Strain Fitness in Sphingobium sp. HT1-2 around GFF4477

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,470,450	-		GFF4476	0.33	-0.4
4,470,472	-		GFF4476	0.34	+0.1
4,470,474	+		GFF4476	0.35	+1.2
4,470,487	+		GFF4476	0.35	+0.6
4,470,487	+		GFF4476	0.35	-1.2
4,470,487	+		GFF4476	0.35	+0.2
4,470,528	-		GFF4476	0.38	+0.4
4,470,533	-		GFF4476	0.38	-0.1
4,470,546	+		GFF4476	0.39	+0.6
4,470,548	+		GFF4476	0.39	+1.8
4,470,548	+		GFF4476	0.39	+0.6
4,470,548	+		GFF4476	0.39	-0.8
4,470,550	-		GFF4476	0.40	-0.8
4,470,556	+		GFF4476	0.40	-2.2
4,470,556	-		GFF4476	0.40	-0.2
4,470,568	+		GFF4476	0.41	-2.8
4,470,568	+		GFF4476	0.41	+1.3
4,470,568	+		GFF4476	0.41	-0.4
4,470,576	-		GFF4476	0.41	+0.3
4,470,618	+		GFF4476	0.44	+0.6
4,470,620	-		GFF4476	0.44	+1.3
4,470,647	-		GFF4476	0.46	-0.2
4,470,649	+		GFF4476	0.46	+0.7
4,470,651	+		GFF4476	0.46	+0.4
4,470,657	-		GFF4476	0.47	-1.6
4,470,657	-		GFF4476	0.47	+0.5
4,470,659	-		GFF4476	0.47	-0.2
4,470,659	-		GFF4476	0.47	-0.9
4,470,716	-		GFF4476	0.51	-0.4
4,470,727	-		GFF4476	0.51	+0.0
4,470,734	-		GFF4476	0.52	-0.7
4,470,734	-		GFF4476	0.52	-1.0
4,470,769	+		GFF4476	0.54	-0.1
4,470,769	-		GFF4476	0.54	+1.2
4,470,791	-		GFF4476	0.56	-0.5
4,470,818	+		GFF4476	0.58	+0.5
4,470,818	-		GFF4476	0.58	-0.4
4,470,826	-		GFF4476	0.58	+0.3
4,470,828	+		GFF4476	0.58	+0.1
4,470,859	+		GFF4476	0.60	+1.7
4,470,869	+		GFF4476	0.61	+1.1
4,470,881	+		GFF4476	0.62	-0.4
4,470,889	+		GFF4476	0.62	-1.3
4,470,889	+		GFF4476	0.62	+0.2
4,470,889	+		GFF4476	0.62	-0.2
4,470,889	+		GFF4476	0.62	+0.6
4,470,889	+		GFF4476	0.62	-0.1
4,470,889	+		GFF4476	0.62	+0.1
4,470,889	+		GFF4476	0.62	+1.2
4,470,889	+		GFF4476	0.62	+0.8
4,470,889	+		GFF4476	0.62	-1.6
4,470,897	-		GFF4476	0.63	-0.1
4,470,897	-		GFF4476	0.63	+1.0
4,470,897	-		GFF4476	0.63	-0.3
4,470,897	-		GFF4476	0.63	-1.7
4,470,897	-		GFF4476	0.63	+0.2
4,470,897	-		GFF4476	0.63	+0.9
4,470,897	-		GFF4476	0.63	-0.9
4,470,902	-		GFF4476	0.63	+0.2
4,470,949	+		GFF4476	0.66	-0.6
4,470,988	+		GFF4476	0.69	+1.0
4,470,991	-		GFF4476	0.69	+0.2
4,470,996	-		GFF4476	0.69	+0.8
4,470,996	-		GFF4476	0.69	+0.6
4,470,996	-		GFF4476	0.69	+1.1
4,471,014	+		GFF4476	0.71	-0.8
4,471,014	+		GFF4476	0.71	-0.5
4,471,014	+		GFF4476	0.71	+1.9
4,471,022	-		GFF4476	0.71	+0.4
4,471,036	-		GFF4476	0.72	+0.9
4,471,047	+		GFF4476	0.73	-0.3
4,471,055	-		GFF4476	0.73	+1.2
4,471,055	-		GFF4476	0.73	-0.3
4,471,073	+		GFF4476	0.75	+0.7
4,471,073	+		GFF4476	0.75	-0.1
4,471,073	+		GFF4476	0.75	+0.3
4,471,073	+		GFF4476	0.75	+0.6
4,471,073	+		GFF4476	0.75	+1.6
4,471,073	+		GFF4476	0.75	+0.4
4,471,073	+		GFF4476	0.75	-0.9
4,471,073	+		GFF4476	0.75	-0.3
4,471,081	-		GFF4476	0.75	-1.8
4,471,081	-		GFF4476	0.75	-0.1
4,471,081	-		GFF4476	0.75	-0.6
4,471,081	-		GFF4476	0.75	+1.4
4,471,081	-		GFF4476	0.75	+1.2
4,471,081	-		GFF4476	0.75	+2.0
4,471,097	+		GFF4476	0.76	+1.0
4,471,097	+		GFF4476	0.76	-1.0
4,471,097	+		GFF4476	0.76	+0.7
4,471,122	+		GFF4476	0.78	+1.1
4,471,138	-		GFF4476	0.79	+0.0
4,471,138	-		GFF4476	0.79	-2.2
4,471,138	-		GFF4476	0.79	+0.6
4,471,154	+		GFF4476	0.80	+0.4
4,471,154	+		GFF4476	0.80	-1.0
4,471,159	+		GFF4476	0.80	-0.8
4,471,162	-		GFF4476	0.81	+1.0
4,471,163	-		GFF4476	0.81	-0.7
4,471,180	+		GFF4476	0.82	-1.1
4,471,185	+		GFF4476	0.82	+0.3
4,471,195	-		GFF4476	0.83	-0.2
4,471,198	-		GFF4476	0.83	+0.7
4,471,198	-		GFF4476	0.83	-0.7
4,471,206	+		GFF4476	0.84	+1.0
4,471,209	-		GFF4476	0.84	+0.6
4,471,211	+		GFF4476	0.84	+1.8
4,471,211	+		GFF4476	0.84	+1.5
4,471,211	+		GFF4476	0.84	-0.9
4,471,211	+		GFF4476	0.84	+0.4
4,471,214	-		GFF4476	0.84	+0.7
4,471,219	-		GFF4476	0.84	+0.2
4,471,219	-		GFF4476	0.84	-0.8
4,471,229	-		GFF4476	0.85	+0.0
4,471,253	+		GFF4476	0.87	-2.6
4,471,253	+		GFF4476	0.87	-0.5
4,471,253	+		GFF4476	0.87	-0.2
4,471,253	+		GFF4476	0.87	-0.7
4,471,253	+		GFF4476	0.87	+0.3
4,471,253	+		GFF4476	0.87	+0.2
4,471,253	+		GFF4476	0.87	+0.6
4,471,253	+		GFF4476	0.87	-0.7
4,471,256	-		GFF4476	0.87	-0.1
4,471,261	-		GFF4476	0.87	+0.6
4,471,261	-		GFF4476	0.87	+0.6
4,471,261	-		GFF4476	0.87	+0.1
4,471,261	-		GFF4476	0.87	+0.8
4,471,261	-		GFF4476	0.87	+0.9
4,471,261	-		GFF4476	0.87	-0.8
4,471,261	-		GFF4476	0.87	+0.2
4,471,261	-		GFF4476	0.87	-0.8
4,471,261	-		GFF4476	0.87	-0.5
4,471,262	-		GFF4476	0.87	+0.3
4,471,271	+		GFF4476	0.88	+0.7
4,471,274	-		GFF4476	0.88	-0.7
4,471,279	-		GFF4476	0.88	+0.8
4,471,284	-		GFF4476	0.89	+0.5
4,471,341	+				+1.0
4,471,341	+				+1.0
4,471,351	+				-0.8
4,471,366	-				-0.8
4,471,385	-				+0.3
4,471,468	+				-1.7
4,471,476	-				+0.2
4,471,480	+				+0.3
4,471,480	+				-0.6
4,471,480	+				+1.0
4,471,488	-				-0.3
4,471,488	-				-0.4
4,471,505	+				+0.8
4,471,507	+				+0.7
4,471,512	-				+2.2
4,471,513	+				+0.8
4,471,515	-				+0.3
4,471,522	-				+0.1
4,471,523	+				+0.3
4,471,523	+				-0.8
4,471,523	+				+0.4
4,471,523	+				-0.4
4,471,528	+				+0.7
4,471,531	-				-0.9
4,471,531	-				-0.6
4,471,531	-				+1.2
4,471,531	-				+0.4
4,471,546	-				+0.4
4,471,551	-				-1.1
4,471,582	+		GFF4477	0.11	+0.6
4,471,582	+		GFF4477	0.11	+0.7
4,471,590	-		GFF4477	0.12	+0.0
4,471,603	+		GFF4477	0.13	+1.3
4,471,611	+		GFF4477	0.13	-0.1
4,471,636	+		GFF4477	0.15	+0.6
4,471,638	+		GFF4477	0.15	+0.9
4,471,638	+		GFF4477	0.15	+0.4
4,471,646	-		GFF4477	0.16	+0.9
4,471,646	-		GFF4477	0.16	-0.3
4,471,663	+		GFF4477	0.17	+1.5
4,471,671	+		GFF4477	0.18	-1.0
4,471,671	-		GFF4477	0.18	-0.3
4,471,682	-		GFF4477	0.19	-0.1
4,471,731	-		GFF4477	0.23	-0.7
4,471,740	+		GFF4477	0.24	-2.2
4,471,760	+		GFF4477	0.25	+0.2
4,471,760	+		GFF4477	0.25	+0.7
4,471,786	+		GFF4477	0.27	+1.0
4,471,798	+		GFF4477	0.28	-1.1
4,471,805	+		GFF4477	0.29	-0.2
4,471,817	+		GFF4477	0.30	+0.9
4,471,819	+		GFF4477	0.30	+1.2
4,471,825	-		GFF4477	0.31	+1.5
4,471,827	-		GFF4477	0.31	+0.3
4,471,830	+		GFF4477	0.31	-0.4
4,471,837	-		GFF4477	0.32	-0.4
4,471,884	-		GFF4477	0.35	+0.9
4,471,884	-		GFF4477	0.35	-0.2
4,471,919	-		GFF4477	0.38	+1.9
4,471,934	-		GFF4477	0.40	+1.1
4,471,934	-		GFF4477	0.40	-1.0
4,471,964	+		GFF4477	0.42	+1.2
4,471,972	-		GFF4477	0.43	+0.7
4,471,976	+		GFF4477	0.43	+0.1
4,471,976	+		GFF4477	0.43	-0.3
4,471,976	+		GFF4477	0.43	+0.6
4,471,984	-		GFF4477	0.44	-1.9
4,471,984	-		GFF4477	0.44	-0.8
4,471,984	-		GFF4477	0.44	+0.7
4,471,984	-		GFF4477	0.44	-0.4
4,471,984	-		GFF4477	0.44	+1.0
4,471,984	-		GFF4477	0.44	+0.3
4,471,993	+		GFF4477	0.44	+1.1
4,472,001	-		GFF4477	0.45	+0.2
4,472,001	-		GFF4477	0.45	-2.3
4,472,001	-		GFF4477	0.45	-0.9
4,472,015	+		GFF4477	0.46	+0.3
4,472,015	+		GFF4477	0.46	-0.4
4,472,015	-		GFF4477	0.46	+0.5
4,472,023	-		GFF4477	0.47	+1.1
4,472,060	-		GFF4477	0.50	-0.9
4,472,063	+		GFF4477	0.50	+1.6
4,472,063	+		GFF4477	0.50	+0.1
4,472,063	+		GFF4477	0.50	+0.9
4,472,068	+		GFF4477	0.50	-1.6
4,472,071	-		GFF4477	0.51	-2.4
4,472,071	-		GFF4477	0.51	-1.6
4,472,071	-		GFF4477	0.51	+0.4
4,472,073	+		GFF4477	0.51	+0.6
4,472,099	-		GFF4477	0.53	-1.7
4,472,124	-		GFF4477	0.55	+0.3
4,472,134	+		GFF4477	0.56	-0.6
4,472,135	-		GFF4477	0.56	-0.8
4,472,150	+		GFF4477	0.57	+0.6
4,472,150	+		GFF4477	0.57	-0.4
4,472,150	+		GFF4477	0.57	-1.0
4,472,158	-		GFF4477	0.58	+0.4
4,472,160	+		GFF4477	0.58	-1.6
4,472,160	+		GFF4477	0.58	+1.6
4,472,160	+		GFF4477	0.58	-0.3
4,472,168	-		GFF4477	0.59	-1.4
4,472,168	-		GFF4477	0.59	-0.4
4,472,184	+		GFF4477	0.60	-0.0
4,472,184	+		GFF4477	0.60	+0.3
4,472,187	-		GFF4477	0.60	+1.0
4,472,193	+		GFF4477	0.61	-0.3
4,472,210	+		GFF4477	0.62	+0.6
4,472,218	-		GFF4477	0.63	-0.3
4,472,218	-		GFF4477	0.63	+0.4
4,472,219	+		GFF4477	0.63	-1.1
4,472,219	+		GFF4477	0.63	+1.1
4,472,227	-		GFF4477	0.63	+0.6
4,472,227	-		GFF4477	0.63	+1.7
4,472,227	-		GFF4477	0.63	-0.6
4,472,227	-		GFF4477	0.63	-0.7
4,472,245	+		GFF4477	0.65	+0.1
4,472,253	-		GFF4477	0.65	+1.3
4,472,260	+		GFF4477	0.66	-1.1
4,472,264	-		GFF4477	0.66	+0.5
4,472,268	-		GFF4477	0.67	+0.3
4,472,276	+		GFF4477	0.67	-0.5
4,472,281	+		GFF4477	0.68	-1.2
4,472,284	-		GFF4477	0.68	+0.3
4,472,286	+		GFF4477	0.68	+0.5
4,472,289	-		GFF4477	0.68	-1.4
4,472,291	+		GFF4477	0.69	-0.1
4,472,291	+		GFF4477	0.69	-0.9
4,472,293	+		GFF4477	0.69	+1.6
4,472,294	-		GFF4477	0.69	+0.6
4,472,294	-		GFF4477	0.69	-0.5
4,472,299	-		GFF4477	0.69	+1.0
4,472,301	-		GFF4477	0.69	-0.3
4,472,342	-		GFF4477	0.73	-1.0
4,472,342	-		GFF4477	0.73	+0.6
4,472,365	+		GFF4477	0.75	-1.1
4,472,392	-		GFF4477	0.77	+0.6
4,472,404	+		GFF4477	0.78	+0.7
4,472,442	-		GFF4477	0.81	-1.0
4,472,442	-		GFF4477	0.81	-0.3
4,472,472	+		GFF4477	0.83	-0.0
4,472,474	+		GFF4477	0.83	+1.0
4,472,480	-		GFF4477	0.84	+0.4
4,472,533	-		GFF4477	0.88	+0.0
4,472,554	+		GFF4477	0.90	-0.2
4,472,559	+				-1.1
4,472,562	-				+1.3
4,472,562	-				-0.7
4,472,566	-				-0.1
4,472,576	+				+0.4
4,472,599	-				+1.4
4,472,612	+				-1.4
4,472,641	-				+0.7
4,472,643	+				+0.2
4,472,702	+				-0.8
4,472,702	+				-0.3
4,472,705	-				+1.8
4,472,710	-				-0.2
4,472,725	-				+1.1
4,472,737	-				-0.7
4,472,752	-				+1.6
4,472,757	-				+0.1
4,472,766	+				+0.4
4,472,766	+				+0.4
4,472,797	-				+0.3
4,472,799	+				+1.2
4,472,799	+				+0.3
4,472,799	+				+0.3
4,472,799	+				+0.2
4,472,799	+				+0.7
4,472,799	+				+0.5
4,472,807	-				+0.4
4,472,807	-				+0.4
4,472,807	-				-0.0
4,472,807	-				-1.2
4,472,807	-				+1.5
4,472,807	-				-2.6
4,472,807	-				+0.1
4,472,814	-				+0.4
4,472,817	-				+0.4
4,472,817	-				+0.3
4,472,827	+				+0.1
4,472,827	-				+0.2
4,472,838	+				-0.9
4,472,849	+				-0.6
4,472,860	+				-0.1
4,472,860	+				-0.7
4,472,860	+				-0.1
4,472,860	+				-1.0
4,472,861	-				+0.8
4,472,863	-				+0.5
4,472,865	+				+1.9
4,472,868	-				-0.6
4,472,868	-				+0.2
4,472,890	-				-0.4
4,472,922	+				+0.6
4,472,923	-				+0.9
4,472,932	+				+0.2
4,472,947	+				-1.8
4,472,949	+				-1.7
4,472,955	-				-1.8
4,472,955	-				+0.6
4,472,976	-				-1.0
4,472,976	-				-0.7
4,473,065	+		GFF4478	0.71	+0.7
4,473,065	+		GFF4478	0.71	-0.5
4,473,066	-		GFF4478	0.72	-1.3
4,473,071	-		GFF4478	0.76	-0.2
4,473,073	-		GFF4478	0.78	-0.4
4,473,073	-		GFF4478	0.78	-0.4
4,473,100	+				+0.1
4,473,100	+				-0.3
4,473,100	+				+0.1
4,473,154	-				+0.3
4,473,202	-				+1.4
4,473,202	-				+0.5
4,473,204	+				+0.8
4,473,204	+				+0.8
4,473,204	+				+0.4
4,473,204	+				-0.9
4,473,204	+				-0.4
4,473,232	+				+0.0
4,473,232	+				+1.5
4,473,232	+				+0.9
4,473,239	+				-0.8
4,473,239	+				-1.2
4,473,240	-				+1.8
4,473,244	+				+0.0
4,473,244	+				-0.5
4,473,247	-				+0.3
4,473,247	-				-0.4
4,473,247	-				-1.4
4,473,249	+				+0.1
4,473,249	+				-0.3
4,473,249	+				-0.3
4,473,249	+				+0.0
4,473,249	+				+1.7
4,473,252	-				+1.1
4,473,257	-				+1.2
4,473,276	-				+0.8
4,473,281	+				-2.3
4,473,281	+				-1.5
4,473,286	+				+1.9
4,473,291	+				+1.5
4,473,291	+				-0.8
4,473,299	-				+0.6
4,473,299	-				+0.3
4,473,299	-				-0.2
4,473,299	-				+0.1
4,473,348	+				+0.0
4,473,348	+				+1.4
4,473,354	-				-0.1
4,473,356	-				-1.1
4,473,356	-				+0.5
4,473,356	-				+1.4
4,473,373	+				+0.9
4,473,373	-				+1.6
4,473,380	-				+1.2
4,473,380	-				-0.4
4,473,381	-				+0.5
4,473,390	+				-1.8
4,473,390	+				+0.9
4,473,398	-				+0.9
4,473,398	-				+0.1
4,473,400	+				+0.4
4,473,400	-				-1.4
4,473,408	-				-1.5
4,473,408	-				+0.5
4,473,415	+				+0.2
4,473,423	-				-0.4
4,473,432	+				-0.3
4,473,448	+				+1.5
4,473,456	+				+1.0
4,473,456	-				+0.7
4,473,458	+				-1.2
4,473,458	+				-0.2
4,473,458	+				+0.0
4,473,458	+				-0.1
4,473,458	+				-0.5
4,473,458	+				-0.2
4,473,466	-				+0.6
4,473,466	-				+0.8
4,473,466	-				+0.4
4,473,466	-				+0.5
4,473,466	-				+0.9
4,473,471	-				+0.9
4,473,480	-				+1.1
4,473,600	-				+0.4
4,473,609	-				+0.6
4,473,637	+				+0.8
4,473,645	-				-0.2
4,473,667	+		GFF4479	0.10	+0.6
4,473,667	+		GFF4479	0.10	+0.5
4,473,675	-		GFF4479	0.12	-0.4
4,473,677	+		GFF4479	0.12	+1.1
4,473,677	+		GFF4479	0.12	-1.0
4,473,677	+		GFF4479	0.12	+0.4