Strain Fitness in Sphingobium sp. HT1-2 around GFF4799

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,792,784	+				-1.5
4,792,792	-				-0.3
4,792,792	-				-3.0
4,792,796	-				-0.3
4,792,818	-				-2.0
4,792,822	+				-1.0
4,792,875	-				-3.1
4,792,875	-				-2.1
4,792,943	-				-0.9
4,792,953	-				-3.2
4,792,953	-				-0.6
4,792,959	+				-1.0
4,792,959	+				-1.5
4,792,961	+				-0.9
4,792,961	+				+0.1
4,792,967	+				-1.9
4,792,967	-				-1.8
4,792,967	-				+0.1
4,792,972	+				+0.1
4,792,993	+				-2.5
4,792,993	+				-1.1
4,793,001	-				-0.8
4,793,006	+				-1.3
4,793,007	+				-0.2
4,793,014	-				+0.7
4,793,014	-				-1.8
4,793,042	+				-1.5
4,793,042	+				-1.0
4,793,042	+				-0.9
4,793,052	+				-3.7
4,793,052	+				-2.7
4,793,060	-				-0.3
4,793,060	-				-0.9
4,793,090	+				-2.1
4,793,091	+				-1.5
4,793,099	-				-0.3
4,793,113	+		GFF4798	0.11	-2.1
4,793,121	-		GFF4798	0.12	-3.7
4,793,129	+		GFF4798	0.14	-0.3
4,793,137	-		GFF4798	0.15	-0.5
4,793,147	+		GFF4798	0.17	-0.4
4,793,149	+		GFF4798	0.17	-1.1
4,793,179	+		GFF4798	0.23	-1.5
4,793,205	+		GFF4798	0.27	-1.1
4,793,238	+		GFF4798	0.33	+0.2
4,793,247	-		GFF4798	0.35	+0.7
4,793,247	-		GFF4798	0.35	-1.9
4,793,254	+		GFF4798	0.36	-0.5
4,793,289	-		GFF4798	0.43	-0.5
4,793,307	+		GFF4798	0.46	+0.7
4,793,307	+		GFF4798	0.46	-0.2
4,793,307	+		GFF4798	0.46	-1.0
4,793,315	-		GFF4798	0.47	-1.8
4,793,315	-		GFF4798	0.47	-1.5
4,793,315	-		GFF4798	0.47	-0.5
4,793,333	+		GFF4798	0.50	+0.0
4,793,338	+		GFF4798	0.51	-0.1
4,793,382	-		GFF4798	0.59	-0.5
4,793,387	-		GFF4798	0.60	-2.1
4,793,391	-		GFF4798	0.61	+0.2
4,793,408	-		GFF4798	0.64	-0.4
4,793,408	-		GFF4798	0.64	-0.3
4,793,408	-		GFF4798	0.64	-1.1
4,793,433	+		GFF4798	0.68	+0.3
4,793,433	+		GFF4798	0.68	-2.4
4,793,433	+		GFF4798	0.68	-0.5
4,793,433	+		GFF4798	0.68	+0.4
4,793,433	+		GFF4798	0.68	+0.2
4,793,433	+		GFF4798	0.68	+0.2
4,793,434	+		GFF4798	0.69	-0.1
4,793,438	+		GFF4798	0.69	-1.6
4,793,439	+		GFF4798	0.70	-0.6
4,793,441	-		GFF4798	0.70	-0.3
4,793,441	-		GFF4798	0.70	-2.1
4,793,441	-		GFF4798	0.70	-0.7
4,793,442	-		GFF4798	0.70	-1.3
4,793,450	+		GFF4798	0.72	+0.3
4,793,453	+		GFF4798	0.72	-1.3
4,793,465	+		GFF4798	0.74	-1.5
4,793,466	-		GFF4798	0.74	-1.6
4,793,476	+		GFF4798	0.76	-1.7
4,793,485	-		GFF4798	0.78	-0.6
4,793,495	-		GFF4798	0.80	-1.1
4,793,497	+		GFF4798	0.80	+0.9
4,793,497	+		GFF4798	0.80	-2.0
4,793,497	+		GFF4798	0.80	-0.5
4,793,497	+		GFF4798	0.80	+0.6
4,793,497	+		GFF4798	0.80	-0.6
4,793,500	-		GFF4798	0.81	+0.7
4,793,505	-		GFF4798	0.81	+0.3
4,793,505	-		GFF4798	0.81	-0.7
4,793,505	-		GFF4798	0.81	+0.4
4,793,505	-		GFF4798	0.81	-0.0
4,793,505	-		GFF4798	0.81	-0.4
4,793,510	-		GFF4798	0.82	-0.1
4,793,512	+		GFF4798	0.83	-1.1
4,793,517	+		GFF4798	0.84	-1.5
4,793,525	-		GFF4798	0.85	+0.7
4,793,544	+		GFF4798	0.88	-1.0
4,793,552	-				-1.8
4,793,628	+				+0.2
4,793,652	+				+0.3
4,793,652	+				-0.2
4,793,652	+				-0.4
4,793,660	-				-0.2
4,793,660	-				+0.7
4,793,660	-				+0.1
4,793,660	-				+0.4
4,793,662	-				+0.3
4,793,673	+				-0.4
4,793,675	+				+0.9
4,793,675	+				-1.4
4,793,693	+				-0.5
4,793,693	+				+0.6
4,793,693	+				-0.8
4,793,693	+				-0.7
4,793,693	+				-1.2
4,793,693	+				-0.2
4,793,693	+				+0.1
4,793,693	+				-1.4
4,793,693	+				-1.8
4,793,693	+				+0.1
4,793,693	+				-0.7
4,793,701	-				+0.7
4,793,701	-				-0.7
4,793,701	-				-0.2
4,793,701	-				-0.8
4,793,701	-				-1.5
4,793,701	-				-1.6
4,793,701	-				-0.4
4,793,701	-				-0.6
4,793,701	-				-0.2
4,793,701	-				+0.3
4,793,701	-				-2.0
4,793,701	-				-0.1
4,793,701	-				-1.1
4,793,701	-				-2.3
4,793,701	-				-1.7
4,793,701	-				-1.8
4,793,701	-				-0.6
4,793,701	-				-0.2
4,793,709	+				+0.6
4,793,722	-				-1.3
4,793,725	+				-1.2
4,793,781	+				-0.3
4,793,781	+				-0.8
4,793,781	+				-3.5
4,793,786	+				-1.1
4,793,786	+				-2.4
4,793,786	+				-0.9
4,793,786	+				-0.4
4,793,786	+				-1.3
4,793,786	+				-1.5
4,793,786	+				-0.9
4,793,786	+				-3.2
4,793,786	+				-1.5
4,793,789	-				-0.7
4,793,789	-				-0.3
4,793,789	-				-0.5
4,793,794	-				-1.7
4,793,794	-				-1.0
4,793,794	-				-0.7
4,793,794	-				-0.4
4,793,794	-				-1.8
4,793,803	+				-0.1
4,793,803	-				-0.7
4,793,804	-				+0.0
4,793,811	+				-2.8
4,793,811	+				-1.5
4,793,829	+				-0.0
4,793,835	+				-0.3
4,793,855	+				-0.7
4,793,857	+				-0.4
4,793,871	+				-1.2
4,793,914	+		GFF4799	0.14	-0.1
4,793,914	+		GFF4799	0.14	-0.8
4,793,924	+		GFF4799	0.15	-2.2
4,793,924	+		GFF4799	0.15	+0.1
4,793,929	+		GFF4799	0.16	-1.7
4,794,004	+		GFF4799	0.24	-0.1
4,794,004	+		GFF4799	0.24	-1.4
4,794,012	-		GFF4799	0.25	-1.7
4,794,047	+		GFF4799	0.29	+0.0
4,794,080	+		GFF4799	0.32	-0.3
4,794,081	+		GFF4799	0.33	-0.1
4,794,089	-		GFF4799	0.33	-0.7
4,794,125	+		GFF4799	0.37	-1.5
4,794,141	+		GFF4799	0.39	+1.1
4,794,171	-		GFF4799	0.42	-0.8
4,794,178	-		GFF4799	0.43	-0.7
4,794,230	-		GFF4799	0.49	-0.9
4,794,232	+		GFF4799	0.49	-1.3
4,794,240	+		GFF4799	0.50	-2.1
4,794,242	+		GFF4799	0.50	-1.1
4,794,270	+		GFF4799	0.53	-0.9
4,794,277	+		GFF4799	0.54	-0.9
4,794,278	-		GFF4799	0.54	+0.3
4,794,285	+		GFF4799	0.55	-1.1
4,794,296	+		GFF4799	0.56	-3.0
4,794,296	+		GFF4799	0.56	-0.6
4,794,296	+		GFF4799	0.56	-0.9
4,794,296	+		GFF4799	0.56	+0.2
4,794,304	-		GFF4799	0.57	-1.2
4,794,354	+		GFF4799	0.62	+0.3
4,794,354	+		GFF4799	0.62	-0.7
4,794,391	+		GFF4799	0.66	+0.1
4,794,401	+		GFF4799	0.68	-0.6
4,794,418	+		GFF4799	0.69	-0.2
4,794,418	+		GFF4799	0.69	-1.7
4,794,418	+		GFF4799	0.69	-0.4
4,794,418	+		GFF4799	0.69	+0.8
4,794,426	-		GFF4799	0.70	+0.3
4,794,433	+		GFF4799	0.71	-1.3
4,794,434	+		GFF4799	0.71	-1.6
4,794,434	+		GFF4799	0.71	-1.1
4,794,441	+		GFF4799	0.72	-2.3
4,794,460	+		GFF4799	0.74	+0.6
4,794,467	+		GFF4799	0.75	-1.7
4,794,467	+		GFF4799	0.75	+0.2
4,794,468	-		GFF4799	0.75	-2.1
4,794,508	+		GFF4799	0.79	-0.1
4,794,508	+		GFF4799	0.79	+1.0
4,794,516	-		GFF4799	0.80	-1.7
4,794,516	-		GFF4799	0.80	-2.7
4,794,550	-		GFF4799	0.84	-3.3
4,794,554	+		GFF4799	0.84	-0.9
4,794,554	+		GFF4799	0.84	-1.1
4,794,558	+		GFF4799	0.85	-0.3
4,794,559	+		GFF4799	0.85	-0.1
4,794,577	+		GFF4799	0.87	+0.2
4,794,577	+		GFF4799	0.87	-0.6
4,794,577	+		GFF4799	0.87	-1.4
4,794,585	-		GFF4799	0.88	-2.7
4,794,585	-		GFF4799	0.88	-0.2
4,794,585	-		GFF4799	0.88	-1.2
4,794,597	+		GFF4799	0.89	-0.7
4,794,597	+		GFF4799	0.89	-2.3
4,794,607	+				-1.1
4,794,619	-				-2.2
4,794,634	+				-0.9
4,794,634	+				+0.2
4,794,634	+				+0.2
4,794,634	+				+0.4
4,794,636	+				-2.0
4,794,643	-				-2.3
4,794,686	+				-1.7
4,794,686	+				-0.1
4,794,694	-				-1.9
4,794,701	+				-1.7
4,794,701	+				-0.1
4,794,701	+				-0.1
4,794,706	+				-0.1
4,794,706	+				+0.9
4,794,706	+				-0.2
4,794,706	+				-1.2
4,794,706	+				-0.4
4,794,706	+				-2.5
4,794,706	+				-0.5
4,794,706	+				-2.1
4,794,706	+				-2.7
4,794,706	+				-0.2
4,794,706	+				-0.7
4,794,709	-				-0.8
4,794,709	-				-1.4
4,794,709	-				-1.7
4,794,709	-				-0.2
4,794,711	+				+0.2
4,794,712	-				-1.7
4,794,714	-				-0.6
4,794,714	-				-1.7
4,794,714	-				-2.7
4,794,714	-				-1.6
4,794,714	-				-1.9
4,794,714	-				-0.5
4,794,714	-				-0.1
4,794,714	-				-2.2
4,794,714	-				+1.1
4,794,734	-				-0.1
4,794,737	+				-1.2
4,794,745	-				-0.2
4,794,745	-				-0.5
4,794,751	+				-1.6
4,794,823	+				-0.5
4,794,829	+				-3.0
4,794,850	+				-0.3
4,794,850	+				+0.5
4,794,855	+				-1.7
4,794,868	-				-0.5
4,794,893	-				-1.3
4,794,984	+		GFF4800	0.32	-2.3
4,794,993	+		GFF4800	0.34	-3.4
4,795,001	-		GFF4800	0.37	-2.2
4,795,035	-		GFF4800	0.47	-0.9
4,795,101	-		GFF4800	0.66	-4.0
4,795,101	-		GFF4800	0.66	-3.3
4,795,182	+				-1.8
4,795,187	+				-1.4
4,795,187	+				-2.5
4,795,187	+				-2.0
4,795,226	-				-2.5
4,795,434	+				-1.3
4,795,494	-				-0.1
4,795,542	-				-0.8
4,795,544	-				-0.8
4,795,544	-				+0.3
4,795,567	-				-1.7
4,795,625	+				+0.6
4,795,625	+				-0.1
4,795,639	+				-0.2
4,795,647	-				-2.4
4,795,649	+				-1.7
4,795,649	+				-0.4
4,795,654	+				-0.4
4,795,662	-				+0.3
4,795,662	-				-1.9
4,795,662	-				-0.8