Strain Fitness in Sphingobium sp. HT1-2 around GFF4640

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,640,427	-		GFF4639	0.44	-2.4
4,640,468	-		GFF4639	0.47	-1.8
4,640,515	+		GFF4639	0.50	+0.3
4,640,519	-		GFF4639	0.50	-0.5
4,640,520	+		GFF4639	0.50	-0.3
4,640,535	+		GFF4639	0.51	-2.1
4,640,540	+		GFF4639	0.51	+0.1
4,640,546	+		GFF4639	0.52	-1.7
4,640,548	-		GFF4639	0.52	-0.5
4,640,548	-		GFF4639	0.52	+1.0
4,640,548	-		GFF4639	0.52	-0.6
4,640,548	-		GFF4639	0.52	+0.8
4,640,548	-		GFF4639	0.52	-1.4
4,640,548	-		GFF4639	0.52	-1.3
4,640,563	+		GFF4639	0.53	-2.8
4,640,565	+		GFF4639	0.53	-0.5
4,640,573	-		GFF4639	0.53	-1.9
4,640,575	+		GFF4639	0.53	+0.5
4,640,592	-		GFF4639	0.55	-1.3
4,640,621	+		GFF4639	0.56	+0.3
4,640,656	+		GFF4639	0.58	-1.7
4,640,682	-		GFF4639	0.60	+1.3
4,640,684	+		GFF4639	0.60	+0.5
4,640,687	-		GFF4639	0.60	+0.7
4,640,704	+		GFF4639	0.61	-1.6
4,640,718	+		GFF4639	0.62	-0.1
4,640,720	+		GFF4639	0.62	+1.6
4,640,722	-		GFF4639	0.62	-1.6
4,640,726	-		GFF4639	0.63	-2.8
4,640,728	-		GFF4639	0.63	-0.7
4,640,755	+		GFF4639	0.65	-0.7
4,640,761	+		GFF4639	0.65	-1.7
4,640,761	+		GFF4639	0.65	+0.6
4,640,761	+		GFF4639	0.65	+0.0
4,640,761	+		GFF4639	0.65	-1.8
4,640,761	+		GFF4639	0.65	-1.1
4,640,769	+		GFF4639	0.65	+0.1
4,640,769	-		GFF4639	0.65	-1.1
4,640,769	-		GFF4639	0.65	-0.2
4,640,769	-		GFF4639	0.65	+1.4
4,640,769	-		GFF4639	0.65	+0.6
4,640,769	-		GFF4639	0.65	-1.0
4,640,784	+		GFF4639	0.66	-0.9
4,640,785	+		GFF4639	0.66	+0.1
4,640,787	-		GFF4639	0.66	-1.8
4,640,789	-		GFF4639	0.67	-0.5
4,640,793	-		GFF4639	0.67	-0.7
4,640,827	+		GFF4639	0.69	-2.4
4,640,854	-		GFF4639	0.71	-0.8
4,640,871	-		GFF4639	0.72	-1.8
4,640,876	+		GFF4639	0.72	-0.1
4,640,876	+		GFF4639	0.72	+0.4
4,640,880	+		GFF4639	0.72	-0.6
4,640,887	+		GFF4639	0.73	-1.0
4,640,895	-		GFF4639	0.73	+0.2
4,640,907	-		GFF4639	0.74	-0.1
4,640,911	-		GFF4639	0.74	-0.5
4,640,912	+		GFF4639	0.74	+1.0
4,640,925	-		GFF4639	0.75	-1.4
4,640,932	+		GFF4639	0.75	-0.6
4,640,963	+		GFF4639	0.77	-1.7
4,640,977	+		GFF4639	0.78	-0.7
4,640,977	+		GFF4639	0.78	+0.2
4,640,985	-		GFF4639	0.79	-1.6
4,641,004	-		GFF4639	0.80	-1.6
4,641,011	-		GFF4639	0.80	-0.1
4,641,021	+		GFF4639	0.81	-1.0
4,641,021	+		GFF4639	0.81	-1.4
4,641,021	+		GFF4639	0.81	-0.8
4,641,029	-		GFF4639	0.81	-0.4
4,641,052	-		GFF4639	0.83	+0.2
4,641,100	+		GFF4639	0.86	-0.5
4,641,100	+		GFF4639	0.86	-0.8
4,641,100	+		GFF4639	0.86	-1.3
4,641,100	+		GFF4639	0.86	-0.6
4,641,108	-		GFF4639	0.86	+1.1
4,641,108	-		GFF4639	0.86	-0.7
4,641,133	-		GFF4639	0.88	-0.6
4,641,149	+		GFF4639	0.89	-0.9
4,641,157	-		GFF4639	0.89	-0.5
4,641,159	+		GFF4639	0.89	+0.2
4,641,161	-		GFF4639	0.89	+0.4
4,641,166	+		GFF4639	0.90	-0.3
4,641,197	+				-0.3
4,641,239	+				-1.5
4,641,239	+				-2.1
4,641,247	-				-1.2
4,641,247	-				-0.1
4,641,249	-				+0.6
4,641,251	+				-1.3
4,641,251	+				-0.5
4,641,251	+				-0.6
4,641,259	-				-0.2
4,641,282	+				-1.0
4,641,287	+				+0.8
4,641,327	+				+0.9
4,641,327	-				+0.4
4,641,343	-				-0.5
4,641,363	+				-0.1
4,641,384	+				+0.4
4,641,390	-				-1.2
4,641,398	+				-0.9
4,641,398	+				-2.2
4,641,416	+				+0.7
4,641,416	+				+0.2
4,641,416	+				-0.6
4,641,416	+				+0.8
4,641,416	+				+1.0
4,641,416	+				-2.5
4,641,416	+				-0.9
4,641,416	+				-1.5
4,641,420	+				+0.1
4,641,424	-				-0.9
4,641,424	-				-0.3
4,641,424	-				-1.1
4,641,424	-				-1.5
4,641,424	-				+0.0
4,641,424	-				-0.5
4,641,424	-				-2.3
4,641,424	-				+0.0
4,641,426	+		GFF4640	0.10	-1.9
4,641,442	-		GFF4640	0.14	+0.7
4,641,452	-		GFF4640	0.16	-0.1
4,641,459	+		GFF4640	0.18	-0.6
4,641,467	-		GFF4640	0.19	-0.2
4,641,467	-		GFF4640	0.19	+0.6
4,641,473	+		GFF4640	0.21	+0.3
4,641,481	-		GFF4640	0.23	-2.5
4,641,485	-		GFF4640	0.24	-2.3
4,641,487	+		GFF4640	0.24	+1.2
4,641,544	+		GFF4640	0.37	+0.1
4,641,558	+		GFF4640	0.40	-2.3
4,641,625	+		GFF4640	0.55	-1.5
4,641,625	+		GFF4640	0.55	+0.1
4,641,626	-		GFF4640	0.56	-0.9
4,641,633	-		GFF4640	0.57	+0.4
4,641,633	-		GFF4640	0.57	-1.7
4,641,633	-		GFF4640	0.57	+2.3
4,641,633	-		GFF4640	0.57	+1.4
4,641,633	-		GFF4640	0.57	-0.9
4,641,648	-		GFF4640	0.61	+0.3
4,641,648	-		GFF4640	0.61	-0.1
4,641,702	+		GFF4640	0.73	-0.9
4,641,718	+		GFF4640	0.77	+0.3
4,641,733	-		GFF4640	0.80	-2.1
4,641,750	+		GFF4640	0.84	-0.7
4,641,750	+		GFF4640	0.84	-1.7
4,641,758	-		GFF4640	0.86	+0.2
4,641,779	+				+0.5
4,641,782	-				+0.6
4,641,784	+				+0.3
4,641,787	-				-1.4
4,641,806	+				+0.7
4,641,808	+				+1.8
4,641,808	+				+0.1
4,641,813	+				-2.4
4,641,814	-				+0.3
4,641,816	-				-0.3
4,641,816	-				+1.0
4,641,818	+				-1.3
4,641,818	+				+0.4
4,641,818	+				+0.8
4,641,818	+				-0.6
4,641,826	-				+0.5
4,641,885	+				-2.1
4,641,885	+				+0.2
4,641,898	+				-0.3
4,641,910	+				-0.4
4,641,911	+				-0.7
4,641,918	-				+0.3
4,641,919	-				-1.7
4,641,923	+				+0.8
4,641,951	-				-0.1
4,641,957	+				-1.3
4,641,965	-				-0.1
4,641,991	+		GFF4641	0.13	+1.2
4,641,991	+		GFF4641	0.13	-0.5
4,641,991	+		GFF4641	0.13	-0.1
4,641,991	+		GFF4641	0.13	-2.7
4,641,991	+		GFF4641	0.13	-0.3
4,641,991	+		GFF4641	0.13	-0.6
4,641,991	+		GFF4641	0.13	+0.7
4,641,991	+		GFF4641	0.13	+1.5
4,641,991	+		GFF4641	0.13	-0.2
4,641,991	+		GFF4641	0.13	+1.1
4,641,991	+		GFF4641	0.13	-2.5
4,641,991	+		GFF4641	0.13	-2.6
4,641,991	+		GFF4641	0.13	+0.0
4,641,991	+		GFF4641	0.13	-2.5
4,641,991	+		GFF4641	0.13	+0.2
4,641,991	+		GFF4641	0.13	+0.7
4,641,991	+		GFF4641	0.13	-0.4
4,641,991	+		GFF4641	0.13	+0.2
4,641,991	+		GFF4641	0.13	-0.3
4,641,991	+		GFF4641	0.13	-0.3
4,641,991	+		GFF4641	0.13	-2.2
4,641,991	+		GFF4641	0.13	+1.3
4,641,993	-		GFF4641	0.13	-0.1
4,641,999	-		GFF4641	0.14	-1.8
4,641,999	-		GFF4641	0.14	-0.5
4,641,999	-		GFF4641	0.14	-0.4
4,641,999	-		GFF4641	0.14	-0.0
4,641,999	-		GFF4641	0.14	-0.1
4,641,999	-		GFF4641	0.14	-0.3
4,641,999	-		GFF4641	0.14	-0.1
4,641,999	-		GFF4641	0.14	-0.0
4,641,999	-		GFF4641	0.14	+0.5
4,641,999	-		GFF4641	0.14	+1.1
4,641,999	-		GFF4641	0.14	-0.8
4,641,999	-		GFF4641	0.14	+0.3
4,642,013	-		GFF4641	0.16	-1.7
4,642,023	+		GFF4641	0.17	-0.3
4,642,026	-		GFF4641	0.17	-1.3
4,642,026	-		GFF4641	0.17	-0.1
4,642,045	+		GFF4641	0.20	+1.0
4,642,048	-		GFF4641	0.20	+0.1
4,642,061	-		GFF4641	0.22	-0.8
4,642,061	-		GFF4641	0.22	-0.7
4,642,099	-		GFF4641	0.27	+0.2
4,642,110	+		GFF4641	0.28	-2.0
4,642,136	-		GFF4641	0.31	+0.8
4,642,141	-		GFF4641	0.32	+0.4
4,642,142	+		GFF4641	0.32	-1.5
4,642,142	+		GFF4641	0.32	-0.4
4,642,150	-		GFF4641	0.33	-1.2
4,642,150	-		GFF4641	0.33	-1.3
4,642,150	-		GFF4641	0.33	+0.3
4,642,150	-		GFF4641	0.33	-1.6
4,642,150	-		GFF4641	0.33	-0.8
4,642,171	-		GFF4641	0.36	-0.7
4,642,171	-		GFF4641	0.36	-1.3
4,642,172	+		GFF4641	0.36	-1.5
4,642,173	+		GFF4641	0.36	+0.1
4,642,173	+		GFF4641	0.36	-1.3
4,642,181	-		GFF4641	0.37	+0.8
4,642,181	-		GFF4641	0.37	-1.1
4,642,181	-		GFF4641	0.37	-1.7
4,642,186	-		GFF4641	0.38	+0.7
4,642,206	-		GFF4641	0.40	-0.1
4,642,206	-		GFF4641	0.40	-0.7
4,642,206	-		GFF4641	0.40	-2.5
4,642,231	+		GFF4641	0.43	-1.7
4,642,240	-		GFF4641	0.45	+0.2
4,642,276	-		GFF4641	0.49	-1.5
4,642,281	+		GFF4641	0.50	-0.3
4,642,281	+		GFF4641	0.50	+1.0
4,642,286	+		GFF4641	0.50	-0.8
4,642,294	-		GFF4641	0.51	-0.4
4,642,294	-		GFF4641	0.51	+0.6
4,642,299	-		GFF4641	0.52	+1.0
4,642,346	-		GFF4641	0.58	+0.1
4,642,346	-		GFF4641	0.58	-0.6
4,642,381	+		GFF4641	0.62	+1.2
4,642,381	+		GFF4641	0.62	-1.2
4,642,381	+		GFF4641	0.62	+0.3
4,642,382	-		GFF4641	0.63	-0.3
4,642,400	+		GFF4641	0.65	+0.7
4,642,458	+		GFF4641	0.72	-0.5
4,642,458	+		GFF4641	0.72	-1.5
4,642,458	+		GFF4641	0.72	-1.1
4,642,458	+		GFF4641	0.72	-0.0
4,642,463	+		GFF4641	0.73	+1.2
4,642,463	+		GFF4641	0.73	-0.1
4,642,463	+		GFF4641	0.73	-1.5
4,642,463	+		GFF4641	0.73	-1.5
4,642,463	+		GFF4641	0.73	-0.8
4,642,463	+		GFF4641	0.73	-0.3
4,642,463	+		GFF4641	0.73	-0.5
4,642,463	+		GFF4641	0.73	-1.8
4,642,463	+		GFF4641	0.73	+0.4
4,642,463	+		GFF4641	0.73	-0.0
4,642,463	+		GFF4641	0.73	-0.6
4,642,463	+		GFF4641	0.73	-0.6
4,642,463	+		GFF4641	0.73	+0.4
4,642,466	-		GFF4641	0.73	+1.0
4,642,468	+		GFF4641	0.74	-2.1
4,642,468	+		GFF4641	0.74	-0.4
4,642,471	-		GFF4641	0.74	-1.6
4,642,471	-		GFF4641	0.74	-0.6
4,642,471	-		GFF4641	0.74	-1.5
4,642,471	-		GFF4641	0.74	-0.4
4,642,471	-		GFF4641	0.74	-0.0
4,642,471	-		GFF4641	0.74	+0.1
4,642,471	-		GFF4641	0.74	+0.9
4,642,476	-		GFF4641	0.75	+0.0
4,642,478	+		GFF4641	0.75	+0.3
4,642,499	+		GFF4641	0.77	-1.1
4,642,499	+		GFF4641	0.77	-1.0
4,642,499	+		GFF4641	0.77	-1.3
4,642,499	+		GFF4641	0.77	-1.5
4,642,499	+		GFF4641	0.77	-0.6
4,642,499	+		GFF4641	0.77	-0.1
4,642,507	-		GFF4641	0.78	+0.2
4,642,507	-		GFF4641	0.78	-0.9
4,642,507	-		GFF4641	0.78	+0.8
4,642,507	-		GFF4641	0.78	+0.3
4,642,507	-		GFF4641	0.78	-0.8
4,642,509	+		GFF4641	0.79	-1.3
4,642,509	+		GFF4641	0.79	-0.1
4,642,509	+		GFF4641	0.79	+0.7
4,642,509	+		GFF4641	0.79	-0.8
4,642,509	+		GFF4641	0.79	-1.9
4,642,514	+		GFF4641	0.79	-2.6
4,642,524	-		GFF4641	0.81	-0.2
4,642,534	-		GFF4641	0.82	-0.4
4,642,537	-		GFF4641	0.82	+1.1
4,642,554	+		GFF4641	0.84	-0.5
4,642,556	+		GFF4641	0.85	+0.1
4,642,569	+		GFF4641	0.86	+0.9
4,642,572	+		GFF4641	0.87	-2.1
4,642,572	+		GFF4641	0.87	+1.5
4,642,591	+		GFF4641	0.89	-0.9
4,642,683	-				+0.3
4,642,688	+				+0.1
4,642,688	-				-0.8
4,642,705	+				-0.4
4,642,705	+				-0.4
4,642,705	+				-2.9
4,642,705	+				-1.1
4,642,705	+				+0.3
4,642,705	+				-0.7
4,642,705	+				+1.4
4,642,705	+				+1.1
4,642,705	+				+0.1
4,642,711	-				+0.2
4,642,711	-				-1.1
4,642,711	-				+0.5
4,642,711	-				-1.3
4,642,713	-				+0.3
4,642,713	-				-0.5
4,642,740	+				-0.5
4,642,780	+		GFF4642	0.19	+1.4
4,642,780	+		GFF4642	0.19	-0.9
4,642,780	+		GFF4642	0.19	-0.9
4,642,780	+		GFF4642	0.19	-0.8
4,642,780	+		GFF4642	0.19	-1.2
4,642,780	+		GFF4642	0.19	-1.8
4,642,781	-		GFF4642	0.19	-0.6
4,642,788	-		GFF4642	0.21	-0.7
4,642,793	-		GFF4642	0.22	+0.2