2
4,918,592	-		GFF4926	0.65	-2.2
4,918,592	-		GFF4926	0.65	-0.7
4,918,595	-		GFF4926	0.65	+0.2
4,918,597	-		GFF4926	0.66	-0.3
4,918,597	-		GFF4926	0.66	-0.6
4,918,610	-		GFF4926	0.67	-0.0
4,918,611	+		GFF4926	0.67	-0.8
4,918,611	+		GFF4926	0.67	-1.6
4,918,611	+		GFF4926	0.67	+0.2
4,918,611	+		GFF4926	0.67	-1.2
4,918,611	+		GFF4926	0.67	-0.4
4,918,613	+		GFF4926	0.67	+0.7
4,918,619	-		GFF4926	0.68	+0.0
4,918,619	-		GFF4926	0.68	-0.8
4,918,621	+		GFF4926	0.68	-0.7
4,918,621	+		GFF4926	0.68	+0.6
4,918,621	-		GFF4926	0.68	-0.4
4,918,629	-		GFF4926	0.69	-1.2
4,918,700	+		GFF4926	0.76	-0.5
4,918,708	-		GFF4926	0.77	-1.1
4,918,713	-		GFF4926	0.78	-0.9
4,918,721	-		GFF4926	0.78	-2.0
4,918,740	-		GFF4926	0.80	-0.0
4,918,785	-		GFF4926	0.85	+0.4
4,918,826	+		GFF4926	0.89	+0.3
4,918,826	+		GFF4926	0.89	-1.2
4,918,855	-				-2.0
4,918,855	-				+0.3
4,918,862	+				-2.9
4,918,870	-				-0.9
4,918,888	-				-2.5
4,918,897	+				-1.6
4,918,897	+				-0.7
4,918,905	-				-0.1
4,918,944	+				-1.1
4,918,946	+				-0.6
4,918,952	-				-1.6