Strain Fitness in Sphingobium sp. HT1-2 around GFF4684

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,681,743	+		GFF4682	0.76	+0.3
4,681,743	+		GFF4682	0.76	-0.8
4,681,743	+		GFF4682	0.76	-1.7
4,681,751	-		GFF4682	0.76	+0.3
4,681,751	-		GFF4682	0.76	-0.1
4,681,751	-		GFF4682	0.76	+0.2
4,681,753	+		GFF4682	0.76	+1.6
4,681,757	-		GFF4682	0.76	-1.1
4,681,757	-		GFF4682	0.76	+1.0
4,681,757	-		GFF4682	0.76	+0.8
4,681,777	-		GFF4682	0.77	+0.5
4,681,787	+		GFF4682	0.77	+0.6
4,681,792	+		GFF4682	0.78	+1.0
4,681,795	-		GFF4682	0.78	+0.6
4,681,825	+		GFF4682	0.79	+0.2
4,681,825	+		GFF4682	0.79	+0.9
4,681,825	+		GFF4682	0.79	+0.5
4,681,825	+		GFF4682	0.79	+0.6
4,681,825	+		GFF4682	0.79	-0.2
4,681,825	+		GFF4682	0.79	+0.5
4,681,827	+		GFF4682	0.79	-1.5
4,681,827	+		GFF4682	0.79	-0.3
4,681,827	+		GFF4682	0.79	-0.7
4,681,827	+		GFF4682	0.79	+0.0
4,681,827	+		GFF4682	0.79	+0.5
4,681,827	+		GFF4682	0.79	+0.4
4,681,827	+		GFF4682	0.79	+0.6
4,681,827	+		GFF4682	0.79	-1.9
4,681,827	+		GFF4682	0.79	+1.1
4,681,827	+		GFF4682	0.79	-1.1
4,681,827	+		GFF4682	0.79	+1.4
4,681,833	-		GFF4682	0.79	+0.0
4,681,835	-		GFF4682	0.79	+0.3
4,681,835	-		GFF4682	0.79	-0.1
4,681,835	-		GFF4682	0.79	+1.5
4,681,835	-		GFF4682	0.79	+0.0
4,681,835	-		GFF4682	0.79	+1.2
4,681,835	-		GFF4682	0.79	-0.6
4,681,835	-		GFF4682	0.79	+0.1
4,681,835	-		GFF4682	0.79	+1.0
4,681,835	-		GFF4682	0.79	+0.3
4,681,835	-		GFF4682	0.79	-0.0
4,681,865	-		GFF4682	0.81	+0.2
4,681,865	-		GFF4682	0.81	+0.1
4,681,894	+		GFF4682	0.82	-0.9
4,681,923	+		GFF4682	0.83	-0.6
4,681,923	+		GFF4682	0.83	-1.6
4,681,923	+		GFF4682	0.83	+0.0
4,681,923	+		GFF4682	0.83	+1.7
4,681,923	+		GFF4682	0.83	+0.7
4,681,923	+		GFF4682	0.83	-1.1
4,681,923	+		GFF4682	0.83	+1.4
4,681,923	+		GFF4682	0.83	+0.8
4,681,923	+		GFF4682	0.83	-0.1
4,681,923	+		GFF4682	0.83	+0.4
4,681,923	+		GFF4682	0.83	-1.8
4,681,923	+		GFF4682	0.83	-0.4
4,681,923	+		GFF4682	0.83	+0.9
4,681,929	-		GFF4682	0.83	+0.2
4,681,931	-		GFF4682	0.84	+0.3
4,681,931	-		GFF4682	0.84	-1.4
4,681,931	-		GFF4682	0.84	+0.3
4,681,931	-		GFF4682	0.84	-0.7
4,681,931	-		GFF4682	0.84	+1.7
4,681,931	-		GFF4682	0.84	-1.1
4,681,931	-		GFF4682	0.84	+0.8
4,681,931	-		GFF4682	0.84	+0.8
4,681,931	-		GFF4682	0.84	+1.3
4,681,931	-		GFF4682	0.84	+1.0
4,681,936	-		GFF4682	0.84	+0.4
4,681,936	-		GFF4682	0.84	+0.7
4,681,936	-		GFF4682	0.84	+0.1
4,681,936	-		GFF4682	0.84	+0.7
4,681,938	+		GFF4682	0.84	-0.5
4,681,938	+		GFF4682	0.84	-0.3
4,681,938	+		GFF4682	0.84	+0.8
4,681,938	+		GFF4682	0.84	-0.4
4,681,938	+		GFF4682	0.84	-0.6
4,681,941	-		GFF4682	0.84	+0.2
4,681,986	+		GFF4682	0.86	-1.2
4,682,000	-		GFF4682	0.86	+0.0
4,682,010	+		GFF4682	0.87	-1.1
4,682,018	-		GFF4682	0.87	-2.5
4,682,042	+		GFF4682	0.88	+1.3
4,682,043	-		GFF4682	0.88	+1.0
4,682,050	-		GFF4682	0.88	+0.8
4,682,056	+		GFF4682	0.89	+0.7
4,682,064	-		GFF4682	0.89	+0.2
4,682,107	+				+0.9
4,682,110	+				-0.4
4,682,115	-				-0.4
4,682,115	-				+0.8
4,682,115	-				+0.6
4,682,115	-				+0.4
4,682,130	-				+0.7
4,682,166	-				-0.6
4,682,209	+				+0.1
4,682,214	+				+0.4
4,682,214	+				-0.4
4,682,214	+				-2.1
4,682,214	+				+0.6
4,682,222	-				+0.6
4,682,222	-				-0.4
4,682,222	-				+0.7
4,682,222	-				+0.1
4,682,222	-				+0.9
4,682,232	+				+1.5
4,682,253	-				-1.1
4,682,284	+				+1.2
4,682,289	+				+0.6
4,682,292	-				+1.2
4,682,302	-				-0.7
4,682,303	-				-0.3
4,682,307	+				-1.1
4,682,333	-				+0.1
4,682,338	-				+0.9
4,682,359	+				-0.4
4,682,380	+				+0.9
4,682,388	-				-0.0
4,682,401	+				-0.2
4,682,409	-				+0.0
4,682,409	-				-1.4
4,682,460	+		GFF4683	0.44	-0.8
4,682,468	-		GFF4683	0.50	-1.5
4,682,505	+		GFF4683	0.77	+0.2
4,682,505	+		GFF4683	0.77	+0.1
4,682,515	+		GFF4683	0.84	+0.3
4,682,523	-				-0.4
4,682,523	-				+0.0
4,682,561	-				+0.7
4,682,561	-				+2.0
4,682,561	-				+0.7
4,682,563	+				+0.1
4,682,573	-				+2.3
4,682,594	-				+0.7
4,682,598	-				-1.5
4,682,598	-				-0.0
4,682,621	+				+0.4
4,682,623	-				-0.5
4,682,638	-				+1.6
4,682,638	-				+0.8
4,682,643	+				+0.5
4,682,643	+				+0.9
4,682,643	+				-1.5
4,682,643	+				-0.8
4,682,643	+				+0.2
4,682,644	+				-0.3
4,682,651	-				+0.9
4,682,651	-				-1.2
4,682,651	-				+0.0
4,682,651	-				+0.3
4,682,651	-				+0.3
4,682,651	-				+1.4
4,682,653	+				-0.8
4,682,653	+				-0.4
4,682,654	+				-1.4
4,682,654	+				+1.0
4,682,654	+				+0.3
4,682,661	-				+0.5
4,682,662	-				-0.9
4,682,662	-				+0.5
4,682,667	+				-1.6
4,682,667	+				+0.3
4,682,667	+				-0.5
4,682,675	-				-0.5
4,682,675	-				-0.7
4,682,675	-				+1.4
4,682,688	+				-1.8
4,682,696	-				+0.4
4,682,698	+				+1.1
4,682,698	+				+0.5
4,682,698	+				-1.4
4,682,698	+				+0.8
4,682,698	+				+1.6
4,682,706	-				+0.0
4,682,706	-				+0.6
4,682,719	+				-0.3
4,682,775	+				+0.1
4,682,775	+				-2.2
4,682,775	+				-0.3
4,682,775	+				-0.3
4,682,775	+				-0.3
4,682,775	+				-0.2
4,682,775	+				+0.2
4,682,775	+				+0.2
4,682,775	+				-1.8
4,682,775	+				+1.6
4,682,776	-				+2.1
4,682,780	+				+0.9
4,682,783	-				-0.1
4,682,783	-				+1.2
4,682,783	-				-1.8
4,682,783	-				+1.0
4,682,783	-				+1.5
4,682,783	-				+1.1
4,682,783	-				+0.6
4,682,783	-				+0.8
4,682,783	-				+0.5
4,682,783	-				-0.4
4,682,783	-				+0.1
4,682,783	-				-0.3
4,682,783	-				+0.3
4,682,783	-				-0.4
4,682,783	-				+1.4
4,682,785	+				-1.5
4,682,785	+				+1.2
4,682,785	+				+2.1
4,682,816	+				-0.1
4,682,816	+				-0.5
4,682,816	+				+0.0
4,682,828	+				-0.2
4,682,846	+				+0.3
4,682,846	+				+0.8
4,682,846	+				-0.5
4,682,846	+				+1.1
4,682,846	+				+1.8
4,682,846	+				-0.8
4,682,846	+				+1.2
4,682,846	+				+0.6
4,682,851	-				+0.2
4,682,854	-				+0.2
4,682,854	-				-0.5
4,682,854	-				-1.7
4,682,854	-				+0.1
4,682,931	+				+1.1
4,682,931	+				+0.9
4,682,957	-				+1.7
4,682,957	-				-1.6
4,682,996	-				-1.2
4,683,001	-				-0.1
4,683,019	+		GFF4684	0.10	-2.4
4,683,027	+		GFF4684	0.10	+0.7
4,683,027	+		GFF4684	0.10	+0.2
4,683,027	-		GFF4684	0.10	-0.2
4,683,036	+		GFF4684	0.11	-2.7
4,683,065	+		GFF4684	0.12	-0.9
4,683,092	-		GFF4684	0.13	+1.0
4,683,092	-		GFF4684	0.13	-1.8
4,683,110	+		GFF4684	0.13	+0.2
4,683,117	+		GFF4684	0.13	+1.4
4,683,117	+		GFF4684	0.13	-0.4
4,683,121	+		GFF4684	0.14	+0.2
4,683,129	-		GFF4684	0.14	-0.2
4,683,129	-		GFF4684	0.14	-0.5
4,683,175	+		GFF4684	0.16	+1.0
4,683,183	-		GFF4684	0.16	-1.0
4,683,197	+		GFF4684	0.16	+0.8
4,683,199	+		GFF4684	0.16	+0.1
4,683,199	+		GFF4684	0.16	-1.8
4,683,207	-		GFF4684	0.17	-0.1
4,683,207	-		GFF4684	0.17	-0.3
4,683,248	-		GFF4684	0.18	+0.9
4,683,268	+		GFF4684	0.19	+0.5
4,683,271	-		GFF4684	0.19	-1.9
4,683,276	-		GFF4684	0.19	-0.3
4,683,291	+		GFF4684	0.20	+1.5
4,683,300	+		GFF4684	0.20	+1.9
4,683,301	+		GFF4684	0.20	+0.2
4,683,345	+		GFF4684	0.21	-1.2
4,683,345	-		GFF4684	0.21	-2.0
4,683,389	-		GFF4684	0.23	-2.6
4,683,399	+		GFF4684	0.23	+0.2
4,683,399	+		GFF4684	0.23	+0.9
4,683,399	+		GFF4684	0.23	+0.8
4,683,401	-		GFF4684	0.23	-1.4
4,683,407	-		GFF4684	0.24	-0.1
4,683,407	-		GFF4684	0.24	-0.0
4,683,407	-		GFF4684	0.24	+0.9
4,683,407	-		GFF4684	0.24	-0.5
4,683,446	-		GFF4684	0.25	+0.7
4,683,448	+		GFF4684	0.25	-1.9
4,683,475	-		GFF4684	0.26	-0.0
4,683,480	-		GFF4684	0.26	-0.4
4,683,485	+		GFF4684	0.26	-0.0
4,683,485	+		GFF4684	0.26	-1.7
4,683,485	+		GFF4684	0.26	-0.8
4,683,485	+		GFF4684	0.26	+1.8
4,683,485	+		GFF4684	0.26	+0.1
4,683,493	-		GFF4684	0.27	+1.1
4,683,493	-		GFF4684	0.27	-0.1
4,683,495	-		GFF4684	0.27	+0.7
4,683,528	+		GFF4684	0.28	+1.8
4,683,528	+		GFF4684	0.28	+0.2
4,683,528	+		GFF4684	0.28	+1.0
4,683,536	-		GFF4684	0.28	+0.6
4,683,536	-		GFF4684	0.28	+1.0
4,683,564	-		GFF4684	0.29	-1.0
4,683,566	-		GFF4684	0.29	-1.4
4,683,567	-		GFF4684	0.29	+1.2
4,683,600	+		GFF4684	0.30	-1.3
4,683,605	+		GFF4684	0.30	+0.4
4,683,618	-		GFF4684	0.31	+0.3
4,683,621	+		GFF4684	0.31	+0.6
4,683,629	-		GFF4684	0.31	+0.8
4,683,647	+		GFF4684	0.32	-0.5
4,683,653	-		GFF4684	0.32	-1.3
4,683,683	-		GFF4684	0.33	+0.5
4,683,685	+		GFF4684	0.33	+1.0
4,683,696	+		GFF4684	0.34	+1.2
4,683,723	+		GFF4684	0.35	+0.9
4,683,766	-		GFF4684	0.36	+0.6
4,683,766	-		GFF4684	0.36	-0.3
4,683,774	+		GFF4684	0.36	+0.3
4,683,792	+		GFF4684	0.37	+0.5
4,683,792	+		GFF4684	0.37	-0.7
4,683,800	-		GFF4684	0.37	+0.2
4,683,821	+		GFF4684	0.38	+1.0
4,683,838	+		GFF4684	0.39	-0.1
4,683,838	+		GFF4684	0.39	+0.0
4,683,838	+		GFF4684	0.39	-1.2
4,683,838	+		GFF4684	0.39	-0.0
4,683,838	+		GFF4684	0.39	+0.1
4,683,846	-		GFF4684	0.39	-0.1
4,683,846	-		GFF4684	0.39	+0.8
4,683,846	-		GFF4684	0.39	+1.6
4,683,846	-		GFF4684	0.39	+0.2
4,683,846	-		GFF4684	0.39	+0.5
4,683,846	-		GFF4684	0.39	+1.0
4,683,859	-		GFF4684	0.39	-0.5
4,683,864	+		GFF4684	0.39	-0.4
4,683,874	+		GFF4684	0.40	+0.4
4,683,893	-		GFF4684	0.40	-1.5
4,683,902	+		GFF4684	0.41	+0.1
4,683,902	+		GFF4684	0.41	+1.1
4,683,903	-		GFF4684	0.41	-0.3
4,683,907	+		GFF4684	0.41	-0.3
4,683,907	+		GFF4684	0.41	-0.3
4,683,907	+		GFF4684	0.41	-0.2
4,683,907	+		GFF4684	0.41	+0.3
4,683,910	-		GFF4684	0.41	-1.0
4,683,910	-		GFF4684	0.41	+0.4
4,683,912	+		GFF4684	0.41	+0.0
4,683,912	+		GFF4684	0.41	-0.5
4,683,912	+		GFF4684	0.41	+0.4
4,683,912	+		GFF4684	0.41	-1.7
4,683,915	-		GFF4684	0.41	+0.5
4,683,915	-		GFF4684	0.41	+0.3
4,683,915	-		GFF4684	0.41	+0.2
4,683,915	-		GFF4684	0.41	-1.0
4,683,915	-		GFF4684	0.41	-1.2
4,683,920	-		GFF4684	0.41	-0.1
4,683,920	-		GFF4684	0.41	-0.7
4,683,920	-		GFF4684	0.41	-1.5
4,683,922	+		GFF4684	0.41	-0.7
4,683,927	+		GFF4684	0.42	-1.9
4,683,930	-		GFF4684	0.42	-0.2
4,683,930	-		GFF4684	0.42	-1.0
4,683,930	-		GFF4684	0.42	+1.7
4,683,941	-		GFF4684	0.42	+0.2
4,683,956	-		GFF4684	0.43	-1.8
4,683,970	-		GFF4684	0.43	-0.4
4,683,998	+		GFF4684	0.44	+1.1
4,684,003	+		GFF4684	0.44	+0.8
4,684,003	+		GFF4684	0.44	-0.4
4,684,003	+		GFF4684	0.44	+1.3
4,684,003	+		GFF4684	0.44	-0.1
4,684,003	+		GFF4684	0.44	+1.3
4,684,003	+		GFF4684	0.44	+0.2
4,684,003	+		GFF4684	0.44	+0.4
4,684,006	-		GFF4684	0.44	-0.3
4,684,006	-		GFF4684	0.44	-0.2
4,684,006	-		GFF4684	0.44	+0.3
4,684,006	-		GFF4684	0.44	-0.2
4,684,011	-		GFF4684	0.45	-1.5
4,684,011	-		GFF4684	0.45	-1.2
4,684,011	-		GFF4684	0.45	+1.0
4,684,011	-		GFF4684	0.45	+0.5
4,684,011	-		GFF4684	0.45	+0.7
4,684,011	-		GFF4684	0.45	-1.4
4,684,039	-		GFF4684	0.46	+1.8
4,684,073	-		GFF4684	0.47	+1.9
4,684,092	+		GFF4684	0.47	+0.2
4,684,122	-		GFF4684	0.48	-1.2
4,684,172	+		GFF4684	0.50	-1.3
4,684,172	+		GFF4684	0.50	-0.7
4,684,177	+		GFF4684	0.50	+0.3
4,684,177	+		GFF4684	0.50	+0.3
4,684,180	-		GFF4684	0.50	+0.4
4,684,180	-		GFF4684	0.50	+0.7
4,684,180	-		GFF4684	0.50	+0.9
4,684,180	-		GFF4684	0.50	+0.9
4,684,187	-		GFF4684	0.51	+0.4
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4,684,198	+		GFF4684	0.51	+0.2
4,684,204	-		GFF4684	0.51	+0.3
4,684,211	+		GFF4684	0.52	-1.7
4,684,211	+		GFF4684	0.52	+1.5
4,684,211	+		GFF4684	0.52	-1.2
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4,684,216	+		GFF4684	0.52	-0.3
4,684,219	-		GFF4684	0.52	+1.5
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4,684,287	+		GFF4684	0.54	+1.1
4,684,287	+		GFF4684	0.54	-1.1
4,684,287	+		GFF4684	0.54	+1.0
4,684,287	+		GFF4684	0.54	-2.9
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4,684,295	-		GFF4684	0.54	-0.1
4,684,295	-		GFF4684	0.54	-0.0
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4,684,300	-		GFF4684	0.55	-0.2
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4,684,313	+		GFF4684	0.55	-1.0
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4,684,320	+		GFF4684	0.55	+1.5
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4,684,562	+		GFF4684	0.64	+1.0
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4,684,605	+		GFF4684	0.65	-2.0
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4,684,613	-		GFF4684	0.65	-0.5
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4,684,624	-		GFF4684	0.66	-0.5
4,684,624	-		GFF4684	0.66	-0.0
4,684,624	-		GFF4684	0.66	-0.6
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4,684,656	+		GFF4684	0.67	-0.5
4,684,656	+		GFF4684	0.67	+0.6
4,684,656	+		GFF4684	0.67	+0.9
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4,684,664	-		GFF4684	0.67	-0.4
4,684,680	+		GFF4684	0.68	+0.2
4,684,680	+		GFF4684	0.68	-2.0
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4,684,699	+		GFF4684	0.68	+0.8
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4,684,707	-		GFF4684	0.69	+0.5
4,684,717	-		GFF4684	0.69	-1.1
4,684,749	-		GFF4684	0.70	+0.9
4,684,762	-		GFF4684	0.71	+0.0
4,684,781	+		GFF4684	0.71	+0.4
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4,684,837	+		GFF4684	0.73	+1.2
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4,684,857	+		GFF4684	0.74	-0.1
4,684,870	-		GFF4684	0.74	-0.4
4,684,881	+		GFF4684	0.75	-0.9
4,684,891	+		GFF4684	0.75	-1.0
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4,685,050	+		GFF4684	0.81	+0.2
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4,685,050	+		GFF4684	0.81	+1.1
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4,685,057	-		GFF4684	0.81	-0.1
4,685,057	-		GFF4684	0.81	+1.1
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4,685,058	-		GFF4684	0.81	+0.8
4,685,058	-		GFF4684	0.81	-0.3
4,685,058	-		GFF4684	0.81	-0.6
4,685,059	-		GFF4684	0.81	-0.7
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4,685,082	+		GFF4684	0.82	+1.0
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4,685,090	-		GFF4684	0.82	+0.5
4,685,090	-		GFF4684	0.82	-1.3
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4,685,130	+		GFF4684	0.83	-0.4
4,685,130	+		GFF4684	0.83	+0.1
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4,685,130	+		GFF4684	0.83	-0.2
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4,685,130	+		GFF4684	0.83	+0.8
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4,685,138	-		GFF4684	0.84	-0.1
4,685,138	-		GFF4684	0.84	-0.4
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4,685,150	+		GFF4684	0.84	+0.1
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4,685,158	-		GFF4684	0.84	-1.2
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4,685,210	+		GFF4684	0.86	-0.2
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4,685,218	-		GFF4684	0.87	-1.4
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4,685,235	-		GFF4684	0.87	-1.2
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4,685,235	-		GFF4684	0.87	-0.8
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4,685,313	+		GFF4684	0.90	+1.1
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4,685,321	+				+1.6
4,685,326	+				+1.2
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4,685,340	-				+0.2
4,685,340	-				+0.1
4,685,340	-				+0.3
4,685,342	-				-1.4
4,685,342	-				+1.0
4,685,355	-				+1.1
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4,685,413	+				-0.3
4,685,413	+				-2.3
4,685,413	+				+0.8
4,685,413	+				+0.2
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4,685,413	+				+0.4
4,685,413	+				+1.4
4,685,413	+				+1.1
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4,685,421	-				+0.4
4,685,421	-				+0.3
4,685,421	-				+0.0
4,685,421	-				-0.7
4,685,421	-				-0.7
4,685,431	-				-1.1
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4,685,465	+				+0.2
4,685,484	+				+0.9
4,685,484	+				+0.0
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4,685,492	-				+0.8
4,685,492	-				-0.5
4,685,492	-				+1.4
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4,685,504	+				+0.4
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4,685,518	+				-0.1
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4,685,590	+				-2.5
4,685,590	+				+1.4
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4,685,598	-				+0.4
4,685,636	-				-0.0
4,685,672	-				-1.9
4,685,681	-				+0.4
4,685,697	-				-1.4
4,685,730	-				-1.1
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4,685,749	-				+1.1
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4,685,750	+				+0.5
4,685,750	+				-0.9
4,685,753	-				+0.8
4,685,761	-				-1.7
4,685,775	-				+0.3
4,685,785	-				-0.1
4,685,804	+				+1.8
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4,685,804	+				-1.8
4,685,804	+				-2.1
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4,685,812	-				-1.6
4,685,812	-				+0.8
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4,685,870	+				-0.4
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