Strain Fitness in Sphingobium sp. HT1-2 around GFF4864

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,850,958	-				-0.6
4,850,960	+				-1.1
4,850,960	+				+1.1
4,850,960	+				+1.2
4,850,960	+				-0.1
4,850,960	+				+0.8
4,850,960	+				-1.9
4,850,960	+				+0.4
4,850,968	-				+0.8
4,850,968	-				+1.7
4,851,004	+				-0.3
4,851,006	+				-1.7
4,851,006	+				+0.0
4,851,006	+				-2.0
4,851,006	+				-0.1
4,851,006	+				-1.1
4,851,012	-				+0.9
4,851,014	-				+1.0
4,851,022	+				-0.0
4,851,022	+				-0.4
4,851,022	+				-0.6
4,851,022	+				-0.9
4,851,022	+				-0.0
4,851,030	-				-0.7
4,851,030	-				-1.2
4,851,036	+				-1.6
4,851,043	+				-0.3
4,851,046	-				-1.0
4,851,051	-				-0.3
4,851,068	-				+0.1
4,851,072	-				-0.6
4,851,072	-				-1.7
4,851,072	-				-0.5
4,851,085	-				-1.9
4,851,087	+				+0.4
4,851,095	-				+0.2
4,851,106	+				-1.5
4,851,106	+				-0.8
4,851,114	-				-0.4
4,851,114	-				+1.0
4,851,142	-				+0.7
4,851,153	+				+0.5
4,851,160	+				+0.9
4,851,160	+				+1.3
4,851,160	+				-0.5
4,851,160	+				-0.9
4,851,160	+				+0.1
4,851,162	+				-0.5
4,851,168	-				-0.1
4,851,168	-				+1.3
4,851,168	-				+0.2
4,851,168	-				+1.2
4,851,168	-				-0.0
4,851,173	-				-0.7
4,851,173	-				-0.2
4,851,182	+				-1.2
4,851,182	+				+0.1
4,851,182	+				+0.3
4,851,182	+				-0.1
4,851,190	-				-0.3
4,851,190	-				+1.2
4,851,202	+				-0.3
4,851,202	+				-2.3
4,851,203	+				+0.3
4,851,210	-				-0.2
4,851,210	-				-1.4
4,851,210	-				+1.0
4,851,211	-				+0.9
4,851,249	+				-0.5
4,851,249	+				+0.3
4,851,249	+				-0.9
4,851,257	-				-0.1
4,851,259	+				-0.5
4,851,261	-				+0.1
4,851,266	-				-1.1
4,851,268	-				+0.5
4,851,273	-				-1.7
4,851,286	-				+0.8
4,851,305	+				-0.4
4,851,312	-				+0.7
4,851,320	+				+0.2
4,851,343	+				-0.8
4,851,351	-				+0.9
4,851,389	-				-0.7
4,851,391	+				+0.2
4,851,391	+				-0.7
4,851,393	+				-0.7
4,851,393	+				-1.2
4,851,393	+				-0.3
4,851,396	-				-0.7
4,851,396	-				+0.7
4,851,426	+				-0.9
4,851,426	+				-1.9
4,851,434	-				-1.5
4,851,439	-				-0.7
4,851,442	-				+1.6
4,851,444	-				-0.2
4,851,444	-				-2.3
4,851,498	+		GFF4863	0.16	-1.0
4,851,510	+		GFF4863	0.18	-2.1
4,851,510	+		GFF4863	0.18	-0.8
4,851,518	-		GFF4863	0.19	-0.0
4,851,518	-		GFF4863	0.19	+1.2
4,851,518	-		GFF4863	0.19	+0.5
4,851,518	-		GFF4863	0.19	-0.1
4,851,518	-		GFF4863	0.19	+0.5
4,851,518	-		GFF4863	0.19	+1.1
4,851,518	-		GFF4863	0.19	+0.4
4,851,518	-		GFF4863	0.19	+0.2
4,851,535	+		GFF4863	0.23	-2.0
4,851,535	+		GFF4863	0.23	-1.8
4,851,535	+		GFF4863	0.23	-1.0
4,851,543	-		GFF4863	0.24	+0.3
4,851,543	-		GFF4863	0.24	-0.8
4,851,545	-		GFF4863	0.24	+0.3
4,851,554	+		GFF4863	0.26	-2.1
4,851,562	-		GFF4863	0.28	-0.1
4,851,589	+		GFF4863	0.32	+1.3
4,851,589	+		GFF4863	0.32	-0.5
4,851,589	+		GFF4863	0.32	-0.5
4,851,589	+		GFF4863	0.32	+1.1
4,851,589	+		GFF4863	0.32	-1.8
4,851,589	+		GFF4863	0.32	+1.0
4,851,589	+		GFF4863	0.32	+0.9
4,851,589	+		GFF4863	0.32	-2.1
4,851,589	+		GFF4863	0.32	+0.2
4,851,589	+		GFF4863	0.32	-0.3
4,851,589	+		GFF4863	0.32	-0.8
4,851,589	+		GFF4863	0.32	+0.6
4,851,589	+		GFF4863	0.32	+0.6
4,851,589	+		GFF4863	0.32	-2.3
4,851,589	+		GFF4863	0.32	-1.6
4,851,597	-		GFF4863	0.34	-1.8
4,851,597	-		GFF4863	0.34	+0.6
4,851,597	-		GFF4863	0.34	-0.0
4,851,597	-		GFF4863	0.34	+0.3
4,851,597	-		GFF4863	0.34	-0.4
4,851,597	-		GFF4863	0.34	+0.9
4,851,597	-		GFF4863	0.34	+0.5
4,851,597	-		GFF4863	0.34	+1.2
4,851,597	-		GFF4863	0.34	-1.5
4,851,597	-		GFF4863	0.34	-0.9
4,851,597	-		GFF4863	0.34	-2.5
4,851,597	-		GFF4863	0.34	+0.4
4,851,597	-		GFF4863	0.34	+0.6
4,851,601	+		GFF4863	0.35	+1.1
4,851,624	+		GFF4863	0.39	+0.8
4,851,652	-		GFF4863	0.44	+0.5
4,851,652	-		GFF4863	0.44	+0.3
4,851,715	-		GFF4863	0.55	-1.7
4,851,715	-		GFF4863	0.55	+1.0
4,851,723	+		GFF4863	0.57	+1.5
4,851,724	+		GFF4863	0.57	-1.1
4,851,724	+		GFF4863	0.57	-1.5
4,851,724	+		GFF4863	0.57	+0.3
4,851,724	+		GFF4863	0.57	+1.2
4,851,724	+		GFF4863	0.57	-1.4
4,851,724	+		GFF4863	0.57	-1.8
4,851,724	+		GFF4863	0.57	+0.8
4,851,724	+		GFF4863	0.57	-2.3
4,851,724	+		GFF4863	0.57	+0.5
4,851,724	+		GFF4863	0.57	-0.6
4,851,724	+		GFF4863	0.57	+1.3
4,851,731	-		GFF4863	0.58	+0.6
4,851,732	-		GFF4863	0.58	+1.0
4,851,732	-		GFF4863	0.58	+0.6
4,851,732	-		GFF4863	0.58	-0.8
4,851,732	-		GFF4863	0.58	+0.4
4,851,732	-		GFF4863	0.58	-0.4
4,851,732	-		GFF4863	0.58	+1.5
4,851,732	-		GFF4863	0.58	+0.6
4,851,732	-		GFF4863	0.58	-0.4
4,851,732	-		GFF4863	0.58	+1.1
4,851,752	+		GFF4863	0.62	-0.4
4,851,777	+		GFF4863	0.67	+0.9
4,851,777	+		GFF4863	0.67	-1.6
4,851,798	-		GFF4863	0.70	-0.3
4,851,799	+		GFF4863	0.71	+1.5
4,851,809	+		GFF4863	0.72	+0.6
4,851,809	+		GFF4863	0.72	+0.7
4,851,819	+		GFF4863	0.74	+0.8
4,851,835	+		GFF4863	0.77	+0.3
4,851,835	+		GFF4863	0.77	+1.1
4,851,836	+		GFF4863	0.77	-0.9
4,851,837	-		GFF4863	0.78	-0.4
4,851,853	+		GFF4863	0.81	-0.1
4,851,861	-		GFF4863	0.82	+0.0
4,851,861	-		GFF4863	0.82	-0.5
4,851,875	+		GFF4863	0.85	+1.9
4,851,875	+		GFF4863	0.85	+0.3
4,851,877	-		GFF4863	0.85	-1.6
4,851,877	-		GFF4863	0.85	-0.1
4,851,883	-		GFF4863	0.86	-0.5
4,851,884	-		GFF4863	0.86	+0.9
4,851,889	+		GFF4863	0.87	+1.6
4,851,895	+		GFF4863	0.88	-0.8
4,851,895	+		GFF4863	0.88	-2.0
4,851,903	-		GFF4863	0.90	+0.6
4,851,939	+				+0.7
4,851,939	+				+1.1
4,851,939	+				-1.9
4,851,944	+				-1.4
4,851,947	-				-2.7
4,851,962	+				+1.7
4,851,970	+				+0.5
4,851,970	-				+1.2
4,851,980	+				-0.7
4,851,980	+				-0.4
4,851,980	+				-1.5
4,851,992	+				+1.1
4,852,002	+				+0.4
4,852,004	+				+0.5
4,852,004	+				-1.4
4,852,009	+				+0.3
4,852,009	+				-0.2
4,852,010	-				+0.1
4,852,010	-				+0.6
4,852,014	+		GFF4864	0.10	-2.2
4,852,017	-		GFF4864	0.11	-0.5
4,852,017	-		GFF4864	0.11	-1.9
4,852,017	-		GFF4864	0.11	-0.9
4,852,017	-		GFF4864	0.11	-2.2
4,852,017	-		GFF4864	0.11	+1.2
4,852,017	-		GFF4864	0.11	+0.8
4,852,017	-		GFF4864	0.11	+0.5
4,852,017	-		GFF4864	0.11	-0.3
4,852,022	-		GFF4864	0.11	-0.1
4,852,022	-		GFF4864	0.11	-0.2
4,852,022	-		GFF4864	0.11	+0.3
4,852,022	-		GFF4864	0.11	-1.1
4,852,047	+		GFF4864	0.16	+1.2
4,852,065	-		GFF4864	0.19	-0.2
4,852,110	-		GFF4864	0.27	-1.0
4,852,117	+		GFF4864	0.28	+0.0
4,852,117	+		GFF4864	0.28	+0.4
4,852,117	+		GFF4864	0.28	+0.8
4,852,125	-		GFF4864	0.29	+0.6
4,852,125	-		GFF4864	0.29	+0.2
4,852,135	-		GFF4864	0.31	-0.1
4,852,139	-		GFF4864	0.32	-0.3
4,852,196	+		GFF4864	0.42	-0.0
4,852,205	-		GFF4864	0.43	+0.1
4,852,213	+		GFF4864	0.45	-0.5
4,852,213	-		GFF4864	0.45	-0.3
4,852,228	-		GFF4864	0.47	+1.7
4,852,232	+		GFF4864	0.48	-0.6
4,852,236	-		GFF4864	0.49	-1.1
4,852,241	-		GFF4864	0.49	+0.5
4,852,243	+		GFF4864	0.50	-2.1
4,852,243	+		GFF4864	0.50	+1.1
4,852,243	+		GFF4864	0.50	-2.2
4,852,243	+		GFF4864	0.50	-0.3
4,852,251	-		GFF4864	0.51	+0.1
4,852,251	-		GFF4864	0.51	+0.8
4,852,255	+		GFF4864	0.52	-0.7
4,852,256	-		GFF4864	0.52	+0.5
4,852,256	-		GFF4864	0.52	+0.6
4,852,274	+		GFF4864	0.55	+0.7
4,852,274	-		GFF4864	0.55	+0.4
4,852,282	-		GFF4864	0.57	+0.0
4,852,307	+		GFF4864	0.61	+0.1
4,852,307	+		GFF4864	0.61	-0.4
4,852,307	+		GFF4864	0.61	+1.3
4,852,315	-		GFF4864	0.62	-0.0
4,852,315	-		GFF4864	0.62	-0.0
4,852,315	-		GFF4864	0.62	+0.1
4,852,331	+		GFF4864	0.65	+0.4
4,852,343	+		GFF4864	0.67	+0.6
4,852,352	+		GFF4864	0.69	+0.7
4,852,357	+		GFF4864	0.70	-0.1
4,852,360	-		GFF4864	0.70	+1.3
4,852,360	-		GFF4864	0.70	+1.6
4,852,360	-		GFF4864	0.70	+0.4
4,852,360	-		GFF4864	0.70	+0.9
4,852,360	-		GFF4864	0.70	-0.9
4,852,366	+		GFF4864	0.71	+0.0
4,852,374	-		GFF4864	0.73	-1.8
4,852,374	-		GFF4864	0.73	+1.0
4,852,374	-		GFF4864	0.73	+0.5
4,852,397	-		GFF4864	0.77	+0.5
4,852,400	+		GFF4864	0.77	-1.2
4,852,405	+		GFF4864	0.78	+0.6
4,852,405	-		GFF4864	0.78	+0.2
4,852,416	+		GFF4864	0.80	+1.7
4,852,417	-		GFF4864	0.80	-1.6
4,852,422	+		GFF4864	0.81	+1.3
4,852,424	-		GFF4864	0.81	+0.5
4,852,424	-		GFF4864	0.81	+0.8
4,852,430	+		GFF4864	0.82	+0.2
4,852,430	-		GFF4864	0.82	-1.9
4,852,430	-		GFF4864	0.82	-1.7
4,852,437	+		GFF4864	0.84	-1.4
4,852,438	-		GFF4864	0.84	+0.6
4,852,445	-		GFF4864	0.85	+1.0
4,852,452	+		GFF4864	0.86	+0.4
4,852,460	-		GFF4864	0.88	+0.2
4,852,460	-		GFF4864	0.88	-0.4
4,852,469	+		GFF4864	0.89	+0.2
4,852,469	+		GFF4864	0.89	-1.5
4,852,477	-				+0.6
4,852,495	-				+0.2
4,852,495	-				+1.3
4,852,497	+				+0.5
4,852,505	-				+0.3
4,852,532	+				-1.8
4,852,532	+				-0.0
4,852,533	+				+0.3
4,852,533	-				+0.4
4,852,535	+				+0.3
4,852,535	+				-0.3
4,852,540	-				+1.1
4,852,543	-				+0.1
4,852,556	+				+0.9
4,852,566	+				-0.1
4,852,570	+				+0.2
4,852,570	+				-0.6
4,852,573	-				+1.1
4,852,574	-				+0.2
4,852,574	-				-0.7
4,852,574	-				+1.2
4,852,583	+				-1.6
4,852,607	-		GFF4865	0.13	+0.5
4,852,616	-		GFF4865	0.15	+0.8
4,852,622	+		GFF4865	0.16	-0.4
4,852,622	+		GFF4865	0.16	-0.5
4,852,622	+		GFF4865	0.16	+0.7
4,852,622	+		GFF4865	0.16	-0.4
4,852,622	+		GFF4865	0.16	+0.0
4,852,622	+		GFF4865	0.16	-0.4
4,852,624	+		GFF4865	0.16	+0.7
4,852,624	+		GFF4865	0.16	-0.4
4,852,624	+		GFF4865	0.16	-0.7
4,852,624	+		GFF4865	0.16	+1.0
4,852,624	+		GFF4865	0.16	+0.3
4,852,624	+		GFF4865	0.16	-0.4
4,852,624	+		GFF4865	0.16	+0.3
4,852,628	-		GFF4865	0.17	+0.5
4,852,630	-		GFF4865	0.17	-0.8
4,852,630	-		GFF4865	0.17	+2.4
4,852,630	-		GFF4865	0.17	+0.9
4,852,630	-		GFF4865	0.17	-0.4
4,852,630	-		GFF4865	0.17	+0.4
4,852,630	-		GFF4865	0.17	-0.3
4,852,630	-		GFF4865	0.17	-0.1
4,852,632	-		GFF4865	0.17	+0.4
4,852,632	-		GFF4865	0.17	+0.6
4,852,632	-		GFF4865	0.17	+0.5
4,852,632	-		GFF4865	0.17	+0.6
4,852,639	+		GFF4865	0.18	+0.3
4,852,647	-		GFF4865	0.20	-2.4
4,852,679	+		GFF4865	0.25	-0.8
4,852,679	+		GFF4865	0.25	-0.1
4,852,687	-		GFF4865	0.26	+1.0
4,852,687	-		GFF4865	0.26	+0.5
4,852,689	+		GFF4865	0.27	+0.6
4,852,698	-		GFF4865	0.28	+0.6
4,852,704	+		GFF4865	0.29	+0.6
4,852,704	+		GFF4865	0.29	-0.6
4,852,704	+		GFF4865	0.29	+0.4
4,852,704	+		GFF4865	0.29	-0.1
4,852,704	+		GFF4865	0.29	+0.7
4,852,704	+		GFF4865	0.29	-1.6
4,852,704	+		GFF4865	0.29	+0.7
4,852,704	+		GFF4865	0.29	-0.6
4,852,704	+		GFF4865	0.29	-2.0
4,852,704	+		GFF4865	0.29	+0.3
4,852,704	+		GFF4865	0.29	+1.2
4,852,704	+		GFF4865	0.29	-0.7
4,852,704	+		GFF4865	0.29	+1.9
4,852,704	+		GFF4865	0.29	+1.3
4,852,704	+		GFF4865	0.29	-0.2
4,852,704	+		GFF4865	0.29	-1.0
4,852,708	-		GFF4865	0.30	-0.1
4,852,712	-		GFF4865	0.30	-0.8
4,852,712	-		GFF4865	0.30	-1.7
4,852,712	-		GFF4865	0.30	-0.0
4,852,712	-		GFF4865	0.30	+0.1
4,852,712	-		GFF4865	0.30	-0.0
4,852,712	-		GFF4865	0.30	-0.6
4,852,712	-		GFF4865	0.30	+1.6
4,852,712	-		GFF4865	0.30	+0.4
4,852,719	+		GFF4865	0.32	-0.0
4,852,728	+		GFF4865	0.33	-0.7
4,852,731	-		GFF4865	0.33	+0.7
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