Strain Fitness in Sphingobium sp. HT1-2 around GFF4257

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,272,641	+		GFF4255	0.71	+0.4
4,272,660	-		GFF4255	0.75	+1.0
4,272,660	-		GFF4255	0.75	-1.0
4,272,668	+		GFF4255	0.76	-1.3
4,272,668	+		GFF4255	0.76	-0.6
4,272,673	+		GFF4255	0.77	+1.7
4,272,673	+		GFF4255	0.77	+0.2
4,272,681	-		GFF4255	0.79	-2.5
4,272,698	+		GFF4255	0.82	+0.3
4,272,698	+		GFF4255	0.82	-0.3
4,272,708	+		GFF4255	0.84	-1.1
4,272,708	+		GFF4255	0.84	-1.9
4,272,716	-		GFF4255	0.85	-0.3
4,272,718	+		GFF4255	0.86	-1.0
4,272,748	+				-0.9
4,272,770	-				-0.6
4,272,788	+				+1.5
4,272,788	+				-0.6
4,272,802	-				+0.9
4,272,802	-				-0.0
4,272,802	-				+0.8
4,272,802	-				+0.6
4,272,845	+				-1.2
4,272,847	+				-0.7
4,272,849	+				+0.5
4,272,879	-				+0.8
4,272,883	+				-0.8
4,272,891	-				-1.0
4,272,891	-				+0.0
4,272,893	+				-0.9
4,272,895	+				-0.1
4,272,902	+				-1.5
4,272,902	+				-0.3
4,272,902	+				-0.7
4,272,903	+				-0.7
4,272,903	+				+0.2
4,272,903	+				-0.3
4,272,903	+				-2.8
4,272,910	+				+1.7
4,272,910	-				-1.1
4,272,910	-				+0.5
4,272,910	-				+0.1
4,272,911	-				-1.0
4,272,911	-				-0.3
4,272,911	-				-2.1
4,272,911	-				-2.1
4,272,929	+				+0.6
4,272,945	-				-0.2
4,272,956	+				-0.5
4,272,964	-				+1.3
4,272,964	-				-1.0
4,272,964	-				-0.1
4,272,990	-		GFF4256	0.15	+0.0
4,272,995	-		GFF4256	0.16	-0.7
4,272,999	+		GFF4256	0.16	+0.1
4,273,038	+		GFF4256	0.24	-0.2
4,273,038	+		GFF4256	0.24	-1.0
4,273,038	-		GFF4256	0.24	+0.6
4,273,068	+		GFF4256	0.30	+0.3
4,273,069	+		GFF4256	0.30	-0.1
4,273,069	+		GFF4256	0.30	-1.0
4,273,069	+		GFF4256	0.30	+0.7
4,273,069	+		GFF4256	0.30	+0.2
4,273,069	+		GFF4256	0.30	+0.4
4,273,069	+		GFF4256	0.30	-1.6
4,273,069	+		GFF4256	0.30	+0.0
4,273,069	+		GFF4256	0.30	-0.1
4,273,069	+		GFF4256	0.30	-0.1
4,273,077	-		GFF4256	0.31	-0.2
4,273,077	-		GFF4256	0.31	+0.4
4,273,093	+		GFF4256	0.34	-1.0
4,273,093	+		GFF4256	0.34	-0.1
4,273,093	+		GFF4256	0.34	+0.9
4,273,095	+		GFF4256	0.35	+0.2
4,273,096	-		GFF4256	0.35	-0.6
4,273,128	+		GFF4256	0.41	+0.0
4,273,143	+		GFF4256	0.44	+1.0
4,273,143	+		GFF4256	0.44	-1.1
4,273,143	+		GFF4256	0.44	-0.6
4,273,143	+		GFF4256	0.44	-0.7
4,273,143	+		GFF4256	0.44	-0.9
4,273,143	+		GFF4256	0.44	-2.1
4,273,151	-		GFF4256	0.45	-2.5
4,273,151	-		GFF4256	0.45	+0.7
4,273,151	-		GFF4256	0.45	-0.6
4,273,161	-		GFF4256	0.47	-1.2
4,273,177	-		GFF4256	0.50	+0.2
4,273,197	-		GFF4256	0.54	+0.1
4,273,215	-		GFF4256	0.58	-0.6
4,273,227	+		GFF4256	0.60	+0.5
4,273,243	-		GFF4256	0.63	-0.4
4,273,259	+		GFF4256	0.66	+0.2
4,273,259	+		GFF4256	0.66	-0.1
4,273,278	+		GFF4256	0.70	-0.8
4,273,278	+		GFF4256	0.70	-3.1
4,273,278	+		GFF4256	0.70	-0.1
4,273,286	+		GFF4256	0.71	+0.0
4,273,286	-		GFF4256	0.71	-1.1
4,273,315	+		GFF4256	0.77	+1.2
4,273,315	+		GFF4256	0.77	+0.2
4,273,315	+		GFF4256	0.77	-0.4
4,273,315	+		GFF4256	0.77	-0.3
4,273,315	+		GFF4256	0.77	+0.1
4,273,315	+		GFF4256	0.77	-2.3
4,273,321	+		GFF4256	0.78	-0.8
4,273,323	-		GFF4256	0.78	-1.6
4,273,323	-		GFF4256	0.78	-1.1
4,273,323	-		GFF4256	0.78	+1.8
4,273,344	-		GFF4256	0.82	-1.1
4,273,350	-		GFF4256	0.83	+1.2
4,273,352	+		GFF4256	0.84	-0.8
4,273,365	-		GFF4256	0.86	+0.0
4,273,406	+				+0.9
4,273,406	+				-0.6
4,273,411	+				-0.4
4,273,411	+				-1.1
4,273,411	+				+0.4
4,273,411	+				+0.8
4,273,411	+				-0.8
4,273,411	+				-0.7
4,273,411	+				-0.3
4,273,411	+				-0.7
4,273,411	+				-0.8
4,273,411	+				-0.3
4,273,411	+				-0.0
4,273,411	+				+0.9
4,273,411	+				-1.5
4,273,411	+				+0.7
4,273,411	+				+0.1
4,273,411	+				+0.2
4,273,411	+				-0.4
4,273,411	+				+0.3
4,273,411	+				-0.8
4,273,411	+				+0.4
4,273,411	+				-0.6
4,273,411	+				-2.3
4,273,411	+				-0.9
4,273,411	+				-1.0
4,273,411	+				+0.0
4,273,411	+				-0.4
4,273,411	+				-0.1
4,273,411	+				-2.1
4,273,412	-				+0.2
4,273,414	-				-0.2
4,273,414	-				+1.0
4,273,419	-				-1.3
4,273,419	-				+0.9
4,273,419	-				+0.1
4,273,419	-				-1.7
4,273,419	-				-0.1
4,273,419	-				-1.1
4,273,419	-				+0.5
4,273,419	-				-1.9
4,273,419	-				+1.0
4,273,419	-				+0.4
4,273,419	-				+0.2
4,273,419	-				-0.6
4,273,419	-				-1.8
4,273,419	-				-0.6
4,273,419	-				+1.4
4,273,419	-				+1.4
4,273,419	-				-0.6
4,273,419	-				-0.4
4,273,419	-				-0.1
4,273,419	-				-0.9
4,273,419	-				-0.2
4,273,419	-				-1.0
4,273,419	-				-1.3
4,273,419	-				+0.1
4,273,419	-				-1.8
4,273,419	-				+0.1
4,273,436	+				+1.6
4,273,436	+				-1.5
4,273,438	+				-1.5
4,273,446	+				+0.1
4,273,454	-				-1.3
4,273,454	-				-0.4
4,273,457	+				-0.6
4,273,464	-				-1.3
4,273,465	+				-0.5
4,273,517	-				+0.8
4,273,607	+				+0.7
4,273,607	+				-1.8
4,273,611	+				+1.8
4,273,640	+				-0.8
4,273,689	+		GFF4257	0.14	-0.2
4,273,701	-		GFF4257	0.16	-0.9
4,273,707	+		GFF4257	0.18	+1.2
4,273,715	-		GFF4257	0.19	-1.8
4,273,721	-		GFF4257	0.21	-1.6
4,273,725	+		GFF4257	0.21	+1.0
4,273,728	-		GFF4257	0.22	+0.6
4,273,729	-		GFF4257	0.22	+0.2
4,273,733	-		GFF4257	0.23	-0.9
4,273,733	-		GFF4257	0.23	-1.7
4,273,761	+		GFF4257	0.29	+0.6
4,273,761	+		GFF4257	0.29	+1.1
4,273,761	+		GFF4257	0.29	+0.9
4,273,761	+		GFF4257	0.29	-1.1
4,273,761	+		GFF4257	0.29	-1.1
4,273,769	-		GFF4257	0.31	+0.0
4,273,769	-		GFF4257	0.31	+0.0
4,273,769	-		GFF4257	0.31	+1.4
4,273,769	-		GFF4257	0.31	-1.7
4,273,775	-		GFF4257	0.32	+0.5
4,273,777	+		GFF4257	0.32	+1.0
4,273,779	+		GFF4257	0.33	-0.3
4,273,784	+		GFF4257	0.34	-0.3
4,273,784	+		GFF4257	0.34	-2.3
4,273,789	+		GFF4257	0.35	-0.1
4,273,789	+		GFF4257	0.35	+0.1
4,273,789	+		GFF4257	0.35	+0.1
4,273,789	+		GFF4257	0.35	-1.7
4,273,789	+		GFF4257	0.35	+0.3
4,273,789	+		GFF4257	0.35	-0.2
4,273,789	+		GFF4257	0.35	-0.1
4,273,789	+		GFF4257	0.35	-1.0
4,273,791	-		GFF4257	0.35	+0.0
4,273,797	-		GFF4257	0.37	+1.2
4,273,797	-		GFF4257	0.37	-1.0
4,273,797	-		GFF4257	0.37	+0.2
4,273,797	-		GFF4257	0.37	-0.1
4,273,797	-		GFF4257	0.37	-2.3
4,273,797	-		GFF4257	0.37	+0.0
4,273,797	-		GFF4257	0.37	-0.5
4,273,797	-		GFF4257	0.37	-0.0
4,273,800	+		GFF4257	0.37	+0.4
4,273,800	+		GFF4257	0.37	+0.5
4,273,816	+		GFF4257	0.41	-1.1
4,273,816	+		GFF4257	0.41	-1.0
4,273,820	-		GFF4257	0.42	-0.8
4,273,824	-		GFF4257	0.43	+0.6
4,273,824	-		GFF4257	0.43	-1.0
4,273,832	+		GFF4257	0.44	-1.7
4,273,840	-		GFF4257	0.46	+0.3
4,273,883	-		GFF4257	0.55	+1.3
4,274,055	+				-0.1
4,274,055	+				-1.2
4,274,055	+				-2.0
4,274,055	+				-0.4
4,274,055	+				-0.1
4,274,055	+				-0.6
4,274,055	+				+0.0
4,274,055	+				-1.2
4,274,055	+				+1.2
4,274,055	+				-0.1
4,274,055	+				-0.9
4,274,055	+				+0.1
4,274,055	+				+1.1
4,274,055	+				+1.0
4,274,055	+				+0.1
4,274,055	+				+0.5
4,274,055	+				-0.1
4,274,065	+				-0.4
4,274,091	+				-0.1
4,274,100	-				-1.0
4,274,106	+				+1.3
4,274,146	+				+0.4
4,274,150	-				+1.1
4,274,156	+				+1.1
4,274,156	+				+0.2
4,274,490	-		GFF4258	0.79	+0.1
4,274,518	+		GFF4258	0.88	+0.2
4,274,518	+		GFF4258	0.88	+0.5
4,274,526	-				-1.1
4,274,526	-				-0.1
4,274,535	-				+0.5
4,274,537	-				+0.8
4,274,537	-				+1.3
4,274,552	+				+0.5
4,274,558	+				-0.3
4,274,560	+				-0.1
4,274,566	-				+0.4
4,274,578	+				-1.3
4,274,578	+				-3.3
4,274,578	+				+0.7
4,274,578	+				+0.0
4,274,578	+				+0.2
4,274,578	+				+0.4
4,274,578	+				+0.9
4,274,578	-				-0.9
4,274,584	+				-0.0
4,274,584	-				-1.3
4,274,586	-				-0.2
4,274,586	-				+0.1
4,274,586	-				+0.5
4,274,586	-				-2.0
4,274,612	-				-1.3
4,274,613	+				-0.1
4,274,613	-				-2.0
4,274,613	-				-1.0
4,274,626	+				-0.4
4,274,630	+				-0.1
4,274,630	+				-1.4
4,274,630	+				+0.4
4,274,631	+				-1.5
4,274,636	-				-2.8
4,274,636	-				+0.4
4,274,638	-				-0.1
4,274,639	-				+0.8
4,274,656	-				+0.9
4,274,664	+				-1.7
4,274,674	+				+0.2
4,274,686	+				+1.1
4,274,693	+				+1.5
4,274,694	-				-1.1
4,274,701	-				-2.3
4,274,701	-				-1.1
4,274,718	+				+0.4
4,274,718	+				-2.6
4,274,719	+				-0.6
4,274,727	-				+0.6
4,274,727	-				-0.4
4,274,727	-				+0.9
4,274,727	-				-0.1
4,274,737	+				+0.3
4,274,745	-				-0.3
4,274,745	-				-2.1
4,274,745	-				+0.8
4,274,745	-				+0.3
4,274,752	-				+0.5
4,274,766	+				-2.3
4,274,767	-				-1.1
4,274,774	-				+0.8
4,274,774	-				+0.1
4,274,774	-				-2.7
4,274,774	-				-0.1
4,274,800	-				+1.5
4,274,808	+				-1.2
4,274,808	+				-1.5
4,274,808	+				-0.5
4,274,816	-				-0.1
4,274,816	-				-0.6
4,274,848	+				-0.4
4,274,848	+				+1.0
4,274,851	-				-0.6
4,274,851	-				-0.1
4,274,856	-				-0.4
4,274,856	-				-0.3
4,274,856	-				-1.8
4,274,858	-				-1.8
4,274,878	+				+1.1
4,274,911	-				-0.3
4,274,912	+				-0.0
4,274,912	+				-2.0
4,274,912	+				-1.3
4,274,912	+				+0.4
4,274,912	+				-1.0
4,274,912	+				-0.3
4,274,912	+				-2.2
4,274,912	+				-0.6
4,274,912	+				-0.2
4,274,913	-				-1.3
4,274,913	-				+0.2
4,274,913	-				+0.2
4,274,920	-				-0.5
4,274,920	-				-0.1
4,274,943	-				-2.0
4,274,956	-		GFF4259	0.10	+0.1
4,274,981	-		GFF4259	0.14	+0.0
4,274,988	+		GFF4259	0.14	-0.4
4,275,007	+		GFF4259	0.17	-0.5
4,275,007	+		GFF4259	0.17	-1.1
4,275,007	+		GFF4259	0.17	+0.2
4,275,007	+		GFF4259	0.17	+1.1
4,275,015	-		GFF4259	0.18	-0.2
4,275,017	-		GFF4259	0.18	+0.8
4,275,037	-		GFF4259	0.21	+0.5
4,275,053	+		GFF4259	0.23	-0.3
4,275,053	+		GFF4259	0.23	-1.4
4,275,054	+		GFF4259	0.23	-0.3
4,275,061	-		GFF4259	0.24	+0.1
4,275,061	-		GFF4259	0.24	-0.7
4,275,064	+		GFF4259	0.25	-0.2
4,275,084	-		GFF4259	0.27	-0.5
4,275,087	+		GFF4259	0.28	+1.1