Strain Fitness in Sphingobium sp. HT1-2 around GFF4349

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,348,252	-		GFF4347	0.40	-0.3
4,348,263	-		GFF4347	0.42	-0.2
4,348,275	+		GFF4347	0.45	-0.9
4,348,283	-		GFF4347	0.46	-0.1
4,348,284	-		GFF4347	0.47	-0.4
4,348,284	-		GFF4347	0.47	-0.2
4,348,284	-		GFF4347	0.47	-0.3
4,348,284	-		GFF4347	0.47	-1.7
4,348,286	+		GFF4347	0.47	+0.6
4,348,291	+		GFF4347	0.48	-0.5
4,348,294	-		GFF4347	0.49	-0.3
4,348,299	-		GFF4347	0.50	+0.6
4,348,301	+		GFF4347	0.50	-0.8
4,348,302	+		GFF4347	0.51	+0.7
4,348,304	-		GFF4347	0.51	-1.9
4,348,304	-		GFF4347	0.51	+0.6
4,348,305	+		GFF4347	0.51	+0.0
4,348,341	-		GFF4347	0.59	-0.0
4,348,377	+		GFF4347	0.67	-1.5
4,348,380	-		GFF4347	0.67	+0.4
4,348,396	+		GFF4347	0.71	-0.8
4,348,396	+		GFF4347	0.71	+0.5
4,348,396	+		GFF4347	0.71	-1.6
4,348,399	+		GFF4347	0.71	-1.7
4,348,404	-		GFF4347	0.72	-0.0
4,348,404	-		GFF4347	0.72	-0.3
4,348,424	+		GFF4347	0.77	-0.3
4,348,432	-		GFF4347	0.78	+0.0
4,348,439	-		GFF4347	0.80	+1.0
4,348,440	-		GFF4347	0.80	-2.5
4,348,450	+		GFF4347	0.82	-0.6
4,348,450	-		GFF4347	0.82	+1.3
4,348,455	+		GFF4347	0.83	-1.4
4,348,455	+		GFF4347	0.83	+0.4
4,348,455	+		GFF4347	0.83	+0.3
4,348,455	+		GFF4347	0.83	-0.9
4,348,455	+		GFF4347	0.83	+0.4
4,348,455	+		GFF4347	0.83	+0.6
4,348,455	+		GFF4347	0.83	-1.8
4,348,455	+		GFF4347	0.83	+0.4
4,348,455	+		GFF4347	0.83	+0.2
4,348,460	+		GFF4347	0.85	+0.2
4,348,460	+		GFF4347	0.85	+1.2
4,348,463	-		GFF4347	0.85	+0.2
4,348,463	-		GFF4347	0.85	+0.8
4,348,463	-		GFF4347	0.85	+1.9
4,348,463	-		GFF4347	0.85	+0.9
4,348,463	-		GFF4347	0.85	+0.3
4,348,463	-		GFF4347	0.85	+0.4
4,348,463	-		GFF4347	0.85	-1.6
4,348,463	-		GFF4347	0.85	+0.6
4,348,463	-		GFF4347	0.85	-1.7
4,348,463	-		GFF4347	0.85	-0.4
4,348,463	-		GFF4347	0.85	+0.3
4,348,463	-		GFF4347	0.85	-0.2
4,348,463	-		GFF4347	0.85	-0.2
4,348,463	-		GFF4347	0.85	-2.2
4,348,463	-		GFF4347	0.85	-0.1
4,348,463	-		GFF4347	0.85	-0.0
4,348,463	-		GFF4347	0.85	+0.5
4,348,463	-		GFF4347	0.85	+0.1
4,348,470	+		GFF4347	0.87	-0.3
4,348,470	+		GFF4347	0.87	-0.6
4,348,470	+		GFF4347	0.87	-0.1
4,348,470	+		GFF4347	0.87	+1.1
4,348,475	+		GFF4347	0.88	+0.9
4,348,475	+		GFF4347	0.88	-0.4
4,348,475	+		GFF4347	0.88	-1.4
4,348,475	+		GFF4347	0.88	-1.4
4,348,475	+		GFF4347	0.88	+0.3
4,348,475	+		GFF4347	0.88	-0.0
4,348,475	+		GFF4347	0.88	-1.4
4,348,475	+		GFF4347	0.88	-0.3
4,348,478	-		GFF4347	0.88	-0.2
4,348,478	-		GFF4347	0.88	-0.5
4,348,478	-		GFF4347	0.88	-0.2
4,348,483	-		GFF4347	0.89	-1.7
4,348,483	-		GFF4347	0.89	-1.1
4,348,483	-		GFF4347	0.89	-0.3
4,348,483	-		GFF4347	0.89	-0.0
4,348,483	-		GFF4347	0.89	+0.1
4,348,483	-		GFF4347	0.89	-0.8
4,348,483	-		GFF4347	0.89	+1.3
4,348,483	-		GFF4347	0.89	+0.4
4,348,483	-		GFF4347	0.89	+0.0
4,348,483	-		GFF4347	0.89	-0.8
4,348,483	-		GFF4347	0.89	-0.5
4,348,483	-		GFF4347	0.89	-0.1
4,348,523	+				-0.4
4,348,523	+				+1.6
4,348,523	+				-2.1
4,348,523	+				-1.2
4,348,523	+				+0.1
4,348,531	-				-1.3
4,348,531	-				-0.0
4,348,531	-				-2.2
4,348,531	-				+0.1
4,348,531	-				-0.6
4,348,531	-				-0.0
4,348,531	-				+1.1
4,348,533	+				-1.6
4,348,533	+				+1.0
4,348,540	-				-0.6
4,348,541	-				+0.8
4,348,541	-				+0.4
4,348,543	+				+0.7
4,348,554	+				-0.7
4,348,554	+				-0.6
4,348,554	+				+0.8
4,348,562	-				+0.3
4,348,562	-				+0.3
4,348,562	-				+0.3
4,348,575	-				-0.9
4,348,590	-				+0.8
4,348,590	-				-0.3
4,348,591	+				-0.1
4,348,599	-				+0.2
4,348,673	-				+1.1
4,348,673	-				-0.9
4,348,679	+				+0.4
4,348,680	-				-1.7
4,348,690	+				-1.8
4,348,696	+				-0.5
4,348,701	+				+0.3
4,348,706	+				-0.7
4,348,713	+				-0.6
4,348,713	+				-0.8
4,348,713	+				+0.2
4,348,714	-				-1.0
4,348,714	-				-0.1
4,348,719	-				-1.6
4,348,721	-				-1.8
4,348,721	-				+0.0
4,348,723	+				-1.8
4,348,726	+				-0.4
4,348,726	-				-1.4
4,348,728	+				+0.6
4,348,736	-				-0.2
4,348,745	+				-1.3
4,348,750	+				+0.8
4,348,750	+				-0.9
4,348,750	+				-0.3
4,348,750	+				+0.6
4,348,750	+				+1.2
4,348,750	+				+1.0
4,348,750	+				-2.2
4,348,753	-				-0.2
4,348,753	-				+1.1
4,348,758	-				-1.6
4,348,766	+				-0.1
4,348,773	-				-0.8
4,348,793	+				-1.6
4,348,823	+				+0.3
4,348,826	+				-0.5
4,348,827	+				+0.8
4,348,827	+				-0.5
4,348,828	+				+0.7
4,348,851	-				+0.9
4,348,882	+				+0.1
4,348,907	-				-0.6
4,348,908	+				+0.9
4,348,910	+				-0.9
4,348,916	-				+0.4
4,348,918	-				+0.3
4,348,932	+				-0.6
4,348,941	+				-1.1
4,348,952	-				+0.0
4,348,955	+				-0.2
4,348,955	+				+0.2
4,348,962	-				+1.9
4,348,963	-				+0.9
4,348,963	-				+1.3
4,348,968	-				+0.8
4,348,971	+				-0.6
4,348,973	-				+0.9
4,348,974	-				-0.8
4,348,974	-				-1.6
4,348,975	+				-1.0
4,348,979	-				+0.5
4,348,983	-				-1.7
4,348,983	-				-0.6
4,348,991	-		GFF4348	0.13	+0.1
4,349,014	-		GFF4348	0.21	+1.2
4,349,016	+		GFF4348	0.22	-0.0
4,349,017	+		GFF4348	0.22	+0.3
4,349,038	-		GFF4348	0.29	-1.6
4,349,045	+		GFF4348	0.32	+0.4
4,349,053	-		GFF4348	0.35	+1.1
4,349,072	-		GFF4348	0.42	+0.6
4,349,076	-		GFF4348	0.43	+0.2
4,349,085	-		GFF4348	0.46	-0.2
4,349,112	+		GFF4348	0.56	-0.2
4,349,161	+		GFF4348	0.73	+0.1
4,349,169	-		GFF4348	0.76	+0.1
4,349,191	+		GFF4348	0.84	+0.3
4,349,207	+				-0.5
4,349,216	-				+0.4
4,349,220	+				-0.6
4,349,220	+				-0.6
4,349,228	-				-0.2
4,349,257	-				-0.9
4,349,282	+		GFF4349	0.10	-0.8
4,349,290	-		GFF4349	0.12	-1.1
4,349,302	+		GFF4349	0.14	-1.6
4,349,305	-		GFF4349	0.15	-0.7
4,349,307	-		GFF4349	0.15	+0.4
4,349,310	-		GFF4349	0.16	-0.2
4,349,314	+		GFF4349	0.17	-1.0
4,349,317	-		GFF4349	0.17	+0.3
4,349,318	+		GFF4349	0.18	-1.4
4,349,322	-		GFF4349	0.18	+0.1
4,349,322	-		GFF4349	0.18	-0.4
4,349,322	-		GFF4349	0.18	-1.2
4,349,322	-		GFF4349	0.18	-1.7
4,349,324	+		GFF4349	0.19	+0.5
4,349,332	-		GFF4349	0.21	-1.8
4,349,335	+		GFF4349	0.21	+0.1
4,349,340	+		GFF4349	0.22	-0.1
4,349,355	+		GFF4349	0.25	-0.4
4,349,367	-		GFF4349	0.28	-2.1
4,349,369	-		GFF4349	0.28	+0.1
4,349,369	-		GFF4349	0.28	+0.4
4,349,369	-		GFF4349	0.28	-1.7
4,349,369	-		GFF4349	0.28	-1.6
4,349,378	-		GFF4349	0.30	-1.1
4,349,388	+		GFF4349	0.32	+0.3
4,349,396	-		GFF4349	0.34	-0.1
4,349,396	-		GFF4349	0.34	-0.5
4,349,398	+		GFF4349	0.34	-0.4
4,349,403	+		GFF4349	0.35	+0.2
4,349,403	+		GFF4349	0.35	-0.5
4,349,403	+		GFF4349	0.35	+0.6
4,349,403	+		GFF4349	0.35	-2.3
4,349,403	+		GFF4349	0.35	+0.0
4,349,403	+		GFF4349	0.35	-1.6
4,349,403	+		GFF4349	0.35	-0.4
4,349,403	+		GFF4349	0.35	-1.0
4,349,403	+		GFF4349	0.35	+0.9
4,349,403	+		GFF4349	0.35	-0.2
4,349,403	+		GFF4349	0.35	+1.0
4,349,403	+		GFF4349	0.35	-1.6
4,349,403	+		GFF4349	0.35	+1.7
4,349,403	+		GFF4349	0.35	-0.0
4,349,403	+		GFF4349	0.35	-0.4
4,349,403	+		GFF4349	0.35	-0.7
4,349,406	-		GFF4349	0.36	+0.8
4,349,406	-		GFF4349	0.36	+1.0
4,349,408	+		GFF4349	0.36	-0.1
4,349,411	-		GFF4349	0.37	+0.3
4,349,411	-		GFF4349	0.37	-1.1
4,349,411	-		GFF4349	0.37	-0.3
4,349,411	-		GFF4349	0.37	+0.4
4,349,411	-		GFF4349	0.37	+0.2
4,349,411	-		GFF4349	0.37	+1.9
4,349,411	-		GFF4349	0.37	-0.1
4,349,411	-		GFF4349	0.37	-2.8
4,349,411	-		GFF4349	0.37	-1.7
4,349,411	-		GFF4349	0.37	+0.2
4,349,411	-		GFF4349	0.37	-0.6
4,349,413	+		GFF4349	0.37	-2.7
4,349,413	+		GFF4349	0.37	-2.2
4,349,413	+		GFF4349	0.37	-1.2
4,349,416	-		GFF4349	0.38	+0.6
4,349,416	-		GFF4349	0.38	-3.4
4,349,416	-		GFF4349	0.38	-1.3
4,349,421	-		GFF4349	0.39	+0.3
4,349,421	-		GFF4349	0.39	-0.8
4,349,441	+		GFF4349	0.43	-0.5
4,349,441	+		GFF4349	0.43	-1.2
4,349,444	-		GFF4349	0.43	+0.0
4,349,449	-		GFF4349	0.44	+0.6
4,349,469	+		GFF4349	0.48	+0.4
4,349,473	+		GFF4349	0.49	+0.6
4,349,473	+		GFF4349	0.49	-0.1
4,349,473	+		GFF4349	0.49	+0.1
4,349,500	-		GFF4349	0.55	-2.1
4,349,508	+		GFF4349	0.56	+0.2
4,349,508	+		GFF4349	0.56	+0.7
4,349,508	+		GFF4349	0.56	-0.5
4,349,508	+		GFF4349	0.56	+0.9
4,349,510	-		GFF4349	0.57	-0.9
4,349,516	-		GFF4349	0.58	-1.6
4,349,516	-		GFF4349	0.58	+0.6
4,349,516	-		GFF4349	0.58	-1.4
4,349,516	-		GFF4349	0.58	+0.0
4,349,516	-		GFF4349	0.58	-0.2
4,349,516	-		GFF4349	0.58	-0.7
4,349,516	-		GFF4349	0.58	-0.4
4,349,516	-		GFF4349	0.58	-1.0
4,349,516	-		GFF4349	0.58	+0.2
4,349,516	-		GFF4349	0.58	+0.2
4,349,523	-		GFF4349	0.59	-2.6
4,349,527	+		GFF4349	0.60	-2.2
4,349,531	-		GFF4349	0.61	-2.8
4,349,533	-		GFF4349	0.61	+0.8
4,349,533	-		GFF4349	0.61	-2.2
4,349,535	-		GFF4349	0.62	-0.4
4,349,572	+		GFF4349	0.69	-0.7
4,349,580	-		GFF4349	0.71	-2.4
4,349,580	-		GFF4349	0.71	-0.1
4,349,590	-		GFF4349	0.73	-1.9
4,349,590	-		GFF4349	0.73	-1.8
4,349,599	-		GFF4349	0.75	-0.3
4,349,606	+		GFF4349	0.76	+0.2
4,349,614	-		GFF4349	0.78	+0.3
4,349,614	-		GFF4349	0.78	-0.2
4,349,614	-		GFF4349	0.78	-0.7
4,349,616	+		GFF4349	0.78	+0.0
4,349,622	-		GFF4349	0.79	+0.1
4,349,659	-		GFF4349	0.87	+0.1
4,349,660	+		GFF4349	0.87	-0.3
4,349,668	-		GFF4349	0.89	-1.4
4,349,668	-		GFF4349	0.89	-1.4
4,349,693	+				-1.2
4,349,693	+				-0.1
4,349,693	+				-1.4
4,349,693	+				-0.1
4,349,693	+				+0.6
4,349,701	+				+1.1
4,349,701	+				-0.4
4,349,709	-				-0.0
4,349,730	+				-0.3
4,349,732	+				+0.8
4,349,738	-				+0.1
4,349,740	-				+1.4
4,349,740	-				-1.0
4,349,779	+				+1.0
4,349,781	+				-0.7
4,349,789	-				+0.1
4,349,792	+				+0.2
4,349,797	+				+0.4
4,349,800	-				-1.3
4,349,805	-				-2.2
4,349,805	-				-1.6
4,349,805	-				+0.0
4,349,805	-				-1.4
4,349,805	-				+0.4
4,349,814	+				-1.3
4,349,831	+				+1.5
4,349,832	+				-0.1
4,349,832	+				-1.2
4,349,832	+				+0.9
4,349,832	+				-1.4
4,349,832	+				-0.1
4,349,832	+				-1.0
4,349,832	+				+0.4
4,349,832	+				+0.7
4,349,832	+				-0.6
4,349,832	+				+0.6
4,349,832	+				-0.2
4,349,832	+				-0.6
4,349,832	+				+1.0
4,349,832	+				+0.1
4,349,832	+				-0.5
4,349,832	+				+0.9
4,349,839	-				+1.1
4,349,840	-				-1.7
4,349,840	-				-1.7
4,349,840	-				-0.2
4,349,840	-				-2.0
4,349,840	-				-1.5
4,349,840	-				+1.1
4,349,840	-				+0.6
4,349,840	-				+1.4
4,349,840	-				+0.6
4,349,840	-				+0.7
4,349,840	-				-1.1
4,349,840	-				-0.3
4,349,840	-				-1.6
4,349,840	-				-1.6
4,349,840	-				+0.4
4,349,840	-				+0.2
4,349,842	+				-1.3
4,349,845	-				-1.2
4,349,852	+		GFF4350	0.10	+0.6
4,349,863	+		GFF4350	0.11	-0.8
4,349,863	+		GFF4350	0.11	-0.2
4,349,863	+		GFF4350	0.11	-0.8
4,349,863	+		GFF4350	0.11	-0.2
4,349,868	+		GFF4350	0.12	+0.0
4,349,868	+		GFF4350	0.12	-1.4
4,349,868	+		GFF4350	0.12	-0.1
4,349,871	+		GFF4350	0.12	+1.0
4,349,871	-		GFF4350	0.12	+0.8
4,349,871	-		GFF4350	0.12	+0.9
4,349,871	-		GFF4350	0.12	+0.0
4,349,871	-		GFF4350	0.12	-0.0
4,349,871	-		GFF4350	0.12	+0.3
4,349,871	-		GFF4350	0.12	+0.1
4,349,898	-		GFF4350	0.14	+1.5
4,349,904	+		GFF4350	0.15	+0.0
4,349,938	+		GFF4350	0.17	+1.2
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