Strain Fitness in Sphingobium sp. HT1-2 around GFF4340

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,341,080	-				-0.0
4,341,080	-				-0.9
4,341,084	+				+0.6
4,341,084	+				-0.7
4,341,084	+				-0.0
4,341,092	-				-1.0
4,341,092	-				+0.9
4,341,092	-				+0.7
4,341,092	-				-1.0
4,341,092	-				+0.1
4,341,092	-				-1.7
4,341,092	-				+0.1
4,341,092	-				-0.4
4,341,092	-				-0.5
4,341,093	+				+0.1
4,341,110	+				-1.4
4,341,110	+				+0.1
4,341,110	+				+0.0
4,341,118	-				-1.3
4,341,118	-				+0.2
4,341,121	+				-0.1
4,341,124	-				+0.4
4,341,142	+				-2.8
4,341,165	-				+0.8
4,341,174	+				-0.7
4,341,174	+				-0.2
4,341,176	+				-0.2
4,341,176	+				+0.5
4,341,176	+				-0.1
4,341,176	+				-1.9
4,341,184	-				-2.0
4,341,184	-				-1.2
4,341,184	-				+0.8
4,341,184	-				-0.8
4,341,184	-				+0.4
4,341,197	-				-1.4
4,341,207	-				+0.9
4,341,209	+				-0.5
4,341,209	+				+0.4
4,341,209	+				-0.6
4,341,216	+				+0.6
4,341,216	+				-0.4
4,341,217	-				-0.8
4,341,223	+				-1.8
4,341,226	-				-0.3
4,341,229	-				+0.4
4,341,254	-				+0.3
4,341,260	+				-1.0
4,341,260	+				+0.2
4,341,260	+				+0.4
4,341,260	+				-1.4
4,341,260	+				-1.6
4,341,265	+				-1.0
4,341,268	-				+0.0
4,341,268	-				-1.1
4,341,268	-				-0.4
4,341,268	-				+0.9
4,341,268	-				-0.3
4,341,273	-				-0.1
4,341,273	-				+0.2
4,341,303	+		GFF4338	0.14	-0.9
4,341,311	-		GFF4338	0.16	-0.6
4,341,327	+		GFF4338	0.22	-1.9
4,341,358	-		GFF4338	0.32	+0.4
4,341,358	-		GFF4338	0.32	-0.7
4,341,358	-		GFF4338	0.32	+0.7
4,341,363	+		GFF4338	0.34	-0.9
4,341,379	+		GFF4338	0.39	+0.9
4,341,380	+		GFF4338	0.39	+0.2
4,341,380	+		GFF4338	0.39	-0.8
4,341,387	+		GFF4338	0.42	+0.6
4,341,387	+		GFF4338	0.42	+0.5
4,341,387	+		GFF4338	0.42	+0.6
4,341,395	+		GFF4338	0.44	-2.2
4,341,433	-		GFF4338	0.57	+1.0
4,341,455	+		GFF4338	0.64	+0.8
4,341,459	+		GFF4338	0.66	-0.5
4,341,467	-		GFF4338	0.68	-1.7
4,341,475	+		GFF4338	0.71	+0.8
4,341,494	+		GFF4338	0.77	-0.2
4,341,541	-				-0.8
4,341,555	+				-0.7
4,341,555	+				-0.2
4,341,563	-				+0.8
4,341,565	+				+1.2
4,341,565	+				-0.4
4,341,571	+				+0.8
4,341,571	+				-0.0
4,341,572	+				-0.2
4,341,573	-				+0.5
4,341,573	-				+0.6
4,341,573	-				+1.0
4,341,573	-				+0.1
4,341,573	-				-2.4
4,341,580	-				+0.1
4,341,615	+				+0.9
4,341,626	-				-0.8
4,341,641	+				-0.7
4,341,647	-				-0.1
4,341,647	-				+0.6
4,341,652	+				+0.8
4,341,652	-				+0.1
4,341,660	-				-1.8
4,341,660	-				-1.2
4,341,662	-				-1.6
4,341,677	+				+0.1
4,341,677	+				-2.1
4,341,685	-				-0.4
4,341,685	-				+0.1
4,341,685	-				-0.4
4,341,685	-				-2.3
4,341,685	-				-1.0
4,341,685	-				-0.6
4,341,688	-				-0.6
4,341,690	-				-2.0
4,341,695	+				-0.1
4,341,695	+				-0.8
4,341,695	+				-1.4
4,341,703	-				-1.4
4,341,703	-				+0.6
4,341,703	-				-0.5
4,341,726	+				+0.3
4,341,728	-				-0.9
4,341,734	-				-0.0
4,341,764	+				+1.1
4,341,771	+				+1.3
4,341,772	-				+1.0
4,341,779	-				-2.2
4,341,793	+				+0.3
4,341,793	+				-1.8
4,341,793	+				+0.1
4,341,793	+				-1.6
4,341,793	+				+0.6
4,341,801	-				-0.9
4,341,816	+				+0.2
4,341,824	-				-0.8
4,341,824	-				-2.0
4,341,839	-		GFF4339	0.14	-1.9
4,341,844	-		GFF4339	0.16	-0.6
4,341,861	+		GFF4339	0.26	+0.4
4,341,869	-		GFF4339	0.31	-0.7
4,341,871	+		GFF4339	0.32	-0.7
4,341,891	+		GFF4339	0.43	-1.1
4,341,952	+		GFF4339	0.77	+1.6
4,341,958	-		GFF4339	0.81	-2.7
4,341,993	-				+0.6
4,341,998	-				+0.7
4,342,008	-				-0.5
4,342,013	+				-0.0
4,342,013	-				-0.8
4,342,016	+				-0.5
4,342,026	+				-0.6
4,342,029	-				-1.4
4,342,034	-				-0.3
4,342,042	-				+0.9
4,342,104	-				-1.4
4,342,117	+				-0.1
4,342,117	-				+0.9
4,342,123	+				+0.3
4,342,126	-				-0.9
4,342,132	+				+0.6
4,342,132	+				+0.3
4,342,132	+				-1.6
4,342,132	+				-1.6
4,342,132	+				-1.0
4,342,140	-				-1.6
4,342,140	-				-2.1
4,342,140	-				-1.2
4,342,140	-				+0.1
4,342,150	+				-3.0
4,342,155	+				+0.1
4,342,155	+				-0.7
4,342,155	+				+0.2
4,342,158	-				-1.7
4,342,158	-				-0.4
4,342,163	-				+0.2
4,342,165	+				-0.9
4,342,165	+				+0.5
4,342,165	+				+0.5
4,342,165	+				+1.3
4,342,165	+				-1.6
4,342,165	+				+1.1
4,342,165	+				-0.6
4,342,165	+				-0.9
4,342,165	+				-0.5
4,342,165	+				-0.4
4,342,173	-				-0.9
4,342,173	-				-0.6
4,342,173	-				-0.2
4,342,173	-				-0.4
4,342,173	-				-0.4
4,342,173	-				+0.1
4,342,173	-				-0.1
4,342,180	+				+0.2
4,342,182	-				-0.5
4,342,193	+				-2.1
4,342,195	+				-0.6
4,342,199	+				-2.4
4,342,203	-				-1.0
4,342,209	-				+0.2
4,342,209	-				+0.4
4,342,222	+		GFF4340	0.11	+0.6
4,342,222	+		GFF4340	0.11	-0.8
4,342,230	-		GFF4340	0.11	-0.4
4,342,240	-		GFF4340	0.12	-1.1
4,342,304	+		GFF4340	0.17	+1.3
4,342,312	-		GFF4340	0.18	+0.3
4,342,312	-		GFF4340	0.18	-1.2
4,342,348	-		GFF4340	0.20	-0.8
4,342,356	+		GFF4340	0.21	-0.3
4,342,357	-		GFF4340	0.21	+0.8
4,342,364	-		GFF4340	0.21	-0.0
4,342,379	+		GFF4340	0.22	+0.4
4,342,392	+		GFF4340	0.23	+1.2
4,342,392	-		GFF4340	0.23	+0.8
4,342,394	+		GFF4340	0.24	+0.4
4,342,400	-		GFF4340	0.24	+0.5
4,342,400	-		GFF4340	0.24	-0.2
4,342,402	+		GFF4340	0.24	-0.3
4,342,402	-		GFF4340	0.24	+0.2
4,342,410	-		GFF4340	0.25	+0.3
4,342,416	+		GFF4340	0.25	-0.3
4,342,438	+		GFF4340	0.27	-0.6
4,342,446	-		GFF4340	0.27	-0.2
4,342,446	-		GFF4340	0.27	+0.5
4,342,455	-		GFF4340	0.28	+0.9
4,342,470	+		GFF4340	0.29	-0.4
4,342,486	-		GFF4340	0.30	-1.6
4,342,503	-		GFF4340	0.32	-1.0
4,342,528	+		GFF4340	0.33	-0.3
4,342,528	+		GFF4340	0.33	-1.2
4,342,528	+		GFF4340	0.33	+0.3
4,342,528	+		GFF4340	0.33	-1.1
4,342,536	-		GFF4340	0.34	-0.9
4,342,536	-		GFF4340	0.34	-0.5
4,342,536	-		GFF4340	0.34	+0.6
4,342,536	-		GFF4340	0.34	-0.9
4,342,536	-		GFF4340	0.34	+0.9
4,342,536	-		GFF4340	0.34	-0.7
4,342,536	-		GFF4340	0.34	+0.6
4,342,536	-		GFF4340	0.34	-1.1
4,342,536	-		GFF4340	0.34	-0.9
4,342,542	+		GFF4340	0.34	+0.2
4,342,542	+		GFF4340	0.34	-0.5
4,342,542	+		GFF4340	0.34	-0.4
4,342,542	+		GFF4340	0.34	-0.6
4,342,542	+		GFF4340	0.34	-0.6
4,342,550	-		GFF4340	0.35	+0.9
4,342,550	-		GFF4340	0.35	+1.2
4,342,550	-		GFF4340	0.35	-1.6
4,342,550	-		GFF4340	0.35	-2.1
4,342,560	-		GFF4340	0.36	-1.4
4,342,581	+		GFF4340	0.37	-1.1
4,342,583	+		GFF4340	0.37	+0.1
4,342,591	-		GFF4340	0.38	+0.5
4,342,591	-		GFF4340	0.38	-0.3
4,342,620	-		GFF4340	0.40	+0.5
4,342,620	-		GFF4340	0.40	-1.2
4,342,641	-		GFF4340	0.42	-0.2
4,342,656	+		GFF4340	0.43	-2.1
4,342,656	+		GFF4340	0.43	+0.0
4,342,673	+		GFF4340	0.44	-1.1
4,342,673	+		GFF4340	0.44	+0.2
4,342,673	+		GFF4340	0.44	+0.0
4,342,673	+		GFF4340	0.44	-0.0
4,342,678	+		GFF4340	0.44	+1.2
4,342,678	+		GFF4340	0.44	-2.2
4,342,681	-		GFF4340	0.45	-0.9
4,342,686	-		GFF4340	0.45	+0.8
4,342,686	-		GFF4340	0.45	+0.0
4,342,714	+		GFF4340	0.47	-0.7
4,342,714	+		GFF4340	0.47	-1.0
4,342,714	+		GFF4340	0.47	-1.9
4,342,714	+		GFF4340	0.47	-0.7
4,342,715	+		GFF4340	0.47	+0.9
4,342,722	-		GFF4340	0.48	-0.2
4,342,722	-		GFF4340	0.48	+0.3
4,342,722	-		GFF4340	0.48	-0.5
4,342,730	+		GFF4340	0.48	-0.6
4,342,749	+		GFF4340	0.50	+0.2
4,342,766	+		GFF4340	0.51	-0.4
4,342,774	-		GFF4340	0.52	-1.6
4,342,806	+		GFF4340	0.54	-0.6
4,342,809	-		GFF4340	0.54	-1.6
4,342,809	-		GFF4340	0.54	-1.4
4,342,809	-		GFF4340	0.54	+0.4
4,342,811	+		GFF4340	0.54	+0.3
4,342,811	+		GFF4340	0.54	-0.6
4,342,811	+		GFF4340	0.54	+0.2
4,342,814	-		GFF4340	0.54	-3.0
4,342,816	+		GFF4340	0.55	-1.0
4,342,819	-		GFF4340	0.55	-0.9
4,342,819	-		GFF4340	0.55	-0.1
4,342,819	-		GFF4340	0.55	-2.9
4,342,819	-		GFF4340	0.55	-1.0
4,342,819	-		GFF4340	0.55	-2.6
4,342,824	-		GFF4340	0.55	-1.1
4,342,851	-		GFF4340	0.57	-1.7
4,342,864	-		GFF4340	0.58	+0.1
4,342,883	+		GFF4340	0.60	-0.2
4,342,912	+		GFF4340	0.62	-0.2
4,342,912	+		GFF4340	0.62	-0.7
4,342,912	+		GFF4340	0.62	-0.8
4,342,912	+		GFF4340	0.62	-0.1
4,342,912	+		GFF4340	0.62	-2.0
4,342,912	+		GFF4340	0.62	-0.4
4,342,912	+		GFF4340	0.62	-1.1
4,342,912	+		GFF4340	0.62	-0.5
4,342,912	+		GFF4340	0.62	+0.0
4,342,912	+		GFF4340	0.62	-1.3
4,342,912	+		GFF4340	0.62	-0.5
4,342,912	+		GFF4340	0.62	+0.2
4,342,912	+		GFF4340	0.62	+0.5
4,342,912	+		GFF4340	0.62	-1.2
4,342,912	+		GFF4340	0.62	-1.1
4,342,920	-		GFF4340	0.62	+0.7
4,342,920	-		GFF4340	0.62	+1.4
4,342,920	-		GFF4340	0.62	+0.3
4,342,920	-		GFF4340	0.62	+0.1
4,342,920	-		GFF4340	0.62	-0.4
4,342,920	-		GFF4340	0.62	+1.1
4,342,920	-		GFF4340	0.62	-0.3
4,342,920	-		GFF4340	0.62	+0.3
4,342,920	-		GFF4340	0.62	-1.8
4,342,920	-		GFF4340	0.62	+0.8
4,342,920	-		GFF4340	0.62	+1.0
4,342,920	-		GFF4340	0.62	+0.5
4,342,920	-		GFF4340	0.62	-1.3
4,342,931	+		GFF4340	0.63	-0.1
4,342,936	+		GFF4340	0.63	-1.6
4,342,944	-		GFF4340	0.64	-0.6
4,342,945	-		GFF4340	0.64	+0.9
4,342,945	-		GFF4340	0.64	-0.3
4,342,951	-		GFF4340	0.65	-1.0
4,342,970	+		GFF4340	0.66	-0.3
4,342,981	+		GFF4340	0.67	+0.5
4,342,989	-		GFF4340	0.67	+0.6
4,343,038	-		GFF4340	0.71	-1.0
4,343,047	+		GFF4340	0.72	+0.2
4,343,049	+		GFF4340	0.72	+0.5
4,343,070	-		GFF4340	0.73	-0.6
4,343,076	+		GFF4340	0.74	+0.8
4,343,076	+		GFF4340	0.74	-0.8
4,343,076	+		GFF4340	0.74	+1.5
4,343,076	+		GFF4340	0.74	+0.6
4,343,076	+		GFF4340	0.74	-1.4
4,343,076	+		GFF4340	0.74	+0.3
4,343,084	-		GFF4340	0.74	+0.4
4,343,084	-		GFF4340	0.74	-1.2
4,343,089	+		GFF4340	0.75	-0.4
4,343,097	-		GFF4340	0.75	+0.4
4,343,097	-		GFF4340	0.75	+0.4
4,343,128	+		GFF4340	0.78	+0.4
4,343,195	-		GFF4340	0.82	-0.8
4,343,212	+		GFF4340	0.84	-3.0
4,343,235	+		GFF4340	0.85	+0.1
4,343,237	-		GFF4340	0.86	-0.2
4,343,261	+		GFF4340	0.87	+0.3
4,343,264	-		GFF4340	0.88	-1.0
4,343,269	-		GFF4340	0.88	+0.7
4,343,269	-		GFF4340	0.88	-0.5
4,343,269	-		GFF4340	0.88	-1.6
4,343,269	-		GFF4340	0.88	-0.1
4,343,269	-		GFF4340	0.88	+0.1
4,343,269	-		GFF4340	0.88	-1.6
4,343,269	-		GFF4340	0.88	+0.2
4,343,269	-		GFF4340	0.88	+0.2
4,343,269	-		GFF4340	0.88	+0.2
4,343,279	-		GFF4340	0.89	-0.6
4,343,281	+		GFF4340	0.89	-1.4
4,343,335	+				+0.4
4,343,335	+				+0.3
4,343,341	-				+0.7
4,343,343	-				-1.3
4,343,343	-				-1.0
4,343,354	+				+0.2
4,343,354	+				-1.8
4,343,354	+				-2.2
4,343,354	+				+0.3
4,343,354	+				-1.1
4,343,354	+				-1.9
4,343,354	+				-1.9
4,343,354	+				+0.4
4,343,361	-				+0.3
4,343,362	-				-2.4
4,343,362	-				+0.6
4,343,362	-				-1.4
4,343,362	-				+0.1
4,343,362	-				-1.1
4,343,362	-				-0.1
4,343,362	-				+0.7
4,343,362	-				+0.2
4,343,362	-				+0.1
4,343,364	-				+0.0
4,343,376	-				-0.6
4,343,389	+				-0.7
4,343,408	-				-1.0
4,343,421	-				+0.2
4,343,442	+				+0.1
4,343,450	-				-0.3
4,343,454	+				-0.8
4,343,456	+				-0.5
4,343,462	-				+0.4
4,343,462	-				-0.2
4,343,462	-				-1.3
4,343,462	-				-0.5
4,343,464	-				-1.1
4,343,469	+				-0.1
4,343,482	+				-0.6
4,343,482	+				-2.1
4,343,489	+				-1.0
4,343,489	+				-0.1
4,343,490	-				-1.6
4,343,490	-				-1.0
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