Strain Fitness in Sphingobium sp. HT1-2 around GFF4667

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,663,646	+		GFF4664	0.44	+0.5
4,663,646	+		GFF4664	0.44	-0.0
4,663,650	+		GFF4664	0.45	-2.9
4,663,654	+		GFF4664	0.46	-0.1
4,663,654	-		GFF4664	0.46	+0.4
4,663,654	-		GFF4664	0.46	+0.3
4,663,656	+		GFF4664	0.47	-0.3
4,663,656	+		GFF4664	0.47	-1.2
4,663,658	-		GFF4664	0.47	+0.8
4,663,658	-		GFF4664	0.47	-0.6
4,663,659	-		GFF4664	0.48	-1.0
4,663,661	+		GFF4664	0.48	-2.3
4,663,664	-		GFF4664	0.49	-2.5
4,663,664	-		GFF4664	0.49	-0.5
4,663,664	-		GFF4664	0.49	-0.3
4,663,664	-		GFF4664	0.49	-1.7
4,663,664	-		GFF4664	0.49	+0.7
4,663,664	-		GFF4664	0.49	-0.5
4,663,664	-		GFF4664	0.49	+0.4
4,663,665	+		GFF4664	0.49	-1.0
4,663,665	+		GFF4664	0.49	-0.8
4,663,665	+		GFF4664	0.49	-0.1
4,663,665	+		GFF4664	0.49	-0.5
4,663,670	+		GFF4664	0.51	+1.0
4,663,670	+		GFF4664	0.51	-2.0
4,663,673	-		GFF4664	0.52	-0.5
4,663,673	-		GFF4664	0.52	-0.2
4,663,673	-		GFF4664	0.52	+1.0
4,663,673	-		GFF4664	0.52	-0.8
4,663,673	-		GFF4664	0.52	-1.5
4,663,675	+		GFF4664	0.52	-0.5
4,663,678	-		GFF4664	0.53	-1.3
4,663,678	-		GFF4664	0.53	-1.4
4,663,678	-		GFF4664	0.53	+1.4
4,663,678	-		GFF4664	0.53	-0.4
4,663,679	+		GFF4664	0.53	+1.2
4,663,679	+		GFF4664	0.53	-0.6
4,663,679	+		GFF4664	0.53	+0.2
4,663,679	+		GFF4664	0.53	-1.0
4,663,680	+		GFF4664	0.54	+0.3
4,663,683	-		GFF4664	0.54	+0.5
4,663,687	-		GFF4664	0.55	-1.5
4,663,689	+		GFF4664	0.56	-0.8
4,663,694	+		GFF4664	0.57	-0.3
4,663,703	+		GFF4664	0.60	+0.4
4,663,705	-		GFF4664	0.61	+0.6
4,663,712	+		GFF4664	0.62	-1.2
4,663,720	-		GFF4664	0.65	+0.5
4,663,720	-		GFF4664	0.65	-2.0
4,663,720	-		GFF4664	0.65	-0.0
4,663,720	-		GFF4664	0.65	+0.3
4,663,720	-		GFF4664	0.65	-0.5
4,663,742	+		GFF4664	0.71	+0.0
4,663,746	+		GFF4664	0.72	-0.2
4,663,751	+		GFF4664	0.73	-0.9
4,663,754	-		GFF4664	0.74	-0.6
4,663,756	+		GFF4664	0.75	-0.5
4,663,756	+		GFF4664	0.75	+0.3
4,663,756	+		GFF4664	0.75	-0.3
4,663,756	+		GFF4664	0.75	-0.6
4,663,756	+		GFF4664	0.75	-0.9
4,663,764	-		GFF4664	0.77	+0.0
4,663,773	+		GFF4664	0.80	-1.6
4,663,774	+		GFF4664	0.80	-0.5
4,663,782	-		GFF4664	0.82	-0.2
4,663,782	-		GFF4664	0.82	-0.0
4,663,782	-		GFF4664	0.82	-0.3
4,663,782	-		GFF4664	0.82	-0.6
4,663,782	-		GFF4664	0.82	-0.7
4,663,822	+				-2.0
4,663,838	-				-0.5
4,663,838	-				-0.8
4,663,840	-				-1.4
4,663,843	-				-0.9
4,663,852	+				-0.1
4,663,853	+				-0.5
4,663,860	-				+0.0
4,663,860	-				+0.0
4,663,860	-				+0.6
4,663,860	-				-0.5
4,663,861	+				-2.4
4,663,861	-				-0.8
4,663,861	-				-0.7
4,663,861	-				+0.2
4,663,861	-				-1.7
4,663,865	+				-1.8
4,663,901	+		GFF4665	0.13	+1.1
4,663,913	+		GFF4665	0.16	-0.4
4,663,913	+		GFF4665	0.16	+0.2
4,663,913	+		GFF4665	0.16	+0.3
4,663,928	+		GFF4665	0.19	-2.1
4,663,942	+		GFF4665	0.22	+0.2
4,663,942	+		GFF4665	0.22	-0.3
4,663,942	+		GFF4665	0.22	-1.1
4,663,942	+		GFF4665	0.22	+0.3
4,663,942	+		GFF4665	0.22	-0.1
4,663,942	+		GFF4665	0.22	+0.1
4,663,942	+		GFF4665	0.22	+0.1
4,663,942	+		GFF4665	0.22	-0.5
4,663,947	+		GFF4665	0.23	-0.9
4,663,949	+		GFF4665	0.24	+2.3
4,663,950	-		GFF4665	0.24	-0.3
4,663,957	-		GFF4665	0.25	+0.9
4,663,985	+		GFF4665	0.32	+0.0
4,663,993	-		GFF4665	0.33	-0.1
4,664,033	-		GFF4665	0.42	-0.7
4,664,043	+		GFF4665	0.44	-0.1
4,664,049	-		GFF4665	0.46	+1.3
4,664,060	+		GFF4665	0.48	+0.6
4,664,068	-		GFF4665	0.50	-0.3
4,664,068	-		GFF4665	0.50	-1.9
4,664,073	+		GFF4665	0.51	-2.3
4,664,073	-		GFF4665	0.51	-0.7
4,664,123	+		GFF4665	0.62	-1.6
4,664,123	+		GFF4665	0.62	+1.2
4,664,123	+		GFF4665	0.62	+1.0
4,664,123	+		GFF4665	0.62	-0.4
4,664,123	+		GFF4665	0.62	+0.2
4,664,123	+		GFF4665	0.62	+0.6
4,664,123	+		GFF4665	0.62	-1.2
4,664,123	+		GFF4665	0.62	+0.8
4,664,123	+		GFF4665	0.62	+0.1
4,664,123	+		GFF4665	0.62	-2.3
4,664,123	+		GFF4665	0.62	+0.8
4,664,123	+		GFF4665	0.62	+1.1
4,664,123	+		GFF4665	0.62	+0.1
4,664,123	+		GFF4665	0.62	+0.2
4,664,123	+		GFF4665	0.62	-0.9
4,664,123	+		GFF4665	0.62	+0.0
4,664,123	+		GFF4665	0.62	-0.9
4,664,123	+		GFF4665	0.62	-2.8
4,664,123	+		GFF4665	0.62	-0.6
4,664,123	+		GFF4665	0.62	+0.6
4,664,123	+		GFF4665	0.62	-2.2
4,664,123	+		GFF4665	0.62	+0.3
4,664,123	+		GFF4665	0.62	+0.8
4,664,123	+		GFF4665	0.62	+0.2
4,664,123	+		GFF4665	0.62	-0.8
4,664,131	-		GFF4665	0.64	+0.5
4,664,131	-		GFF4665	0.64	-0.5
4,664,131	-		GFF4665	0.64	+0.2
4,664,131	-		GFF4665	0.64	-2.6
4,664,131	-		GFF4665	0.64	-1.7
4,664,131	-		GFF4665	0.64	-0.9
4,664,131	-		GFF4665	0.64	-0.9
4,664,131	-		GFF4665	0.64	-0.5
4,664,131	-		GFF4665	0.64	-0.6
4,664,131	-		GFF4665	0.64	-0.5
4,664,131	-		GFF4665	0.64	-0.1
4,664,131	-		GFF4665	0.64	-0.3
4,664,131	-		GFF4665	0.64	-1.1
4,664,131	-		GFF4665	0.64	-1.7
4,664,131	-		GFF4665	0.64	-1.3
4,664,131	-		GFF4665	0.64	+0.4
4,664,131	-		GFF4665	0.64	-0.4
4,664,131	-		GFF4665	0.64	+1.7
4,664,131	-		GFF4665	0.64	-1.1
4,664,131	-		GFF4665	0.64	+0.5
4,664,131	-		GFF4665	0.64	-0.0
4,664,131	-		GFF4665	0.64	-0.5
4,664,131	-		GFF4665	0.64	-0.4
4,664,131	-		GFF4665	0.64	+0.4
4,664,131	-		GFF4665	0.64	-0.5
4,664,131	-		GFF4665	0.64	-1.2
4,664,131	-		GFF4665	0.64	+0.8
4,664,131	-		GFF4665	0.64	-0.1
4,664,131	-		GFF4665	0.64	-0.5
4,664,131	-		GFF4665	0.64	+1.3
4,664,131	-		GFF4665	0.64	+0.7
4,664,131	-		GFF4665	0.64	+0.1
4,664,131	-		GFF4665	0.64	-0.3
4,664,131	-		GFF4665	0.64	-1.5
4,664,131	-		GFF4665	0.64	+1.5
4,664,148	+		GFF4665	0.68	-0.7
4,664,156	-		GFF4665	0.69	-0.5
4,664,158	+		GFF4665	0.70	+0.9
4,664,161	-		GFF4665	0.70	-0.9
4,664,165	+		GFF4665	0.71	+1.0
4,664,165	+		GFF4665	0.71	-1.1
4,664,166	-		GFF4665	0.72	+1.1
4,664,170	+		GFF4665	0.72	-1.2
4,664,170	+		GFF4665	0.72	+0.3
4,664,173	-		GFF4665	0.73	-1.9
4,664,173	-		GFF4665	0.73	-1.6
4,664,173	-		GFF4665	0.73	-0.4
4,664,173	-		GFF4665	0.73	-0.3
4,664,178	-		GFF4665	0.74	+0.4
4,664,178	-		GFF4665	0.74	-0.3
4,664,178	-		GFF4665	0.74	-0.4
4,664,217	-		GFF4665	0.83	-1.1
4,664,225	+		GFF4665	0.85	-1.4
4,664,225	+		GFF4665	0.85	-0.6
4,664,225	+		GFF4665	0.85	-1.2
4,664,225	+		GFF4665	0.85	+0.9
4,664,225	+		GFF4665	0.85	+0.3
4,664,225	+		GFF4665	0.85	-0.5
4,664,225	+		GFF4665	0.85	-2.0
4,664,233	-		GFF4665	0.86	-1.0
4,664,233	-		GFF4665	0.86	+0.3
4,664,233	-		GFF4665	0.86	-0.7
4,664,233	-		GFF4665	0.86	-1.0
4,664,233	-		GFF4665	0.86	-0.5
4,664,233	-		GFF4665	0.86	+1.5
4,664,233	-		GFF4665	0.86	-0.7
4,664,258	-				-1.7
4,664,258	-				-0.1
4,664,258	-				+1.0
4,664,385	-				-1.5
4,664,395	-				+0.6
4,664,395	-				-1.5
4,664,395	-				-1.3
4,664,395	-				-0.4
4,664,436	+		GFF4666	0.40	+1.2
4,664,504	+				-0.5
4,664,504	+				-1.8
4,664,504	+				+1.3
4,664,504	+				+1.1
4,664,504	+				+0.2
4,664,504	+				-0.9
4,664,512	-				-0.0
4,664,512	-				+0.4
4,664,512	-				+1.1
4,664,512	-				+0.0
4,664,512	-				+0.2
4,664,512	-				-0.1
4,664,512	-				+1.0
4,664,512	-				+0.4
4,664,512	-				-2.1
4,664,514	-				-0.9
4,664,516	+				-1.7
4,664,516	+				+0.3
4,664,516	+				+0.0
4,664,516	+				-0.9
4,664,524	-				-1.0
4,664,524	-				-0.7
4,664,542	-				-1.2
4,664,571	+				+0.7
4,664,600	-				-0.6
4,664,604	-				+0.1
4,664,648	+				+0.3
4,664,650	-				+0.3
4,664,657	-				+1.1
4,664,664	-				-0.7
4,664,667	+				+0.2
4,664,675	-				+0.8
4,664,677	+				-0.5
4,664,701	+				+1.0
4,664,714	-				+0.8
4,664,718	-				-2.0
4,664,719	-				-0.1
4,664,721	+				+1.3
4,664,729	+				-1.5
4,664,729	+				+0.4
4,664,745	+				+0.9
4,664,760	-				-1.9
4,664,760	-				+0.4
4,664,760	-				-0.1
4,664,760	-				-0.9
4,664,800	+		GFF4667	0.13	-0.1
4,664,800	+		GFF4667	0.13	-2.0
4,664,800	+		GFF4667	0.13	-0.5
4,664,800	+		GFF4667	0.13	+0.1
4,664,800	+		GFF4667	0.13	+0.2
4,664,800	+		GFF4667	0.13	-0.0
4,664,800	+		GFF4667	0.13	-0.3
4,664,800	+		GFF4667	0.13	-0.1
4,664,800	+		GFF4667	0.13	+0.9
4,664,930	+		GFF4667	0.23	+0.4
4,664,940	+		GFF4667	0.24	-1.5
4,664,955	+		GFF4667	0.25	+0.3
4,664,960	+		GFF4667	0.26	-0.7
4,664,968	-		GFF4667	0.26	-1.8
4,664,977	+		GFF4667	0.27	-0.1
4,664,982	+		GFF4667	0.27	-0.7
4,664,987	+		GFF4667	0.28	+0.6
4,664,990	-		GFF4667	0.28	-1.7
4,665,008	-		GFF4667	0.30	+0.8
4,665,011	+		GFF4667	0.30	+1.6
4,665,011	+		GFF4667	0.30	-2.0
4,665,038	-		GFF4667	0.32	+0.8
4,665,038	-		GFF4667	0.32	+1.0
4,665,038	-		GFF4667	0.32	-2.8
4,665,038	-		GFF4667	0.32	-0.7
4,665,038	-		GFF4667	0.32	-0.5
4,665,038	-		GFF4667	0.32	-1.4
4,665,038	-		GFF4667	0.32	-1.0
4,665,054	+		GFF4667	0.33	-2.4
4,665,054	+		GFF4667	0.33	-1.3
4,665,054	+		GFF4667	0.33	-1.5
4,665,070	+		GFF4667	0.35	+1.6
4,665,094	+		GFF4667	0.37	+0.8
4,665,094	+		GFF4667	0.37	+0.5
4,665,094	+		GFF4667	0.37	+0.5
4,665,095	-		GFF4667	0.37	-0.0
4,665,102	-		GFF4667	0.37	-0.0
4,665,102	-		GFF4667	0.37	+1.5
4,665,102	-		GFF4667	0.37	-0.7
4,665,106	+		GFF4667	0.37	-0.3
4,665,106	+		GFF4667	0.37	+0.2
4,665,120	-		GFF4667	0.39	+0.4
4,665,127	+		GFF4667	0.39	-0.1
4,665,127	+		GFF4667	0.39	+0.5
4,665,127	+		GFF4667	0.39	+0.5
4,665,127	+		GFF4667	0.39	-0.6
4,665,127	+		GFF4667	0.39	+1.4
4,665,127	+		GFF4667	0.39	-0.7
4,665,127	+		GFF4667	0.39	-1.1
4,665,127	+		GFF4667	0.39	-0.1
4,665,127	+		GFF4667	0.39	+0.4
4,665,127	+		GFF4667	0.39	+1.1
4,665,127	+		GFF4667	0.39	+1.1
4,665,135	-		GFF4667	0.40	-0.1
4,665,135	-		GFF4667	0.40	+0.5
4,665,135	-		GFF4667	0.40	+0.0
4,665,135	-		GFF4667	0.40	+0.3
4,665,135	-		GFF4667	0.40	-1.3
4,665,135	-		GFF4667	0.40	+0.1
4,665,135	-		GFF4667	0.40	+1.1
4,665,135	-		GFF4667	0.40	+0.2
4,665,135	-		GFF4667	0.40	-1.0
4,665,146	+		GFF4667	0.41	+0.1
4,665,153	+		GFF4667	0.41	+0.3
4,665,153	+		GFF4667	0.41	+0.3
4,665,161	-		GFF4667	0.42	-1.3
4,665,168	-		GFF4667	0.43	+0.3
4,665,175	-		GFF4667	0.43	+1.1
4,665,182	-		GFF4667	0.44	-1.0
4,665,207	+		GFF4667	0.46	-1.9
4,665,212	+		GFF4667	0.46	-0.1
4,665,219	+		GFF4667	0.47	+0.5
4,665,222	+		GFF4667	0.47	+0.4
4,665,228	+		GFF4667	0.47	+0.0
4,665,228	+		GFF4667	0.47	+0.0
4,665,230	-		GFF4667	0.48	+1.5
4,665,240	+		GFF4667	0.48	+0.7
4,665,240	+		GFF4667	0.48	+0.6
4,665,240	+		GFF4667	0.48	+1.0
4,665,240	+		GFF4667	0.48	-1.0
4,665,241	-		GFF4667	0.48	-0.6
4,665,243	-		GFF4667	0.49	+0.0
4,665,248	-		GFF4667	0.49	+0.3
4,665,248	-		GFF4667	0.49	+1.4
4,665,248	-		GFF4667	0.49	+0.7
4,665,258	-		GFF4667	0.50	+0.1
4,665,258	-		GFF4667	0.50	+0.1
4,665,284	-		GFF4667	0.52	+0.3
4,665,304	-		GFF4667	0.54	+0.4
4,665,317	-		GFF4667	0.55	-0.1
4,665,332	+		GFF4667	0.56	-0.3
4,665,349	+		GFF4667	0.57	+1.5
4,665,386	+		GFF4667	0.60	+0.3
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4,665,453	-		GFF4667	0.66	-1.8
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4,665,556	-		GFF4667	0.74	+1.1
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4,665,678	+		GFF4667	0.84	-1.3
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4,665,688	+		GFF4667	0.85	-2.2
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4,665,710	-		GFF4667	0.87	+0.1
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4,665,754	-				+1.2
4,665,761	+				-2.5
4,665,761	+				+0.3
4,665,761	+				+0.4
4,665,761	+				+1.4
4,665,761	+				+0.6
4,665,761	+				-0.1
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4,665,761	+				-0.1
4,665,761	+				-0.1
4,665,761	+				-0.9
4,665,761	+				-1.1
4,665,761	+				+1.4
4,665,761	+				-0.3
4,665,762	-				+0.4
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4,665,769	+				+0.4
4,665,769	-				+0.9
4,665,769	-				-0.5
4,665,769	-				-0.9
4,665,769	-				+0.8
4,665,769	-				+1.6
4,665,769	-				-0.0
4,665,769	-				-0.5
4,665,769	-				-0.7
4,665,769	-				-0.4
4,665,769	-				+0.7
4,665,769	-				-0.3
4,665,769	-				-1.3
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4,665,769	-				+0.2
4,665,769	-				+0.2
4,665,777	-				-1.6
4,665,777	-				-0.3
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4,665,830	-				+1.0
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4,665,835	-				+1.1
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4,665,835	-				+0.1
4,665,835	-				+0.9
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4,665,840	-				-0.3
4,665,840	-				-0.1
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4,665,845	-				-1.0
4,665,845	-				-0.7
4,665,845	-				-0.4
4,665,845	-				-2.5
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4,665,963	-				-1.9
4,665,976	+				-0.8
4,665,976	+				+0.5
4,665,977	-				+0.7
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4,666,058	+		GFF4668	0.35	-2.0
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4,666,058	+		GFF4668	0.35	-0.6
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4,666,058	+		GFF4668	0.35	+1.2
4,666,058	+		GFF4668	0.35	-0.1
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4,666,066	-		GFF4668	0.37	+0.7
4,666,066	-		GFF4668	0.37	-0.1
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4,666,066	-		GFF4668	0.37	+0.1
4,666,066	-		GFF4668	0.37	-1.3
4,666,066	-		GFF4668	0.37	+1.1
4,666,066	-		GFF4668	0.37	+0.8
4,666,069	+		GFF4668	0.38	-0.1
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4,666,106	-		GFF4668	0.50	+1.7
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4,666,242	-				+1.3
4,666,251	+				-0.3
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4,666,331	-				+0.0
4,666,331	-				+1.0
4,666,335	+				-0.3
4,666,342	+				-1.6
4,666,345	+				-1.8
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4,666,419	-		GFF4669	0.14	+1.3
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4,666,655	-				+0.6
4,666,685	-				+0.5
4,666,724	-				-0.7
4,666,757	+		GFF4670	0.26	+1.0
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4,666,852	+		GFF4670	0.73	-2.2
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