Strain Fitness in Sphingobium sp. HT1-2 around GFF4773

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4772 and GFF4773 are separated by 14 nucleotidesGFF4773 and GFF4774 are separated by 84 nucleotidesGFF4774 and GFF4775 are separated by 1 nucleotides GFF4772 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 4,767,894 to 4,768,901 GFF4772 GFF4773 - hypothetical protein, at 4,768,916 to 4,769,101 GFF4773 GFF4774 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 4,769,186 to 4,769,767 GFF4774 GFF4775 - 'Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)' transl_table=11, at 4,769,769 to 4,770,500 GFF4775 Position (kb) 4768 4769 4770Strain fitness (log2 ratio) -3 -2 -1 0 1at 4767.946 kb on + strandat 4767.946 kb on + strandat 4767.997 kb on + strand, within GFF4772at 4767.997 kb on + strand, within GFF4772at 4768.002 kb on + strand, within GFF4772at 4768.002 kb on + strand, within GFF4772at 4768.003 kb on - strand, within GFF4772at 4768.005 kb on - strand, within GFF4772at 4768.008 kb on + strand, within GFF4772at 4768.025 kb on + strand, within GFF4772at 4768.025 kb on + strand, within GFF4772at 4768.038 kb on - strand, within GFF4772at 4768.040 kb on - strand, within GFF4772at 4768.045 kb on + strand, within GFF4772at 4768.045 kb on + strand, within GFF4772at 4768.050 kb on - strand, within GFF4772at 4768.052 kb on + strand, within GFF4772at 4768.052 kb on + strand, within GFF4772at 4768.055 kb on - strand, within GFF4772at 4768.060 kb on - strand, within GFF4772at 4768.072 kb on - strand, within GFF4772at 4768.101 kb on - strand, within GFF4772at 4768.113 kb on - strand, within GFF4772at 4768.113 kb on - strand, within GFF4772at 4768.126 kb on + strand, within GFF4772at 4768.133 kb on + strand, within GFF4772at 4768.133 kb on + strand, within GFF4772at 4768.133 kb on + strand, within GFF4772at 4768.134 kb on - strand, within GFF4772at 4768.134 kb on - strand, within GFF4772at 4768.134 kb on - strand, within GFF4772at 4768.138 kb on + strand, within GFF4772at 4768.141 kb on - strand, within GFF4772at 4768.141 kb on - strand, within GFF4772at 4768.141 kb on - strand, within GFF4772at 4768.151 kb on - strand, within GFF4772at 4768.154 kb on + strand, within GFF4772at 4768.154 kb on + strand, within GFF4772at 4768.154 kb on + strand, within GFF4772at 4768.162 kb on - strand, within GFF4772at 4768.191 kb on - strand, within GFF4772at 4768.192 kb on + strand, within GFF4772at 4768.223 kb on + strand, within GFF4772at 4768.226 kb on - strand, within GFF4772at 4768.244 kb on + strand, within GFF4772at 4768.250 kb on - strand, within GFF4772at 4768.252 kb on - strand, within GFF4772at 4768.267 kb on + strand, within GFF4772at 4768.267 kb on + strand, within GFF4772at 4768.331 kb on - strand, within GFF4772at 4768.338 kb on - strand, within GFF4772at 4768.340 kb on + strand, within GFF4772at 4768.348 kb on + strand, within GFF4772at 4768.355 kb on + strand, within GFF4772at 4768.355 kb on + strand, within GFF4772at 4768.355 kb on + strand, within GFF4772at 4768.373 kb on - strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.384 kb on + strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.392 kb on - strand, within GFF4772at 4768.448 kb on + strand, within GFF4772at 4768.464 kb on - strand, within GFF4772at 4768.479 kb on + strand, within GFF4772at 4768.485 kb on - strand, within GFF4772at 4768.487 kb on - strand, within GFF4772at 4768.489 kb on + strand, within GFF4772at 4768.489 kb on + strand, within GFF4772at 4768.489 kb on + strand, within GFF4772at 4768.489 kb on + strand, within GFF4772at 4768.489 kb on - strand, within GFF4772at 4768.507 kb on - strand, within GFF4772at 4768.513 kb on - strand, within GFF4772at 4768.513 kb on - strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.529 kb on + strand, within GFF4772at 4768.537 kb on - strand, within GFF4772at 4768.537 kb on - strand, within GFF4772at 4768.594 kb on + strand, within GFF4772at 4768.597 kb on - strand, within GFF4772at 4768.597 kb on - strand, within GFF4772at 4768.598 kb on + strand, within GFF4772at 4768.619 kb on + strand, within GFF4772at 4768.619 kb on + strand, within GFF4772at 4768.635 kb on - strand, within GFF4772at 4768.654 kb on - strand, within GFF4772at 4768.712 kb on + strand, within GFF4772at 4768.712 kb on + strand, within GFF4772at 4768.737 kb on - strand, within GFF4772at 4768.737 kb on - strand, within GFF4772at 4768.782 kb on + strand, within GFF4772at 4768.790 kb on - strand, within GFF4772at 4768.794 kb on + strand, within GFF4772at 4768.810 kb on + strandat 4768.810 kb on + strandat 4768.867 kb on + strandat 4768.885 kb on - strandat 4768.893 kb on - strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.907 kb on + strandat 4768.911 kb on - strandat 4768.914 kb on + strandat 4768.914 kb on + strandat 4768.915 kb on + strandat 4768.915 kb on - strandat 4768.915 kb on - strandat 4768.915 kb on - strandat 4768.915 kb on - strandat 4768.920 kb on - strandat 4768.922 kb on - strandat 4768.922 kb on - strandat 4768.930 kb on - strandat 4768.969 kb on - strand, within GFF4773at 4768.969 kb on - strand, within GFF4773at 4768.969 kb on - strand, within GFF4773at 4768.969 kb on - strand, within GFF4773at 4768.988 kb on + strand, within GFF4773at 4769.022 kb on + strand, within GFF4773at 4769.022 kb on + strand, within GFF4773at 4769.054 kb on - strand, within GFF4773at 4769.070 kb on + strand, within GFF4773at 4769.070 kb on + strand, within GFF4773at 4769.070 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.082 kb on + strand, within GFF4773at 4769.107 kb on + strandat 4769.169 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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4,767,946 + -0.7
4,767,946 + -1.6
4,767,997 + GFF4772 0.10 -1.4
4,767,997 + GFF4772 0.10 -2.5
4,768,002 + GFF4772 0.11 -0.8
4,768,002 + GFF4772 0.11 -2.2
4,768,003 - GFF4772 0.11 -0.3
4,768,005 - GFF4772 0.11 -1.9
4,768,008 + GFF4772 0.11 +0.0
4,768,025 + GFF4772 0.13 -1.0
4,768,025 + GFF4772 0.13 -1.0
4,768,038 - GFF4772 0.14 -1.6
4,768,040 - GFF4772 0.14 -0.3
4,768,045 + GFF4772 0.15 -0.8
4,768,045 + GFF4772 0.15 -0.7
4,768,050 - GFF4772 0.15 -0.1
4,768,052 + GFF4772 0.16 -0.9
4,768,052 + GFF4772 0.16 -2.5
4,768,055 - GFF4772 0.16 -1.7
4,768,060 - GFF4772 0.16 -0.5
4,768,072 - GFF4772 0.18 -0.6
4,768,101 - GFF4772 0.21 -0.2
4,768,113 - GFF4772 0.22 -1.2
4,768,113 - GFF4772 0.22 -0.2
4,768,126 + GFF4772 0.23 -0.9
4,768,133 + GFF4772 0.24 +0.2
4,768,133 + GFF4772 0.24 -1.1
4,768,133 + GFF4772 0.24 +0.7
4,768,134 - GFF4772 0.24 -0.1
4,768,134 - GFF4772 0.24 -0.2
4,768,134 - GFF4772 0.24 -2.2
4,768,138 + GFF4772 0.24 -1.1
4,768,141 - GFF4772 0.25 -0.6
4,768,141 - GFF4772 0.25 -0.4
4,768,141 - GFF4772 0.25 -0.8
4,768,151 - GFF4772 0.25 -0.5
4,768,154 + GFF4772 0.26 -0.0
4,768,154 + GFF4772 0.26 -0.9
4,768,154 + GFF4772 0.26 -0.9
4,768,162 - GFF4772 0.27 -1.2
4,768,191 - GFF4772 0.29 -0.9
4,768,192 + GFF4772 0.30 -0.2
4,768,223 + GFF4772 0.33 -1.1
4,768,226 - GFF4772 0.33 -2.0
4,768,244 + GFF4772 0.35 -2.2
4,768,250 - GFF4772 0.35 +0.1
4,768,252 - GFF4772 0.36 +0.6
4,768,267 + GFF4772 0.37 -0.3
4,768,267 + GFF4772 0.37 -1.9
4,768,331 - GFF4772 0.43 -0.5
4,768,338 - GFF4772 0.44 -0.3
4,768,340 + GFF4772 0.44 -0.9
4,768,348 + GFF4772 0.45 +0.7
4,768,355 + GFF4772 0.46 -0.7
4,768,355 + GFF4772 0.46 +0.4
4,768,355 + GFF4772 0.46 +0.1
4,768,373 - GFF4772 0.48 -0.4
4,768,384 + GFF4772 0.49 -1.2
4,768,384 + GFF4772 0.49 +0.6
4,768,384 + GFF4772 0.49 -0.8
4,768,384 + GFF4772 0.49 -1.2
4,768,384 + GFF4772 0.49 -0.2
4,768,384 + GFF4772 0.49 +0.4
4,768,384 + GFF4772 0.49 +0.0
4,768,384 + GFF4772 0.49 -1.0
4,768,384 + GFF4772 0.49 -1.0
4,768,384 + GFF4772 0.49 +0.4
4,768,384 + GFF4772 0.49 +1.4
4,768,384 + GFF4772 0.49 +0.1
4,768,384 + GFF4772 0.49 +0.6
4,768,384 + GFF4772 0.49 +0.7
4,768,384 + GFF4772 0.49 -2.2
4,768,384 + GFF4772 0.49 -1.5
4,768,392 - GFF4772 0.49 -1.3
4,768,392 - GFF4772 0.49 -2.6
4,768,392 - GFF4772 0.49 -1.4
4,768,392 - GFF4772 0.49 +0.1
4,768,392 - GFF4772 0.49 -0.4
4,768,392 - GFF4772 0.49 -0.5
4,768,392 - GFF4772 0.49 -1.0
4,768,392 - GFF4772 0.49 -1.5
4,768,392 - GFF4772 0.49 -0.3
4,768,392 - GFF4772 0.49 -1.3
4,768,392 - GFF4772 0.49 -0.6
4,768,392 - GFF4772 0.49 -0.5
4,768,392 - GFF4772 0.49 +0.3
4,768,392 - GFF4772 0.49 -0.7
4,768,392 - GFF4772 0.49 +0.3
4,768,392 - GFF4772 0.49 -0.3
4,768,392 - GFF4772 0.49 -0.5
4,768,392 - GFF4772 0.49 -1.8
4,768,392 - GFF4772 0.49 +0.9
4,768,392 - GFF4772 0.49 -0.5
4,768,392 - GFF4772 0.49 -0.4
4,768,392 - GFF4772 0.49 -1.7
4,768,392 - GFF4772 0.49 -1.8
4,768,392 - GFF4772 0.49 -0.8
4,768,392 - GFF4772 0.49 -2.5
4,768,392 - GFF4772 0.49 +0.5
4,768,392 - GFF4772 0.49 -1.8
4,768,392 - GFF4772 0.49 -2.4
4,768,392 - GFF4772 0.49 -0.0
4,768,392 - GFF4772 0.49 -0.1
4,768,392 - GFF4772 0.49 +0.2
4,768,392 - GFF4772 0.49 +0.2
4,768,392 - GFF4772 0.49 -0.2
4,768,392 - GFF4772 0.49 -1.0
4,768,392 - GFF4772 0.49 -1.8
4,768,392 - GFF4772 0.49 -1.1
4,768,392 - GFF4772 0.49 -1.8
4,768,392 - GFF4772 0.49 +0.5
4,768,392 - GFF4772 0.49 -0.3
4,768,392 - GFF4772 0.49 -0.8
4,768,392 - GFF4772 0.49 -0.2
4,768,392 - GFF4772 0.49 -0.3
4,768,392 - GFF4772 0.49 -0.2
4,768,448 + GFF4772 0.55 -0.9
4,768,464 - GFF4772 0.57 -0.5
4,768,479 + GFF4772 0.58 -1.5
4,768,485 - GFF4772 0.59 -1.7
4,768,487 - GFF4772 0.59 -0.4
4,768,489 + GFF4772 0.59 -1.2
4,768,489 + GFF4772 0.59 -1.4
4,768,489 + GFF4772 0.59 -1.1
4,768,489 + GFF4772 0.59 -3.1
4,768,489 - GFF4772 0.59 -0.3
4,768,507 - GFF4772 0.61 -1.5
4,768,513 - GFF4772 0.61 -0.6
4,768,513 - GFF4772 0.61 -0.6
4,768,529 + GFF4772 0.63 -2.1
4,768,529 + GFF4772 0.63 -1.0
4,768,529 + GFF4772 0.63 -1.1
4,768,529 + GFF4772 0.63 -0.9
4,768,529 + GFF4772 0.63 -1.1
4,768,537 - GFF4772 0.64 -1.2
4,768,537 - GFF4772 0.64 +0.3
4,768,594 + GFF4772 0.69 -1.6
4,768,597 - GFF4772 0.70 -0.1
4,768,597 - GFF4772 0.70 +0.5
4,768,598 + GFF4772 0.70 -1.8
4,768,619 + GFF4772 0.72 -0.9
4,768,619 + GFF4772 0.72 -2.0
4,768,635 - GFF4772 0.74 -3.1
4,768,654 - GFF4772 0.75 -2.5
4,768,712 + GFF4772 0.81 -2.1
4,768,712 + GFF4772 0.81 -1.0
4,768,737 - GFF4772 0.84 -1.7
4,768,737 - GFF4772 0.84 +1.3
4,768,782 + GFF4772 0.88 -0.1
4,768,790 - GFF4772 0.89 -1.0
4,768,794 + GFF4772 0.89 -2.4
4,768,810 + -0.9
4,768,810 + -0.5
4,768,867 + -1.8
4,768,885 - -0.8
4,768,893 - -0.2
4,768,907 + -3.2
4,768,907 + -2.0
4,768,907 + -0.7
4,768,907 + -2.5
4,768,907 + -0.7
4,768,907 + +0.0
4,768,911 - -1.1
4,768,914 + -0.2
4,768,914 + -0.3
4,768,915 + -1.8
4,768,915 - +0.9
4,768,915 - +0.4
4,768,915 - -1.5
4,768,915 - -0.5
4,768,920 - -2.0
4,768,922 - -0.3
4,768,922 - +0.6
4,768,930 - -2.2
4,768,969 - GFF4773 0.28 -1.1
4,768,969 - GFF4773 0.28 -2.4
4,768,969 - GFF4773 0.28 -1.2
4,768,969 - GFF4773 0.28 -0.3
4,768,988 + GFF4773 0.39 -1.8
4,769,022 + GFF4773 0.57 -0.6
4,769,022 + GFF4773 0.57 -2.8
4,769,054 - GFF4773 0.74 -1.2
4,769,070 + GFF4773 0.83 -1.7
4,769,070 + GFF4773 0.83 -0.2
4,769,070 + GFF4773 0.83 +0.6
4,769,082 + GFF4773 0.89 -1.1
4,769,082 + GFF4773 0.89 +0.2
4,769,082 + GFF4773 0.89 +0.4
4,769,082 + GFF4773 0.89 +0.7
4,769,082 + GFF4773 0.89 -0.5
4,769,082 + GFF4773 0.89 -0.3
4,769,107 + +0.6
4,769,169 + +0.1

Or see this region's nucleotide sequence