Strain Fitness in Sphingobium sp. HT1-2 around GFF4360

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,360,027	-		GFF4359	0.47	-1.5
4,360,051	-		GFF4359	0.49	+0.0
4,360,066	+		GFF4359	0.50	+0.9
4,360,085	-		GFF4359	0.51	+0.0
4,360,096	+		GFF4359	0.52	-0.4
4,360,101	+		GFF4359	0.52	+0.5
4,360,109	+		GFF4359	0.52	-0.3
4,360,109	-		GFF4359	0.52	-1.0
4,360,109	-		GFF4359	0.52	+0.8
4,360,109	-		GFF4359	0.52	+0.5
4,360,109	-		GFF4359	0.52	-0.9
4,360,114	+		GFF4359	0.53	+0.1
4,360,122	-		GFF4359	0.53	-0.5
4,360,122	-		GFF4359	0.53	+0.6
4,360,147	-		GFF4359	0.55	-0.9
4,360,147	-		GFF4359	0.55	-1.2
4,360,147	-		GFF4359	0.55	-0.5
4,360,147	-		GFF4359	0.55	-0.2
4,360,147	-		GFF4359	0.55	+0.6
4,360,147	-		GFF4359	0.55	-2.7
4,360,176	+		GFF4359	0.57	-2.0
4,360,188	+		GFF4359	0.57	+0.0
4,360,188	+		GFF4359	0.57	-1.3
4,360,188	+		GFF4359	0.57	-0.2
4,360,188	+		GFF4359	0.57	+0.6
4,360,188	+		GFF4359	0.57	-0.2
4,360,188	+		GFF4359	0.57	+0.0
4,360,188	+		GFF4359	0.57	-1.3
4,360,196	-		GFF4359	0.58	-1.1
4,360,196	-		GFF4359	0.58	+0.6
4,360,196	-		GFF4359	0.58	+1.0
4,360,196	-		GFF4359	0.58	-0.3
4,360,196	-		GFF4359	0.58	-0.2
4,360,196	-		GFF4359	0.58	+2.1
4,360,196	-		GFF4359	0.58	-0.3
4,360,196	-		GFF4359	0.58	+0.5
4,360,196	-		GFF4359	0.58	-0.1
4,360,198	-		GFF4359	0.58	-0.2
4,360,284	-		GFF4359	0.63	-0.2
4,360,298	+		GFF4359	0.64	-0.1
4,360,337	+		GFF4359	0.66	+0.0
4,360,337	+		GFF4359	0.66	-0.5
4,360,348	-		GFF4359	0.67	-1.1
4,360,356	+		GFF4359	0.68	+0.6
4,360,361	+		GFF4359	0.68	+0.0
4,360,361	+		GFF4359	0.68	+0.6
4,360,363	+		GFF4359	0.68	-1.7
4,360,364	-		GFF4359	0.68	+0.3
4,360,364	-		GFF4359	0.68	-1.4
4,360,405	+		GFF4359	0.71	-0.6
4,360,406	-		GFF4359	0.71	-1.5
4,360,412	-		GFF4359	0.71	-0.9
4,360,429	+		GFF4359	0.72	-0.6
4,360,437	-		GFF4359	0.73	-1.2
4,360,437	-		GFF4359	0.73	-1.8
4,360,447	-		GFF4359	0.73	-2.1
4,360,494	+		GFF4359	0.76	-1.0
4,360,494	+		GFF4359	0.76	-0.4
4,360,494	+		GFF4359	0.76	-1.1
4,360,494	+		GFF4359	0.76	+1.7
4,360,496	+		GFF4359	0.76	+0.8
4,360,496	+		GFF4359	0.76	-0.2
4,360,502	-		GFF4359	0.77	+1.5
4,360,502	-		GFF4359	0.77	-0.3
4,360,503	+		GFF4359	0.77	+0.4
4,360,503	+		GFF4359	0.77	-0.4
4,360,503	+		GFF4359	0.77	-1.6
4,360,503	+		GFF4359	0.77	-0.6
4,360,503	+		GFF4359	0.77	-1.9
4,360,503	+		GFF4359	0.77	-3.2
4,360,503	+		GFF4359	0.77	-0.1
4,360,503	+		GFF4359	0.77	+1.4
4,360,504	-		GFF4359	0.77	-0.1
4,360,504	-		GFF4359	0.77	+0.1
4,360,511	-		GFF4359	0.77	-1.9
4,360,511	-		GFF4359	0.77	-0.1
4,360,511	-		GFF4359	0.77	-1.6
4,360,511	-		GFF4359	0.77	-0.7
4,360,511	-		GFF4359	0.77	+0.4
4,360,511	-		GFF4359	0.77	-1.1
4,360,511	-		GFF4359	0.77	+0.5
4,360,511	-		GFF4359	0.77	+0.4
4,360,578	+		GFF4359	0.81	-0.2
4,360,608	+		GFF4359	0.83	-0.3
4,360,608	+		GFF4359	0.83	+0.5
4,360,616	-		GFF4359	0.83	+0.0
4,360,616	-		GFF4359	0.83	-0.3
4,360,616	-		GFF4359	0.83	-1.2
4,360,618	+		GFF4359	0.84	+1.5
4,360,618	+		GFF4359	0.84	+0.0
4,360,618	+		GFF4359	0.84	-0.1
4,360,626	-		GFF4359	0.84	-1.8
4,360,626	-		GFF4359	0.84	-0.5
4,360,626	-		GFF4359	0.84	-0.1
4,360,626	-		GFF4359	0.84	+0.2
4,360,626	-		GFF4359	0.84	-0.4
4,360,626	-		GFF4359	0.84	-0.5
4,360,628	+		GFF4359	0.84	-0.1
4,360,628	-		GFF4359	0.84	-1.0
4,360,637	+		GFF4359	0.85	+1.4
4,360,638	+		GFF4359	0.85	-0.1
4,360,643	+		GFF4359	0.85	-1.8
4,360,643	+		GFF4359	0.85	+0.1
4,360,643	+		GFF4359	0.85	-0.7
4,360,643	+		GFF4359	0.85	-0.1
4,360,645	-		GFF4359	0.85	+0.7
4,360,645	-		GFF4359	0.85	+0.6
4,360,646	-		GFF4359	0.85	-1.5
4,360,646	-		GFF4359	0.85	+0.1
4,360,646	-		GFF4359	0.85	-0.8
4,360,646	-		GFF4359	0.85	-0.5
4,360,646	-		GFF4359	0.85	-0.5
4,360,646	-		GFF4359	0.85	+1.1
4,360,651	-		GFF4359	0.86	-1.3
4,360,651	-		GFF4359	0.86	+1.0
4,360,651	-		GFF4359	0.86	+0.9
4,360,656	+		GFF4359	0.86	-0.5
4,360,664	-		GFF4359	0.86	-2.2
4,360,664	-		GFF4359	0.86	+0.0
4,360,694	+		GFF4359	0.88	+0.1
4,360,694	+		GFF4359	0.88	-1.7
4,360,694	+		GFF4359	0.88	+0.0
4,360,708	+		GFF4359	0.89	+0.9
4,360,716	-		GFF4359	0.90	+0.3
4,360,745	-				-0.2
4,360,746	-				+0.7
4,360,753	+				+0.0
4,360,753	+				-1.9
4,360,753	+				-1.1
4,360,753	+				+0.7
4,360,753	+				-0.2
4,360,753	+				-0.2
4,360,761	-				-1.5
4,360,761	-				+0.6
4,360,761	-				+0.6
4,360,761	-				+0.8
4,360,761	-				-1.3
4,360,761	-				+1.4
4,360,761	-				-0.2
4,360,761	-				-0.6
4,360,761	-				+0.0
4,360,761	-				+0.6
4,360,770	+				+0.7
4,360,770	+				-0.5
4,360,770	+				-1.6
4,360,770	+				-0.7
4,360,770	+				+0.7
4,360,778	-				+1.4
4,360,778	-				+1.0
4,360,778	-				-0.5
4,360,778	-				-2.7
4,360,778	-				+1.3
4,360,778	-				+0.0
4,360,778	-				-1.5
4,360,778	-				-0.3
4,360,778	-				-1.8
4,360,778	-				-0.5
4,360,778	-				+0.5
4,360,778	-				-1.0
4,360,803	-				+0.1
4,360,822	+				-1.6
4,360,822	+				+0.3
4,360,840	-				+0.1
4,360,846	+				+0.3
4,360,846	+				-1.8
4,360,854	+				-0.4
4,360,854	+				-0.2
4,360,862	-				-1.6
4,360,862	-				+0.7
4,360,862	-				-0.5
4,360,873	+				-1.5
4,360,874	-				-0.8
4,360,887	-				-0.9
4,360,923	-				-0.9
4,360,928	-				-2.7
4,360,943	+				-0.3
4,360,953	+				-1.7
4,360,955	-				-1.7
4,360,961	-				-0.2
4,360,984	-				-2.6
4,360,984	-				-0.6
4,360,991	+				+0.2
4,361,002	+				+0.1
4,361,002	+				-0.7
4,361,002	+				+0.1
4,361,005	-				+1.2
4,361,005	-				-1.1
4,361,011	-				+0.1
4,361,011	-				-1.7
4,361,050	+				-0.7
4,361,068	+				-0.2
4,361,110	+		GFF4360	0.17	-0.5
4,361,119	-		GFF4360	0.19	+0.5
4,361,135	-		GFF4360	0.23	-1.2
4,361,141	+		GFF4360	0.24	-0.1
4,361,151	-		GFF4360	0.26	+1.9
4,361,170	+		GFF4360	0.30	+0.3
4,361,173	+		GFF4360	0.30	+0.4
4,361,221	+		GFF4360	0.40	+0.9
4,361,228	+		GFF4360	0.42	+0.1
4,361,237	-		GFF4360	0.44	-0.4
4,361,239	+		GFF4360	0.44	-0.6
4,361,239	+		GFF4360	0.44	-0.9
4,361,239	-		GFF4360	0.44	+0.6
4,361,239	-		GFF4360	0.44	-0.9
4,361,252	+		GFF4360	0.47	-0.1
4,361,252	+		GFF4360	0.47	-0.1
4,361,252	+		GFF4360	0.47	+0.5
4,361,260	-		GFF4360	0.49	+0.2
4,361,260	-		GFF4360	0.49	-0.5
4,361,260	-		GFF4360	0.49	-0.5
4,361,260	-		GFF4360	0.49	+0.8
4,361,260	-		GFF4360	0.49	-2.0
4,361,282	+		GFF4360	0.53	+0.8
4,361,301	-		GFF4360	0.57	+0.5
4,361,321	+		GFF4360	0.61	-0.3
4,361,329	-		GFF4360	0.63	-0.6
4,361,329	-		GFF4360	0.63	-0.8
4,361,337	-		GFF4360	0.65	+0.9
4,361,337	-		GFF4360	0.65	+0.4
4,361,350	+		GFF4360	0.67	+0.1
4,361,358	-		GFF4360	0.69	-1.2
4,361,370	+		GFF4360	0.71	-0.8
4,361,370	+		GFF4360	0.71	+0.2
4,361,378	-		GFF4360	0.73	-0.4
4,361,378	-		GFF4360	0.73	-1.1
4,361,379	+		GFF4360	0.73	-1.6
4,361,392	+		GFF4360	0.76	+0.9
4,361,420	+		GFF4360	0.82	-0.2
4,361,420	+		GFF4360	0.82	-0.2
4,361,428	+		GFF4360	0.84	+0.9
4,361,428	-		GFF4360	0.84	-0.8
4,361,429	+		GFF4360	0.84	+0.7
4,361,429	+		GFF4360	0.84	-1.7
4,361,429	+		GFF4360	0.84	-0.8
4,361,429	-		GFF4360	0.84	-1.1
4,361,434	+		GFF4360	0.85	+0.5
4,361,437	-		GFF4360	0.85	+0.1
4,361,437	-		GFF4360	0.85	-0.5
4,361,464	+				+0.6
4,361,468	+				-1.6
4,361,468	+				-0.1
4,361,476	-				-0.5
4,361,486	-				+1.0
4,361,487	+				-2.2
4,361,495	+				-0.8
4,361,495	+				-0.7
4,361,495	+				+0.2
4,361,495	+				+0.2
4,361,495	+				-1.8
4,361,495	+				-0.3
4,361,495	+				+0.0
4,361,503	-				-1.2
4,361,503	-				+0.2
4,361,503	-				+1.5
4,361,503	-				-0.1
4,361,503	-				-0.4
4,361,503	-				+0.2
4,361,507	+				+0.1
4,361,507	+				-0.3
4,361,513	-				-0.6
4,361,515	+				-1.8
4,361,516	+				+0.5
4,361,524	-				+0.3
4,361,524	-				-0.7
4,361,528	+				-0.3
4,361,531	-				+0.5
4,361,536	-				-0.2
4,361,542	+				+0.9
4,361,542	+				-0.1
4,361,544	+				-0.9
4,361,544	+				-0.3
4,361,550	-				-0.6
4,361,550	-				-1.7
4,361,550	-				+0.4
4,361,552	-				+1.0
4,361,552	-				-0.1
4,361,552	-				+0.2
4,361,557	-				+1.4
4,361,562	-				+0.5
4,361,592	+				-1.0
4,361,610	+				-0.6
4,361,610	+				+0.9
4,361,612	+				-0.3
4,361,640	+				-1.2
4,361,640	+				-1.4
4,361,640	-				+0.2
4,361,690	+		GFF4361	0.13	-0.1
4,361,698	-		GFF4361	0.14	-1.2
4,361,700	+		GFF4361	0.14	-1.5
4,361,708	-		GFF4361	0.15	-1.0
4,361,708	-		GFF4361	0.15	-0.5
4,361,708	-		GFF4361	0.15	+0.1
4,361,709	+		GFF4361	0.15	+0.1
4,361,710	+		GFF4361	0.15	-1.5
4,361,718	-		GFF4361	0.16	+1.3
4,361,722	-		GFF4361	0.17	-0.2
4,361,725	+		GFF4361	0.17	-0.1
4,361,732	-		GFF4361	0.18	+0.4
4,361,747	+		GFF4361	0.19	-1.8
4,361,748	+		GFF4361	0.20	-1.6
4,361,748	+		GFF4361	0.20	+0.6
4,361,748	+		GFF4361	0.20	-0.7
4,361,748	+		GFF4361	0.20	-0.4
4,361,748	+		GFF4361	0.20	-1.1
4,361,748	+		GFF4361	0.20	-1.1
4,361,748	+		GFF4361	0.20	-0.8
4,361,751	-		GFF4361	0.20	-0.1
4,361,755	-		GFF4361	0.20	+1.2
4,361,756	-		GFF4361	0.20	+0.1
4,361,756	-		GFF4361	0.20	-1.0
4,361,756	-		GFF4361	0.20	+0.0
4,361,756	-		GFF4361	0.20	-1.6
4,361,759	+		GFF4361	0.21	-1.0
4,361,763	+		GFF4361	0.21	-1.6
4,361,767	-		GFF4361	0.22	+0.1
4,361,792	+		GFF4361	0.24	-0.6
4,361,792	+		GFF4361	0.24	-1.0
4,361,792	+		GFF4361	0.24	+1.0
4,361,792	-		GFF4361	0.24	-2.4
4,361,797	+		GFF4361	0.25	-0.2
4,361,800	-		GFF4361	0.25	-1.4
4,361,800	-		GFF4361	0.25	-2.3
4,361,805	-		GFF4361	0.26	-0.1
4,361,805	-		GFF4361	0.26	+0.8
4,361,807	+		GFF4361	0.26	+0.7
4,361,807	+		GFF4361	0.26	+0.6
4,361,815	-		GFF4361	0.27	-1.0
4,361,915	+		GFF4361	0.38	-0.6
4,361,928	-		GFF4361	0.40	-0.2
4,361,928	-		GFF4361	0.40	-0.1
4,361,947	+		GFF4361	0.42	-0.2
4,361,947	+		GFF4361	0.42	+1.1
4,361,962	-		GFF4361	0.44	-0.8
4,361,964	+		GFF4361	0.44	+0.5
4,361,964	+		GFF4361	0.44	-3.0
4,361,970	-		GFF4361	0.44	+0.7
4,361,972	-		GFF4361	0.45	-1.0
4,361,972	-		GFF4361	0.45	-1.2
4,361,972	-		GFF4361	0.45	+0.7
4,361,978	-		GFF4361	0.45	+1.1
4,361,987	+		GFF4361	0.46	+0.7
4,361,987	+		GFF4361	0.46	-1.4
4,361,995	-		GFF4361	0.47	-0.1
4,361,995	-		GFF4361	0.47	-1.0
4,361,997	+		GFF4361	0.47	+0.0
4,362,011	+		GFF4361	0.49	+0.4
4,362,020	-		GFF4361	0.50	-0.6
4,362,021	-		GFF4361	0.50	-0.8
4,362,024	+		GFF4361	0.51	+0.4
4,362,031	-		GFF4361	0.51	-1.1
4,362,037	-		GFF4361	0.52	-0.7
4,362,043	+		GFF4361	0.53	+0.0
4,362,050	+		GFF4361	0.53	-0.5
4,362,051	+		GFF4361	0.54	-0.5
4,362,051	+		GFF4361	0.54	+0.1
4,362,059	-		GFF4361	0.54	-0.5
4,362,059	-		GFF4361	0.54	-1.1
4,362,059	-		GFF4361	0.54	-0.2
4,362,059	-		GFF4361	0.54	-0.6
4,362,059	-		GFF4361	0.54	+0.1
4,362,059	-		GFF4361	0.54	-0.7
4,362,082	+		GFF4361	0.57	+0.3
4,362,084	-		GFF4361	0.57	-0.6
4,362,089	-		GFF4361	0.58	-0.5
4,362,089	-		GFF4361	0.58	-1.1
4,362,099	-		GFF4361	0.59	-0.5
4,362,119	+		GFF4361	0.61	-0.6
4,362,127	-		GFF4361	0.62	+0.6
4,362,129	+		GFF4361	0.62	+0.4
4,362,137	-		GFF4361	0.63	+0.6
4,362,138	-		GFF4361	0.63	-0.5
4,362,140	+		GFF4361	0.64	+0.7
4,362,152	+		GFF4361	0.65	-0.6
4,362,152	+		GFF4361	0.65	-0.8
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4,362,380	-				-0.1
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4,362,447	+				+0.5
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4,362,449	-				-1.7
4,362,449	-				-0.8
4,362,449	-				+0.3
4,362,449	-				+0.2
4,362,449	-				-2.2
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4,362,455	-				-0.7
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