Strain Fitness in Sphingobium sp. HT1-2 around GFF487

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF485 and GFF486 are separated by 196 nucleotidesGFF486 and GFF487 are separated by 184 nucleotidesGFF487 and GFF488 are separated by 104 nucleotidesGFF488 and GFF489 are separated by 165 nucleotidesGFF489 and GFF490 are separated by 123 nucleotides GFF485 - hypothetical protein, at 486,205 to 486,795 GFF485 GFF486 - LSU ribosomal protein L36p @ LSU ribosomal protein L36p, zinc-independent, at 486,992 to 487,117 GFF486 GFF487 - Pyruvate kinase (EC 2.7.1.40), at 487,302 to 488,774 GFF487 GFF488 - protein of unknown function DUF1244, at 488,879 to 489,178 GFF488 GFF489 - hypothetical protein, at 489,344 to 489,586 GFF489 GFF490 - UPF0145 protein YbjQ, at 489,710 to 490,036 GFF490 Position (kb) 487 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1at 486.321 kb on - strand, within GFF485at 486.325 kb on + strand, within GFF485at 486.333 kb on + strand, within GFF485at 486.333 kb on - strand, within GFF485at 486.376 kb on - strand, within GFF485at 486.393 kb on + strand, within GFF485at 486.398 kb on + strand, within GFF485at 486.398 kb on + strand, within GFF485at 486.399 kb on + strand, within GFF485at 486.406 kb on - strand, within GFF485at 486.406 kb on - strand, within GFF485at 486.407 kb on - strand, within GFF485at 486.417 kb on + strand, within GFF485at 486.418 kb on + strand, within GFF485at 486.425 kb on - strand, within GFF485at 486.441 kb on + strand, within GFF485at 486.449 kb on - strand, within GFF485at 486.449 kb on - strand, within GFF485at 486.455 kb on + strand, within GFF485at 486.455 kb on + strand, within GFF485at 486.455 kb on + strand, within GFF485at 486.455 kb on + strand, within GFF485at 486.455 kb on + strand, within GFF485at 486.460 kb on + strand, within GFF485at 486.460 kb on + strand, within GFF485at 486.463 kb on - strand, within GFF485at 486.463 kb on - strand, within GFF485at 486.463 kb on - strand, within GFF485at 486.468 kb on - strand, within GFF485at 486.468 kb on - strand, within GFF485at 486.468 kb on - strand, within GFF485at 486.468 kb on - strand, within GFF485at 486.468 kb on - strand, within GFF485at 486.468 kb on - strand, within GFF485at 486.468 kb on - strand, within GFF485at 486.482 kb on + strand, within GFF485at 486.485 kb on - strand, within GFF485at 486.517 kb on - strand, within GFF485at 486.517 kb on - strand, within GFF485at 486.517 kb on - strand, within GFF485at 486.519 kb on + strand, within GFF485at 486.527 kb on - strand, within GFF485at 486.536 kb on + strand, within GFF485at 486.541 kb on + strand, within GFF485at 486.544 kb on - strand, within GFF485at 486.546 kb on + strand, within GFF485at 486.554 kb on - strand, within GFF485at 486.559 kb on + strand, within GFF485at 486.576 kb on + strand, within GFF485at 486.580 kb on + strand, within GFF485at 486.583 kb on - strand, within GFF485at 486.588 kb on - strand, within GFF485at 486.588 kb on - strand, within GFF485at 486.588 kb on - strand, within GFF485at 486.588 kb on - strand, within GFF485at 486.603 kb on - strand, within GFF485at 486.603 kb on - strand, within GFF485at 486.685 kb on + strand, within GFF485at 486.690 kb on + strand, within GFF485at 486.690 kb on + strand, within GFF485at 486.690 kb on + strand, within GFF485at 486.690 kb on + strand, within GFF485at 486.693 kb on - strand, within GFF485at 486.693 kb on - strand, within GFF485at 486.693 kb on - strand, within GFF485at 486.693 kb on - strand, within GFF485at 486.693 kb on - strand, within GFF485at 486.698 kb on - strand, within GFF485at 486.698 kb on - strand, within GFF485at 486.698 kb on - strand, within GFF485at 486.698 kb on - strand, within GFF485at 486.698 kb on - strand, within GFF485at 486.698 kb on - strand, within GFF485at 486.698 kb on - strand, within GFF485at 486.698 kb on - strand, within GFF485at 486.719 kb on + strand, within GFF485at 486.720 kb on + strand, within GFF485at 486.727 kb on + strand, within GFF485at 486.727 kb on - strand, within GFF485at 486.749 kb on + strandat 486.749 kb on + strandat 486.749 kb on + strandat 486.749 kb on + strandat 486.749 kb on + strandat 486.753 kb on - strandat 486.759 kb on + strandat 486.759 kb on + strandat 486.759 kb on + strandat 486.759 kb on + strandat 486.759 kb on + strandat 486.759 kb on + strandat 486.765 kb on + strandat 486.765 kb on + strandat 486.765 kb on + strandat 486.767 kb on - strandat 486.767 kb on - strandat 486.773 kb on - strandat 486.773 kb on - strandat 486.773 kb on - strandat 486.780 kb on - strandat 486.786 kb on + strandat 486.794 kb on - strandat 486.799 kb on + strandat 486.808 kb on + strandat 486.813 kb on + strandat 486.818 kb on + strandat 486.818 kb on + strandat 486.820 kb on + strandat 486.820 kb on + strandat 486.826 kb on - strandat 486.826 kb on - strandat 486.826 kb on - strandat 486.828 kb on - strandat 486.828 kb on - strandat 486.828 kb on - strandat 486.828 kb on - strandat 486.855 kb on - strandat 486.862 kb on + strandat 486.862 kb on + strandat 486.863 kb on + strandat 486.863 kb on + strandat 486.871 kb on - strandat 486.871 kb on - strandat 486.884 kb on + strandat 486.892 kb on - strandat 486.892 kb on - strandat 486.892 kb on - strandat 486.911 kb on - strandat 486.921 kb on - strandat 486.921 kb on - strandat 487.112 kb on + strandat 487.129 kb on + strandat 487.152 kb on - strandat 487.169 kb on - strandat 487.170 kb on - strandat 487.308 kb on - strandat 487.322 kb on - strandat 487.334 kb on + strandat 487.334 kb on + strandat 487.342 kb on - strandat 487.342 kb on - strandat 487.342 kb on - strandat 487.342 kb on - strandat 487.351 kb on - strandat 487.412 kb on + strandat 487.449 kb on + strandat 487.449 kb on + strandat 487.525 kb on + strand, within GFF487at 487.530 kb on + strand, within GFF487at 487.530 kb on + strand, within GFF487at 487.533 kb on - strand, within GFF487at 487.533 kb on - strand, within GFF487at 487.533 kb on - strand, within GFF487at 487.533 kb on - strand, within GFF487at 487.533 kb on - strand, within GFF487at 487.552 kb on + strand, within GFF487at 487.552 kb on + strand, within GFF487at 487.560 kb on - strand, within GFF487at 487.560 kb on - strand, within GFF487at 487.621 kb on - strand, within GFF487at 487.626 kb on - strand, within GFF487at 487.641 kb on + strand, within GFF487at 487.682 kb on - strand, within GFF487at 487.684 kb on + strand, within GFF487at 487.684 kb on + strand, within GFF487at 487.791 kb on + strand, within GFF487at 487.799 kb on + strand, within GFF487at 487.800 kb on + strand, within GFF487at 487.881 kb on + strand, within GFF487at 487.889 kb on - strand, within GFF487at 487.907 kb on - strand, within GFF487at 488.064 kb on - strand, within GFF487at 488.078 kb on + strand, within GFF487at 488.086 kb on - strand, within GFF487at 488.095 kb on + strand, within GFF487at 488.103 kb on - strand, within GFF487at 488.103 kb on - strand, within GFF487at 488.103 kb on - strand, within GFF487at 488.110 kb on + strand, within GFF487at 488.134 kb on + strand, within GFF487at 488.177 kb on + strand, within GFF487at 488.221 kb on + strand, within GFF487at 488.231 kb on - strand, within GFF487at 488.306 kb on + strand, within GFF487at 488.306 kb on + strand, within GFF487at 488.339 kb on + strand, within GFF487at 488.429 kb on - strand, within GFF487at 488.489 kb on - strand, within GFF487at 488.530 kb on + strand, within GFF487at 488.540 kb on + strand, within GFF487at 488.540 kb on + strand, within GFF487at 488.548 kb on - strand, within GFF487at 488.566 kb on + strand, within GFF487at 488.636 kb on - strandat 488.636 kb on - strandat 488.641 kb on + strandat 488.669 kb on - strandat 488.694 kb on + strandat 488.699 kb on + strandat 488.702 kb on - strandat 488.727 kb on - strandat 488.744 kb on - strandat 488.745 kb on - strandat 488.787 kb on - strandat 488.799 kb on + strandat 488.806 kb on - strandat 488.842 kb on + strandat 488.850 kb on - strandat 488.859 kb on - strandat 488.888 kb on + strandat 488.888 kb on + strandat 488.888 kb on + strandat 488.888 kb on + strandat 488.888 kb on + strandat 488.894 kb on - strandat 488.896 kb on - strandat 488.896 kb on - strandat 488.896 kb on - strandat 488.896 kb on - strandat 488.896 kb on - strandat 488.904 kb on - strandat 488.956 kb on - strand, within GFF488at 488.980 kb on - strand, within GFF488at 489.004 kb on + strand, within GFF488at 489.013 kb on - strand, within GFF488at 489.014 kb on - strand, within GFF488at 489.026 kb on - strand, within GFF488at 489.038 kb on + strand, within GFF488at 489.038 kb on + strand, within GFF488at 489.046 kb on - strand, within GFF488at 489.050 kb on + strand, within GFF488at 489.066 kb on - strand, within GFF488at 489.074 kb on + strand, within GFF488at 489.082 kb on - strand, within GFF488at 489.082 kb on - strand, within GFF488at 489.109 kb on + strand, within GFF488at 489.109 kb on + strand, within GFF488at 489.117 kb on - strand, within GFF488at 489.117 kb on - strand, within GFF488at 489.117 kb on - strand, within GFF488at 489.117 kb on - strand, within GFF488at 489.117 kb on - strand, within GFF488at 489.122 kb on + strand, within GFF488at 489.122 kb on + strand, within GFF488at 489.122 kb on + strand, within GFF488at 489.140 kb on + strand, within GFF488at 489.140 kb on + strand, within GFF488at 489.147 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.148 kb on - strand, within GFF488at 489.158 kb on - strandat 489.171 kb on + strandat 489.172 kb on + strandat 489.172 kb on + strandat 489.175 kb on - strandat 489.179 kb on + strandat 489.187 kb on - strandat 489.187 kb on - strandat 489.187 kb on - strandat 489.197 kb on - strandat 489.202 kb on - strandat 489.207 kb on - strandat 489.237 kb on + strandat 489.257 kb on + strandat 489.267 kb on + strandat 489.272 kb on + strandat 489.576 kb on + strandat 489.576 kb on + strandat 489.581 kb on + strandat 489.581 kb on + strandat 489.581 kb on + strandat 489.589 kb on - strandat 489.589 kb on - strandat 489.589 kb on - strandat 489.589 kb on - strandat 489.589 kb on - strandat 489.603 kb on + strandat 489.610 kb on - strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.613 kb on + strandat 489.620 kb on + strandat 489.620 kb on + strandat 489.621 kb on + strandat 489.621 kb on - strandat 489.621 kb on - strandat 489.621 kb on - strandat 489.629 kb on - strandat 489.637 kb on + strandat 489.643 kb on - strandat 489.648 kb on + strandat 489.649 kb on + strandat 489.654 kb on + strandat 489.659 kb on + strandat 489.667 kb on - strandat 489.667 kb on - strandat 489.677 kb on - strandat 489.706 kb on + strandat 489.717 kb on + strandat 489.725 kb on - strandat 489.739 kb on - strandat 489.743 kb on + strand, within GFF490at 489.763 kb on + strand, within GFF490at 489.763 kb on + strand, within GFF490at 489.770 kb on - strand, within GFF490at 489.771 kb on - strand, within GFF490at 489.771 kb on - strand, within GFF490

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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486,321 - GFF485 0.20 +0.2
486,325 + GFF485 0.20 -1.0
486,333 + GFF485 0.22 +1.0
486,333 - GFF485 0.22 -1.8
486,376 - GFF485 0.29 +0.6
486,393 + GFF485 0.32 -1.8
486,398 + GFF485 0.33 -0.9
486,398 + GFF485 0.33 -2.3
486,399 + GFF485 0.33 +0.5
486,406 - GFF485 0.34 -1.3
486,406 - GFF485 0.34 -3.1
486,407 - GFF485 0.34 -0.9
486,417 + GFF485 0.36 -0.9
486,418 + GFF485 0.36 +0.4
486,425 - GFF485 0.37 -0.8
486,441 + GFF485 0.40 +0.2
486,449 - GFF485 0.41 -0.8
486,449 - GFF485 0.41 -0.0
486,455 + GFF485 0.42 -0.4
486,455 + GFF485 0.42 +0.5
486,455 + GFF485 0.42 -0.5
486,455 + GFF485 0.42 -0.2
486,455 + GFF485 0.42 +0.6
486,460 + GFF485 0.43 -1.1
486,460 + GFF485 0.43 -0.4
486,463 - GFF485 0.44 +0.2
486,463 - GFF485 0.44 +1.0
486,463 - GFF485 0.44 -0.5
486,468 - GFF485 0.45 -0.1
486,468 - GFF485 0.45 +0.1
486,468 - GFF485 0.45 +0.5
486,468 - GFF485 0.45 +1.2
486,468 - GFF485 0.45 -0.4
486,468 - GFF485 0.45 +0.8
486,468 - GFF485 0.45 -0.7
486,482 + GFF485 0.47 -2.0
486,485 - GFF485 0.47 -0.5
486,517 - GFF485 0.53 +0.3
486,517 - GFF485 0.53 -0.8
486,517 - GFF485 0.53 +0.6
486,519 + GFF485 0.53 -0.5
486,527 - GFF485 0.54 +0.6
486,536 + GFF485 0.56 -0.9
486,541 + GFF485 0.57 -1.4
486,544 - GFF485 0.57 -0.2
486,546 + GFF485 0.58 -0.9
486,554 - GFF485 0.59 -1.8
486,559 + GFF485 0.60 +0.3
486,576 + GFF485 0.63 +0.6
486,580 + GFF485 0.63 +0.0
486,583 - GFF485 0.64 -0.0
486,588 - GFF485 0.65 -0.4
486,588 - GFF485 0.65 +0.5
486,588 - GFF485 0.65 +0.9
486,588 - GFF485 0.65 +0.7
486,603 - GFF485 0.67 +0.3
486,603 - GFF485 0.67 -0.7
486,685 + GFF485 0.81 +1.0
486,690 + GFF485 0.82 -0.9
486,690 + GFF485 0.82 +0.1
486,690 + GFF485 0.82 -1.3
486,690 + GFF485 0.82 -0.3
486,693 - GFF485 0.83 -1.0
486,693 - GFF485 0.83 +1.5
486,693 - GFF485 0.83 -0.8
486,693 - GFF485 0.83 +0.3
486,693 - GFF485 0.83 +0.3
486,698 - GFF485 0.83 -1.6
486,698 - GFF485 0.83 -0.6
486,698 - GFF485 0.83 -0.3
486,698 - GFF485 0.83 -1.2
486,698 - GFF485 0.83 -1.6
486,698 - GFF485 0.83 -0.4
486,698 - GFF485 0.83 +0.9
486,698 - GFF485 0.83 -2.0
486,719 + GFF485 0.87 -0.1
486,720 + GFF485 0.87 +0.8
486,727 + GFF485 0.88 -1.0
486,727 - GFF485 0.88 -0.3
486,749 + +0.9
486,749 + -0.4
486,749 + +0.2
486,749 + +0.2
486,749 + -0.4
486,753 - +0.5
486,759 + -0.3
486,759 + +1.2
486,759 + -1.7
486,759 + +1.6
486,759 + +0.3
486,759 + -1.4
486,765 + -0.6
486,765 + +0.4
486,765 + -0.6
486,767 - -0.9
486,767 - +0.1
486,773 - -2.2
486,773 - -1.5
486,773 - +0.5
486,780 - -1.2
486,786 + +0.9
486,794 - +1.1
486,799 + -0.2
486,808 + +0.5
486,813 + +0.4
486,818 + -0.7
486,818 + +0.5
486,820 + -0.3
486,820 + +0.9
486,826 - -0.7
486,826 - -0.6
486,826 - -1.3
486,828 - -1.3
486,828 - -0.0
486,828 - +0.3
486,828 - +0.0
486,855 - -0.0
486,862 + -0.2
486,862 + -0.5
486,863 + -0.3
486,863 + -0.6
486,871 - +0.1
486,871 - -0.1
486,884 + +1.0
486,892 - -0.3
486,892 - -0.1
486,892 - -1.6
486,911 - +1.1
486,921 - -0.6
486,921 - -0.2
487,112 + -1.0
487,129 + +0.3
487,152 - -1.5
487,169 - -0.5
487,170 - -0.4
487,308 - +1.5
487,322 - -2.1
487,334 + +0.4
487,334 + -2.0
487,342 - +0.7
487,342 - -1.3
487,342 - -2.0
487,342 - -2.1
487,351 - -1.1
487,412 + -1.4
487,449 + -0.4
487,449 + +0.5
487,525 + GFF487 0.15 -0.3
487,530 + GFF487 0.15 -1.3
487,530 + GFF487 0.15 +1.1
487,533 - GFF487 0.16 -0.7
487,533 - GFF487 0.16 +0.9
487,533 - GFF487 0.16 -1.3
487,533 - GFF487 0.16 +0.3
487,533 - GFF487 0.16 -0.0
487,552 + GFF487 0.17 -1.4
487,552 + GFF487 0.17 -0.4
487,560 - GFF487 0.18 -0.5
487,560 - GFF487 0.18 -0.0
487,621 - GFF487 0.22 -1.3
487,626 - GFF487 0.22 -0.4
487,641 + GFF487 0.23 -0.9
487,682 - GFF487 0.26 +1.0
487,684 + GFF487 0.26 -1.2
487,684 + GFF487 0.26 -1.3
487,791 + GFF487 0.33 +0.3
487,799 + GFF487 0.34 -0.4
487,800 + GFF487 0.34 +1.7
487,881 + GFF487 0.39 +0.9
487,889 - GFF487 0.40 -1.6
487,907 - GFF487 0.41 -0.3
488,064 - GFF487 0.52 -1.4
488,078 + GFF487 0.53 +0.7
488,086 - GFF487 0.53 -1.7
488,095 + GFF487 0.54 -1.3
488,103 - GFF487 0.54 +0.3
488,103 - GFF487 0.54 +0.5
488,103 - GFF487 0.54 -0.7
488,110 + GFF487 0.55 +0.6
488,134 + GFF487 0.56 +1.3
488,177 + GFF487 0.59 -0.4
488,221 + GFF487 0.62 +0.8
488,231 - GFF487 0.63 +0.1
488,306 + GFF487 0.68 +0.5
488,306 + GFF487 0.68 -0.3
488,339 + GFF487 0.70 -0.8
488,429 - GFF487 0.77 -0.3
488,489 - GFF487 0.81 -1.4
488,530 + GFF487 0.83 -0.0
488,540 + GFF487 0.84 -0.3
488,540 + GFF487 0.84 +0.2
488,548 - GFF487 0.85 -0.6
488,566 + GFF487 0.86 +0.3
488,636 - -1.2
488,636 - -1.4
488,641 + -1.9
488,669 - -0.4
488,694 + -0.6
488,699 + -0.1
488,702 - +1.4
488,727 - -1.2
488,744 - +0.1
488,745 - +0.8
488,787 - -0.4
488,799 + -0.2
488,806 - -0.6
488,842 + -2.2
488,850 - -0.0
488,859 - -0.8
488,888 + -1.5
488,888 + -1.9
488,888 + +0.0
488,888 + -1.2
488,888 + -1.2
488,894 - +0.5
488,896 - +0.8
488,896 - +0.2
488,896 - +0.2
488,896 - -1.0
488,896 - -2.7
488,904 - -0.2
488,956 - GFF488 0.26 -1.0
488,980 - GFF488 0.34 -0.1
489,004 + GFF488 0.42 +0.1
489,013 - GFF488 0.45 -0.1
489,014 - GFF488 0.45 +1.0
489,026 - GFF488 0.49 +0.6
489,038 + GFF488 0.53 -1.9
489,038 + GFF488 0.53 -0.9
489,046 - GFF488 0.56 -1.1
489,050 + GFF488 0.57 -1.2
489,066 - GFF488 0.62 -1.2
489,074 + GFF488 0.65 +0.2
489,082 - GFF488 0.68 -1.8
489,082 - GFF488 0.68 +0.9
489,109 + GFF488 0.77 +0.6
489,109 + GFF488 0.77 +0.2
489,117 - GFF488 0.79 -0.4
489,117 - GFF488 0.79 -2.0
489,117 - GFF488 0.79 +0.3
489,117 - GFF488 0.79 -0.3
489,117 - GFF488 0.79 -0.8
489,122 + GFF488 0.81 -1.7
489,122 + GFF488 0.81 -0.1
489,122 + GFF488 0.81 +0.2
489,140 + GFF488 0.87 -1.4
489,140 + GFF488 0.87 -1.2
489,147 - GFF488 0.89 -0.1
489,148 - GFF488 0.90 -3.0
489,148 - GFF488 0.90 -0.5
489,148 - GFF488 0.90 -1.1
489,148 - GFF488 0.90 +0.2
489,148 - GFF488 0.90 -0.0
489,148 - GFF488 0.90 -0.2
489,158 - -0.9
489,171 + -2.6
489,172 + -0.0
489,172 + +1.3
489,175 - +0.2
489,179 + -0.9
489,187 - -0.9
489,187 - -0.0
489,187 - +0.3
489,197 - -1.0
489,202 - -0.6
489,207 - -0.2
489,237 + +1.3
489,257 + +0.4
489,267 + -1.8
489,272 + +0.1
489,576 + -0.5
489,576 + -2.2
489,581 + -1.6
489,581 + -0.9
489,581 + -0.5
489,589 - -1.4
489,589 - -0.4
489,589 - +1.0
489,589 - +0.7
489,589 - -0.5
489,603 + -1.3
489,610 - -0.5
489,613 + -0.6
489,613 + -0.5
489,613 + -0.8
489,613 + -1.4
489,613 + -2.1
489,613 + -0.2
489,613 + +0.5
489,613 + +1.5
489,613 + -0.7
489,613 + -0.2
489,620 + -0.0
489,620 + -0.3
489,621 + -1.5
489,621 - -1.6
489,621 - +0.4
489,621 - +0.6
489,629 - +0.2
489,637 + -1.4
489,643 - -1.2
489,648 + +0.2
489,649 + -0.5
489,654 + -1.0
489,659 + +0.4
489,667 - -1.0
489,667 - +0.6
489,677 - -1.2
489,706 + -0.6
489,717 + -1.2
489,725 - -0.1
489,739 - -1.8
489,743 + GFF490 0.10 +1.7
489,763 + GFF490 0.16 +0.4
489,763 + GFF490 0.16 +0.2
489,770 - GFF490 0.18 +0.0
489,771 - GFF490 0.19 +0.5
489,771 - GFF490 0.19 -0.6

Or see this region's nucleotide sequence