Strain Fitness in Sphingobium sp. HT1-2 around GFF44

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
33,172	-		GFF42	0.61	-1.4
33,195	+		GFF42	0.64	-0.5
33,195	+		GFF42	0.64	+1.1
33,195	+		GFF42	0.64	-0.3
33,195	+		GFF42	0.64	+0.2
33,195	+		GFF42	0.64	-0.4
33,195	+		GFF42	0.64	+0.9
33,195	+		GFF42	0.64	+0.6
33,195	+		GFF42	0.64	+0.2
33,195	+		GFF42	0.64	-0.4
33,195	+		GFF42	0.64	+0.1
33,195	+		GFF42	0.64	+0.3
33,195	+		GFF42	0.64	-1.2
33,195	+		GFF42	0.64	-1.1
33,195	+		GFF42	0.64	+0.1
33,195	+		GFF42	0.64	-0.3
33,203	-		GFF42	0.65	+0.0
33,203	-		GFF42	0.65	+1.2
33,203	-		GFF42	0.65	+0.1
33,203	-		GFF42	0.65	-1.7
33,203	-		GFF42	0.65	-1.7
33,203	-		GFF42	0.65	+1.3
33,203	-		GFF42	0.65	-0.4
33,203	-		GFF42	0.65	-0.3
33,203	-		GFF42	0.65	+0.6
33,203	-		GFF42	0.65	-1.1
33,203	-		GFF42	0.65	-0.3
33,241	+		GFF42	0.71	-2.2
33,241	+		GFF42	0.71	-0.8
33,241	+		GFF42	0.71	-0.5
33,242	-		GFF42	0.71	-0.6
33,249	-		GFF42	0.72	-0.2
33,249	-		GFF42	0.72	-0.5
33,249	-		GFF42	0.72	+0.0
33,250	-		GFF42	0.72	-1.3
33,262	+		GFF42	0.74	+0.3
33,271	+		GFF42	0.76	-0.4
33,272	-		GFF42	0.76	-1.4
33,272	-		GFF42	0.76	-2.8
33,272	-		GFF42	0.76	+0.5
33,277	-		GFF42	0.77	-0.4
33,282	+		GFF42	0.77	+0.4
33,282	+		GFF42	0.77	+0.2
33,282	+		GFF42	0.77	+0.7
33,282	+		GFF42	0.77	-0.8
33,285	-		GFF42	0.78	+1.1
33,290	-		GFF42	0.79	-2.0
33,290	-		GFF42	0.79	-0.6
33,290	-		GFF42	0.79	-2.6
33,294	-		GFF42	0.79	-3.1
33,324	+		GFF42	0.84	-0.0
33,377	-				-0.5
33,377	-				-0.4
33,387	+				+0.1
33,387	+				-1.7
33,388	+				+1.3
33,388	+				-0.2
33,395	-				-0.9
33,406	-				+0.0
33,454	-				-1.2
33,471	+				-1.2
33,476	+				+0.6
33,476	+				+0.6
33,476	+				-0.2
33,476	+				+0.7
33,476	+				-1.9
33,476	+				-0.4
33,479	-				+0.4
33,484	-				+0.3
33,484	-				+0.1
33,484	-				-0.5
33,484	-				-2.1
33,484	-				-2.6
33,484	-				-0.0
33,484	-				-0.7
33,484	-				+1.1
33,484	-				-0.6
33,484	-				-0.3
33,486	+				+0.6
33,490	+				-0.3
33,500	+				-0.7
33,500	+				-1.0
33,508	-		GFF43	0.10	-2.5
33,510	-		GFF43	0.11	-2.0
33,528	+		GFF43	0.14	+0.2
33,560	+		GFF43	0.19	-1.6
33,601	+		GFF43	0.25	+0.2
33,625	+		GFF43	0.29	+0.6
33,626	+		GFF43	0.29	-2.9
33,626	+		GFF43	0.29	-0.9
33,626	+		GFF43	0.29	-0.4
33,631	+		GFF43	0.30	+0.7
33,631	+		GFF43	0.30	-0.8
33,631	+		GFF43	0.30	-2.2
33,631	+		GFF43	0.30	-1.4
33,631	+		GFF43	0.30	-0.2
33,631	+		GFF43	0.30	+0.6
33,631	+		GFF43	0.30	+0.4
33,631	+		GFF43	0.30	+0.3
33,631	+		GFF43	0.30	+0.8
33,634	-		GFF43	0.30	-1.4
33,634	-		GFF43	0.30	-0.2
33,639	-		GFF43	0.31	-1.4
33,639	-		GFF43	0.31	-1.1
33,639	-		GFF43	0.31	+0.1
33,639	-		GFF43	0.31	-0.7
33,639	-		GFF43	0.31	+0.0
33,691	+		GFF43	0.40	+0.9
33,691	+		GFF43	0.40	+0.6
33,691	+		GFF43	0.40	-0.8
33,691	+		GFF43	0.40	-0.4
33,696	+		GFF43	0.40	+0.8
33,699	-		GFF43	0.41	+0.3
33,699	-		GFF43	0.41	+0.7
33,699	-		GFF43	0.41	-2.6
33,708	+		GFF43	0.42	-0.8
33,718	+		GFF43	0.44	-0.3
33,718	+		GFF43	0.44	-0.6
33,726	-		GFF43	0.45	+0.4
33,739	-		GFF43	0.47	+0.9
33,769	+		GFF43	0.52	-0.5
33,782	-		GFF43	0.54	+1.8
33,839	-		GFF43	0.63	-2.3
33,850	-		GFF43	0.65	+0.9
33,852	-		GFF43	0.65	-0.4
33,852	-		GFF43	0.65	+1.1
33,852	-		GFF43	0.65	-0.4
33,852	-		GFF43	0.65	-1.3
33,855	-		GFF43	0.66	-0.8
33,855	-		GFF43	0.66	+0.2
33,860	+		GFF43	0.67	+0.8
33,867	+		GFF43	0.68	-0.4
33,867	+		GFF43	0.68	-0.1
33,867	+		GFF43	0.68	-1.9
33,867	+		GFF43	0.68	-0.8
33,867	+		GFF43	0.68	+0.3
33,867	+		GFF43	0.68	-0.7
33,867	+		GFF43	0.68	+0.1
33,867	+		GFF43	0.68	-0.2
33,868	-		GFF43	0.68	+0.2
33,875	-		GFF43	0.69	-2.7
33,875	-		GFF43	0.69	-0.6
33,887	+		GFF43	0.71	-0.7
33,914	-		GFF43	0.75	-2.2
33,930	+		GFF43	0.78	+0.3
33,938	+		GFF43	0.79	-1.2
33,938	-		GFF43	0.79	-0.3
33,938	-		GFF43	0.79	+0.3
33,967	+		GFF43	0.84	-1.1
33,969	-		GFF43	0.84	-0.9
33,975	-		GFF43	0.85	+2.4
34,013	+				-0.2
34,015	+				-1.2
34,015	+				-0.3
34,030	+				+0.4
34,030	+				-0.5
34,034	-				-1.2
34,059	+				-1.9
34,059	+				+0.0
34,059	+				-0.4
34,067	-				+0.5
34,072	-				-0.8
34,072	-				+1.5
34,072	-				-2.4
34,072	-				+1.1
34,072	-				-1.8
34,072	-				-0.7
34,077	-				-1.0
34,079	-				-1.2
34,089	-				+1.0
34,096	-				-2.0
34,122	+				+0.8
34,128	+				+0.3
34,129	+				+0.4
34,129	+				-1.9
34,129	+				-0.8
34,137	-				-0.2
34,137	-				+1.0
34,145	-				-1.6
34,158	+				+1.0
34,161	-				-1.2
34,163	+				-1.5
34,166	-				+0.2
34,166	-				-0.7
34,168	+				+0.4
34,171	-				-0.3
34,171	-				+0.2
34,173	+				-1.6
34,176	-				+0.2
34,206	+				+0.1
34,210	-				-0.3
34,210	-				-0.7
34,212	+				-0.4
34,214	+				-1.8
34,217	-		GFF44	0.10	-1.6
34,217	-		GFF44	0.10	-0.1
34,217	-		GFF44	0.10	-0.5
34,219	+		GFF44	0.11	+0.6
34,219	+		GFF44	0.11	-1.9
34,222	-		GFF44	0.11	-1.0
34,227	-		GFF44	0.12	+1.8
34,239	-		GFF44	0.15	+0.3
34,241	+		GFF44	0.15	-0.2
34,243	+		GFF44	0.16	+0.3
34,263	+		GFF44	0.20	-0.9
34,271	-		GFF44	0.22	+1.3
34,312	+		GFF44	0.31	-0.6
34,312	-		GFF44	0.31	+1.3
34,312	-		GFF44	0.31	+1.0
34,323	+		GFF44	0.33	+0.5
34,358	+		GFF44	0.40	-2.5
34,358	+		GFF44	0.40	-1.4
34,364	-		GFF44	0.42	-0.4
34,366	-		GFF44	0.42	+0.3
34,366	-		GFF44	0.42	-1.6
34,366	-		GFF44	0.42	+0.3
34,377	-		GFF44	0.45	+1.6
34,384	-		GFF44	0.46	+0.6
34,442	+		GFF44	0.58	-0.2
34,442	+		GFF44	0.58	-0.7
34,442	+		GFF44	0.58	+0.6
34,442	+		GFF44	0.58	+0.2
34,442	+		GFF44	0.58	-0.5
34,442	+		GFF44	0.58	-0.5
34,442	+		GFF44	0.58	+0.0
34,442	+		GFF44	0.58	+0.8
34,450	-		GFF44	0.60	+0.9
34,450	-		GFF44	0.60	+0.1
34,450	-		GFF44	0.60	-0.0
34,450	-		GFF44	0.60	-0.3
34,450	-		GFF44	0.60	+1.8
34,452	+		GFF44	0.61	+0.4
34,455	-		GFF44	0.61	+1.0
34,464	+		GFF44	0.63	-0.2
34,464	+		GFF44	0.63	-2.6
34,464	+		GFF44	0.63	-0.5
34,464	+		GFF44	0.63	-0.3
34,464	+		GFF44	0.63	-0.2
34,464	+		GFF44	0.63	+0.8
34,479	+		GFF44	0.66	-0.0
34,511	+		GFF44	0.73	+1.2
34,511	+		GFF44	0.73	-0.5
34,519	-		GFF44	0.75	-1.1
34,519	-		GFF44	0.75	+0.6
34,525	+		GFF44	0.76	-0.4
34,546	-		GFF44	0.81	-2.5
34,577	-		GFF44	0.88	+0.0
34,601	+				-2.4
34,609	-				-1.2
34,651	+				+0.3
34,670	-				-0.2
34,703	+				-0.6
34,708	+				-0.0
34,708	+				+0.2
34,708	+				-0.2
34,716	-				+0.7
34,716	-				-0.5
34,730	+				+0.5
34,734	-				+0.0
34,738	-				+0.0
34,739	-				-0.7
34,775	-				-0.7
34,800	+				-1.2
34,800	+				+0.2
34,800	+				+1.2
34,800	+				+0.6
34,800	+				-0.1
34,800	+				+1.1
34,800	+				+0.3
34,808	-				+0.7
34,808	-				-0.6
34,808	-				-0.9
34,826	+				-3.0
34,826	+				+0.4
34,826	+				-1.2
34,834	-				+0.5
34,834	-				+1.1
34,834	-				+0.1
34,834	-				+0.8
34,834	-				-0.7
34,846	-				-0.4
34,879	+		GFF45	0.12	-0.6
34,886	-		GFF45	0.12	+1.1
34,903	+		GFF45	0.13	+0.0
34,903	+		GFF45	0.13	+1.0
34,903	+		GFF45	0.13	+0.1
34,991	+		GFF45	0.19	+0.8
35,009	+		GFF45	0.20	+0.6
35,009	+		GFF45	0.20	-0.6
35,009	+		GFF45	0.20	-1.1
35,009	+		GFF45	0.20	-0.6
35,017	-		GFF45	0.21	-0.4
35,017	-		GFF45	0.21	-1.3
35,027	+		GFF45	0.21	-0.3
35,027	+		GFF45	0.21	-0.3
35,034	+		GFF45	0.22	-1.0
35,042	-		GFF45	0.22	+0.2
35,060	+		GFF45	0.24	+1.6
35,060	+		GFF45	0.24	-1.6
35,068	+		GFF45	0.24	+0.7
35,068	+		GFF45	0.24	+0.8
35,068	-		GFF45	0.24	+0.6
35,068	-		GFF45	0.24	+0.5
35,068	-		GFF45	0.24	-1.2
35,068	-		GFF45	0.24	-0.7
35,076	-		GFF45	0.25	+0.2
35,076	-		GFF45	0.25	-0.4
35,076	-		GFF45	0.25	-1.9
35,077	+		GFF45	0.25	+0.3
35,079	+		GFF45	0.25	-0.6
35,101	-		GFF45	0.26	-1.1
35,142	+		GFF45	0.29	-0.7
35,153	-		GFF45	0.30	+0.6
35,158	+		GFF45	0.30	+1.1
35,158	+		GFF45	0.30	-0.7
35,158	+		GFF45	0.30	+0.6
35,166	+		GFF45	0.30	+1.0
35,166	-		GFF45	0.30	-1.8
35,168	+		GFF45	0.31	+0.6
35,193	+		GFF45	0.32	-0.4
35,194	+		GFF45	0.32	+0.7
35,194	+		GFF45	0.32	+0.3
35,196	-		GFF45	0.32	-2.6
35,218	-		GFF45	0.34	-0.4
35,226	+		GFF45	0.34	+1.2
35,236	+		GFF45	0.35	-0.0
35,236	+		GFF45	0.35	+0.1
35,244	-		GFF45	0.35	-0.5
35,259	+		GFF45	0.36	+1.8
35,283	+		GFF45	0.38	-2.2
35,283	+		GFF45	0.38	+1.0
35,288	+		GFF45	0.38	-1.5
35,288	+		GFF45	0.38	-2.4
35,288	+		GFF45	0.38	-1.2
35,291	-		GFF45	0.38	+0.3
35,293	+		GFF45	0.39	-0.3
35,296	-		GFF45	0.39	+0.2
35,296	-		GFF45	0.39	+0.2
35,296	-		GFF45	0.39	-0.3
35,296	-		GFF45	0.39	+0.3
35,314	-		GFF45	0.40	-0.3
35,336	-		GFF45	0.41	-0.6
35,346	+		GFF45	0.42	-0.4
35,359	-		GFF45	0.43	-0.1
35,375	-		GFF45	0.44	-0.2
35,375	-		GFF45	0.44	-2.4
35,392	-		GFF45	0.45	+0.1
35,413	-		GFF45	0.46	-0.5
35,416	+		GFF45	0.47	+0.2
35,417	-		GFF45	0.47	+0.3
35,421	+		GFF45	0.47	+0.6
35,424	-		GFF45	0.47	+0.2
35,429	-		GFF45	0.47	+0.3
35,467	-		GFF45	0.50	+0.3
35,467	-		GFF45	0.50	-0.5
35,475	+		GFF45	0.50	-0.4
35,477	+		GFF45	0.50	-0.9
35,477	-		GFF45	0.50	-0.7
35,501	+		GFF45	0.52	-1.5
35,520	-		GFF45	0.53	-1.4
35,523	-		GFF45	0.53	-0.0
35,566	+		GFF45	0.56	-0.8
35,566	+		GFF45	0.56	-1.4
35,566	+		GFF45	0.56	-1.7
35,566	+		GFF45	0.56	-1.0
35,574	-		GFF45	0.57	-2.4
35,574	-		GFF45	0.57	-0.5
35,581	+		GFF45	0.57	-2.0
35,581	+		GFF45	0.57	-0.5
35,599	+		GFF45	0.58	+0.5
35,607	-		GFF45	0.59	+0.2
35,607	-		GFF45	0.59	-0.5
35,614	+		GFF45	0.59	-0.6
35,619	+		GFF45	0.60	+0.5
35,619	+		GFF45	0.60	+0.2
35,619	+		GFF45	0.60	+0.6
35,622	-		GFF45	0.60	-0.8