Strain Fitness in Sphingobium sp. HT1-2 around GFF4600

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,591,189	-		GFF4599	0.23	-0.7
4,591,201	+		GFF4599	0.24	+0.2
4,591,206	+		GFF4599	0.25	+1.8
4,591,209	-		GFF4599	0.25	+1.4
4,591,209	-		GFF4599	0.25	-1.0
4,591,224	+		GFF4599	0.26	-0.9
4,591,224	+		GFF4599	0.26	+0.3
4,591,231	+		GFF4599	0.27	-1.3
4,591,231	+		GFF4599	0.27	-0.9
4,591,231	+		GFF4599	0.27	-0.3
4,591,231	+		GFF4599	0.27	-1.9
4,591,239	-		GFF4599	0.27	-2.3
4,591,275	-		GFF4599	0.30	-0.4
4,591,283	+		GFF4599	0.31	+1.0
4,591,323	-		GFF4599	0.34	-2.3
4,591,323	-		GFF4599	0.34	+0.1
4,591,323	-		GFF4599	0.34	+0.6
4,591,323	-		GFF4599	0.34	+0.4
4,591,323	-		GFF4599	0.34	+0.7
4,591,328	-		GFF4599	0.34	-0.8
4,591,364	+		GFF4599	0.37	-0.1
4,591,372	-		GFF4599	0.38	+1.5
4,591,382	-		GFF4599	0.39	-1.6
4,591,409	+		GFF4599	0.41	+0.0
4,591,409	+		GFF4599	0.41	+0.3
4,591,409	+		GFF4599	0.41	+0.3
4,591,417	-		GFF4599	0.42	-0.5
4,591,417	-		GFF4599	0.42	+0.8
4,591,434	-		GFF4599	0.43	-0.4
4,591,447	+		GFF4599	0.44	-2.3
4,591,455	-		GFF4599	0.45	+0.8
4,591,490	+		GFF4599	0.48	-0.8
4,591,496	+		GFF4599	0.48	+1.0
4,591,498	-		GFF4599	0.48	-0.7
4,591,541	-		GFF4599	0.52	-0.7
4,591,546	-		GFF4599	0.52	+0.1
4,591,576	+		GFF4599	0.54	-0.6
4,591,603	-		GFF4599	0.57	-1.0
4,591,628	+		GFF4599	0.59	-0.9
4,591,657	-		GFF4599	0.61	+0.6
4,591,662	-		GFF4599	0.61	-1.0
4,591,680	-		GFF4599	0.63	-0.5
4,591,689	+		GFF4599	0.64	-0.9
4,591,690	+		GFF4599	0.64	-0.7
4,591,695	-		GFF4599	0.64	-0.2
4,591,697	-		GFF4599	0.64	+1.1
4,591,724	-		GFF4599	0.66	-0.0
4,591,737	-		GFF4599	0.67	-1.5
4,591,747	-		GFF4599	0.68	-1.1
4,591,747	-		GFF4599	0.68	+0.2
4,591,763	+		GFF4599	0.69	+0.6
4,591,770	+		GFF4599	0.70	-0.4
4,591,771	-		GFF4599	0.70	+0.5
4,591,860	+		GFF4599	0.77	-0.1
4,591,868	+		GFF4599	0.78	-0.0
4,591,868	+		GFF4599	0.78	+1.6
4,591,909	-		GFF4599	0.81	-0.1
4,591,959	-		GFF4599	0.85	-1.8
4,591,961	+		GFF4599	0.85	-0.6
4,591,979	+		GFF4599	0.87	+1.4
4,591,987	-		GFF4599	0.88	-0.5
4,591,987	-		GFF4599	0.88	-1.2
4,592,046	-				+0.2
4,592,071	-				-2.8
4,592,086	+				+0.1
4,592,089	+				-1.2
4,592,089	+				-0.4
4,592,095	+				+0.4
4,592,103	-				+1.3
4,592,143	-				-1.1
4,592,184	+				-1.3
4,592,192	-				-0.3
4,592,198	+				-1.2
4,592,250	+				+0.9
4,592,370	+		GFF4600	0.16	-1.6
4,592,377	+		GFF4600	0.17	-1.3
4,592,418	-		GFF4600	0.20	-0.3
4,592,418	-		GFF4600	0.20	-2.8
4,592,442	-		GFF4600	0.22	-0.1
4,592,490	+		GFF4600	0.26	+0.6
4,592,501	-		GFF4600	0.27	+0.5
4,592,529	-		GFF4600	0.30	-2.7
4,592,550	+		GFF4600	0.32	-0.8
4,592,554	-		GFF4600	0.32	+0.7
4,592,571	-		GFF4600	0.34	-0.3
4,592,601	-		GFF4600	0.36	-0.1
4,592,602	-		GFF4600	0.36	-0.2
4,592,604	+		GFF4600	0.36	+0.7
4,592,604	+		GFF4600	0.36	-0.6
4,592,604	+		GFF4600	0.36	+0.3
4,592,604	+		GFF4600	0.36	-2.4
4,592,604	+		GFF4600	0.36	-0.7
4,592,604	+		GFF4600	0.36	-0.1
4,592,604	+		GFF4600	0.36	-0.3
4,592,604	+		GFF4600	0.36	-0.7
4,592,604	+		GFF4600	0.36	-0.8
4,592,604	+		GFF4600	0.36	-0.2
4,592,609	+		GFF4600	0.37	+1.3
4,592,609	+		GFF4600	0.37	-0.9
4,592,609	+		GFF4600	0.37	-0.7
4,592,612	-		GFF4600	0.37	-1.3
4,592,612	-		GFF4600	0.37	-1.0
4,592,612	-		GFF4600	0.37	-0.8
4,592,612	-		GFF4600	0.37	+0.3
4,592,612	-		GFF4600	0.37	+0.4
4,592,612	-		GFF4600	0.37	-2.7
4,592,612	-		GFF4600	0.37	-3.1
4,592,612	-		GFF4600	0.37	+0.6
4,592,612	-		GFF4600	0.37	-1.9
4,592,612	-		GFF4600	0.37	+0.3
4,592,612	-		GFF4600	0.37	+0.1
4,592,612	-		GFF4600	0.37	-2.3
4,592,617	-		GFF4600	0.38	+0.1
4,592,624	+		GFF4600	0.38	-1.4
4,592,658	-		GFF4600	0.41	-0.5
4,592,681	+		GFF4600	0.43	-0.1
4,592,689	+		GFF4600	0.44	-0.2
4,592,689	-		GFF4600	0.44	-1.3
4,592,758	+		GFF4600	0.50	-0.1
4,592,766	-		GFF4600	0.50	+0.4
4,592,773	+		GFF4600	0.51	-0.3
4,592,774	-		GFF4600	0.51	-0.7
4,592,774	-		GFF4600	0.51	-0.7
4,592,779	-		GFF4600	0.52	+0.2
4,592,783	+		GFF4600	0.52	-1.2
4,592,791	+		GFF4600	0.53	-0.0
4,592,791	-		GFF4600	0.53	-1.3
4,592,796	+		GFF4600	0.53	-1.7
4,592,806	-		GFF4600	0.54	-1.9
4,592,866	+		GFF4600	0.59	-0.8
4,592,874	-		GFF4600	0.60	+0.1
4,592,942	-		GFF4600	0.66	-1.3
4,592,945	+		GFF4600	0.66	-0.5
4,592,970	+		GFF4600	0.68	-0.5
4,592,992	+		GFF4600	0.70	-0.1
4,592,992	+		GFF4600	0.70	-1.1
4,592,995	-		GFF4600	0.70	-0.6
4,593,000	-		GFF4600	0.71	-0.9
4,593,000	-		GFF4600	0.71	-0.8
4,593,006	-		GFF4600	0.71	-0.2
4,593,012	-		GFF4600	0.72	+1.1
4,593,037	-		GFF4600	0.74	+0.7
4,593,076	+		GFF4600	0.77	-0.8
4,593,084	-		GFF4600	0.78	+0.6
4,593,089	-		GFF4600	0.79	+1.1
4,593,093	+		GFF4600	0.79	-0.1
4,593,093	+		GFF4600	0.79	+0.4
4,593,128	-		GFF4600	0.82	-0.7
4,593,128	-		GFF4600	0.82	+1.4
4,593,128	-		GFF4600	0.82	-0.3
4,593,140	+		GFF4600	0.83	-0.9
4,593,140	+		GFF4600	0.83	-1.3
4,593,145	+		GFF4600	0.83	+0.8
4,593,145	+		GFF4600	0.83	-0.3
4,593,148	-		GFF4600	0.84	-0.0
4,593,148	-		GFF4600	0.84	-2.4
4,593,159	+		GFF4600	0.85	+0.3
4,593,172	-		GFF4600	0.86	-0.0
4,593,177	+		GFF4600	0.86	-0.4
4,593,188	+		GFF4600	0.87	+0.4
4,593,188	+		GFF4600	0.87	-0.6
4,593,218	-		GFF4600	0.90	-1.3
4,593,231	+				-2.9
4,593,234	+				-2.6
4,593,242	-				+0.0
4,593,337	+				-0.4
4,593,345	-				-0.0
4,593,345	-				+1.0
4,593,388	-				-1.6
4,593,437	-				-0.4
4,593,471	-				-0.5
4,593,495	+				-0.0
4,593,495	+				-1.3
4,593,495	+				-0.2
4,593,495	+				-0.8
4,593,505	+				-0.2
4,593,539	+		GFF4601	0.12	-2.4
4,593,540	-		GFF4601	0.12	-1.1
4,593,549	+		GFF4601	0.13	-0.3
4,593,549	+		GFF4601	0.13	-0.2
4,593,560	-		GFF4601	0.13	-0.0
4,593,585	+		GFF4601	0.15	-0.6
4,593,585	+		GFF4601	0.15	-0.0
4,593,600	+		GFF4601	0.16	-0.0
4,593,600	+		GFF4601	0.16	+0.6
4,593,600	+		GFF4601	0.16	+2.3
4,593,600	+		GFF4601	0.16	+0.9
4,593,600	+		GFF4601	0.16	-0.5
4,593,600	+		GFF4601	0.16	-0.9
4,593,600	+		GFF4601	0.16	-0.8
4,593,600	+		GFF4601	0.16	+0.1
4,593,600	+		GFF4601	0.16	-0.0
4,593,608	-		GFF4601	0.16	-0.7
4,593,608	-		GFF4601	0.16	-1.0
4,593,608	-		GFF4601	0.16	-0.7
4,593,608	-		GFF4601	0.16	-1.7
4,593,608	-		GFF4601	0.16	-1.0
4,593,608	-		GFF4601	0.16	+1.1
4,593,608	-		GFF4601	0.16	-0.3
4,593,616	+		GFF4601	0.17	-1.0
4,593,616	+		GFF4601	0.17	-0.4
4,593,618	-		GFF4601	0.17	-1.0
4,593,624	-		GFF4601	0.17	+1.4
4,593,624	-		GFF4601	0.17	-0.9
4,593,626	+		GFF4601	0.17	-1.0
4,593,715	+		GFF4601	0.23	+2.1
4,593,742	-		GFF4601	0.25	+0.1
4,593,847	-		GFF4601	0.31	-0.3
4,593,902	+		GFF4601	0.35	-1.4
4,593,902	+		GFF4601	0.35	+0.8
4,593,910	-		GFF4601	0.35	-0.1
4,593,910	-		GFF4601	0.35	-0.2
4,593,910	-		GFF4601	0.35	-0.3
4,593,910	-		GFF4601	0.35	+0.2
4,593,910	-		GFF4601	0.35	+0.7
4,593,912	+		GFF4601	0.35	+0.8
4,593,929	+		GFF4601	0.37	-0.1
4,593,932	-		GFF4601	0.37	+0.6
4,593,937	-		GFF4601	0.37	-0.9
4,593,937	-		GFF4601	0.37	+0.6
4,593,937	-		GFF4601	0.37	-1.7
4,593,947	-		GFF4601	0.38	-0.3
4,593,947	-		GFF4601	0.38	+0.5
4,594,000	+		GFF4601	0.41	-1.2
4,594,000	+		GFF4601	0.41	-0.1
4,594,008	-		GFF4601	0.42	-0.2
4,594,008	-		GFF4601	0.42	+0.6
4,594,008	-		GFF4601	0.42	+0.1
4,594,008	-		GFF4601	0.42	-0.2
4,594,008	-		GFF4601	0.42	-0.1
4,594,130	-		GFF4601	0.49	-0.3
4,594,140	-		GFF4601	0.50	-1.0
4,594,152	+		GFF4601	0.51	-1.3
4,594,152	+		GFF4601	0.51	+1.1
4,594,166	+		GFF4601	0.52	+0.7
4,594,174	-		GFF4601	0.52	-0.1
4,594,202	+		GFF4601	0.54	-1.0
4,594,218	-		GFF4601	0.55	-0.4
4,594,227	-		GFF4601	0.55	+1.4
4,594,279	-		GFF4601	0.59	-0.2
4,594,284	-		GFF4601	0.59	+1.7
4,594,304	+		GFF4601	0.60	+0.1
4,594,304	+		GFF4601	0.60	-0.6
4,594,308	+		GFF4601	0.61	+0.9
4,594,310	+		GFF4601	0.61	-0.9
4,594,316	-		GFF4601	0.61	+0.4