Strain Fitness in Sphingobium sp. HT1-2 around GFF4244

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,263,270	-		GFF4243	0.47	-1.0
4,263,270	-		GFF4243	0.47	+0.0
4,263,271	-		GFF4243	0.47	-0.3
4,263,293	+		GFF4243	0.48	+0.5
4,263,301	+		GFF4243	0.48	-1.5
4,263,311	+		GFF4243	0.49	+1.3
4,263,311	+		GFF4243	0.49	+0.1
4,263,311	+		GFF4243	0.49	-0.4
4,263,319	-		GFF4243	0.50	-0.9
4,263,319	-		GFF4243	0.50	+0.4
4,263,319	-		GFF4243	0.50	-0.1
4,263,319	-		GFF4243	0.50	+0.3
4,263,319	-		GFF4243	0.50	-0.7
4,263,324	-		GFF4243	0.50	+0.8
4,263,334	+		GFF4243	0.50	+0.2
4,263,349	-		GFF4243	0.51	+0.4
4,263,383	+		GFF4243	0.53	-0.6
4,263,391	-		GFF4243	0.54	-0.6
4,263,391	-		GFF4243	0.54	-0.4
4,263,391	-		GFF4243	0.54	-1.4
4,263,407	+		GFF4243	0.55	-0.0
4,263,407	+		GFF4243	0.55	-1.6
4,263,407	+		GFF4243	0.55	-0.1
4,263,414	-		GFF4243	0.55	+0.0
4,263,422	-		GFF4243	0.56	-0.6
4,263,431	-		GFF4243	0.56	-0.0
4,263,439	-		GFF4243	0.57	+0.0
4,263,441	-		GFF4243	0.57	+0.0
4,263,441	-		GFF4243	0.57	+1.0
4,263,441	-		GFF4243	0.57	-1.8
4,263,441	-		GFF4243	0.57	+0.1
4,263,453	+		GFF4243	0.58	-0.7
4,263,453	+		GFF4243	0.58	+0.8
4,263,459	-		GFF4243	0.58	+1.3
4,263,461	-		GFF4243	0.58	+1.3
4,263,484	-		GFF4243	0.59	+0.8
4,263,485	+		GFF4243	0.60	+0.3
4,263,540	-		GFF4243	0.63	-0.3
4,263,546	+		GFF4243	0.63	+0.2
4,263,548	+		GFF4243	0.63	+0.8
4,263,554	-		GFF4243	0.64	-0.7
4,263,555	-		GFF4243	0.64	+0.6
4,263,555	-		GFF4243	0.64	-1.3
4,263,577	+		GFF4243	0.65	+0.6
4,263,594	+		GFF4243	0.66	+0.4
4,263,611	-		GFF4243	0.67	-0.1
4,263,641	+		GFF4243	0.69	+0.1
4,263,654	-		GFF4243	0.70	-0.4
4,263,675	-		GFF4243	0.71	-0.1
4,263,678	-		GFF4243	0.71	+0.7
4,263,680	-		GFF4243	0.71	-1.3
4,263,680	-		GFF4243	0.71	+0.2
4,263,692	+		GFF4243	0.72	-1.6
4,263,692	+		GFF4243	0.72	-0.3
4,263,692	+		GFF4243	0.72	+0.4
4,263,692	+		GFF4243	0.72	+0.4
4,263,692	+		GFF4243	0.72	-2.2
4,263,700	-		GFF4243	0.72	-0.5
4,263,700	-		GFF4243	0.72	+0.1
4,263,700	-		GFF4243	0.72	-1.6
4,263,700	-		GFF4243	0.72	-0.2
4,263,700	-		GFF4243	0.72	+1.0
4,263,700	-		GFF4243	0.72	-1.9
4,263,700	-		GFF4243	0.72	-1.6
4,263,735	+		GFF4243	0.75	-0.4
4,263,737	+		GFF4243	0.75	+0.6
4,263,743	-		GFF4243	0.75	+0.1
4,263,745	+		GFF4243	0.75	+0.7
4,263,750	-		GFF4243	0.75	+0.3
4,263,790	-		GFF4243	0.78	-0.1
4,263,798	-		GFF4243	0.78	-1.6
4,263,800	-		GFF4243	0.78	-0.8
4,263,807	-		GFF4243	0.79	-0.7
4,263,820	+		GFF4243	0.80	+0.4
4,263,828	-		GFF4243	0.80	-0.3
4,263,828	-		GFF4243	0.80	+0.4
4,263,828	-		GFF4243	0.80	+0.2
4,263,833	+		GFF4243	0.80	+0.5
4,263,855	-		GFF4243	0.82	-0.6
4,263,857	+		GFF4243	0.82	+0.8
4,263,860	-		GFF4243	0.82	+0.1
4,263,865	-		GFF4243	0.82	+1.1
4,263,865	-		GFF4243	0.82	-1.0
4,263,867	+		GFF4243	0.82	-2.3
4,263,867	+		GFF4243	0.82	-2.5
4,263,867	+		GFF4243	0.82	+0.3
4,263,867	+		GFF4243	0.82	+1.2
4,263,870	-		GFF4243	0.83	+0.1
4,263,870	-		GFF4243	0.83	+1.2
4,263,875	-		GFF4243	0.83	+0.2
4,263,875	-		GFF4243	0.83	-2.0
4,263,875	-		GFF4243	0.83	-0.4
4,263,875	-		GFF4243	0.83	+1.0
4,263,875	-		GFF4243	0.83	+0.4
4,263,891	+		GFF4243	0.84	-1.5
4,263,898	+		GFF4243	0.84	-1.8
4,263,898	+		GFF4243	0.84	+0.8
4,263,899	-		GFF4243	0.84	+0.6
4,263,906	+		GFF4243	0.85	-0.7
4,263,906	-		GFF4243	0.85	+0.2
4,263,908	+		GFF4243	0.85	+0.5
4,263,911	-		GFF4243	0.85	-0.3
4,263,944	-		GFF4243	0.87	-0.1
4,263,962	-		GFF4243	0.88	-0.2
4,263,978	+		GFF4243	0.89	+0.1
4,263,983	+		GFF4243	0.89	+1.1
4,263,986	-		GFF4243	0.90	+0.4
4,263,991	-		GFF4243	0.90	-1.3
4,263,998	+				+1.5
4,263,998	+				-1.4
4,264,006	-				-1.7
4,264,011	-				-2.4
4,264,011	-				+0.5
4,264,016	-				-2.2
4,264,023	+				-0.6
4,264,023	+				-0.7
4,264,023	+				+0.5
4,264,025	+				+0.1
4,264,025	+				-1.2
4,264,031	-				+1.0
4,264,035	+				-0.0
4,264,038	-				+0.1
4,264,044	+				+0.4
4,264,044	+				+0.5
4,264,047	-				-0.5
4,264,050	-				+0.3
4,264,050	-				+0.1
4,264,052	-				+0.7
4,264,052	-				-1.3
4,264,052	-				+0.7
4,264,052	-				+0.5
4,264,060	+				-0.4
4,264,099	+				+0.7
4,264,099	+				+0.1
4,264,099	+				-0.9
4,264,100	-				-0.9
4,264,104	+				-0.4
4,264,105	-				-1.3
4,264,107	-				-1.8
4,264,107	-				+0.1
4,264,112	-				-1.8
4,264,117	+				+0.3
4,264,117	+				-0.1
4,264,117	+				-1.3
4,264,117	+				-0.5
4,264,117	+				+0.1
4,264,125	-				+0.1
4,264,125	-				+0.1
4,264,125	-				-0.7
4,264,125	-				-0.3
4,264,153	+				-0.2
4,264,161	-				+0.4
4,264,183	+				+1.0
4,264,191	-				-0.3
4,264,215	+				+0.0
4,264,215	+				+0.3
4,264,222	-				-0.1
4,264,251	+				-0.2
4,264,256	+				-1.1
4,264,256	+				+0.3
4,264,256	+				+0.6
4,264,264	-				+1.3
4,264,264	-				-1.6
4,264,276	-				+0.0
4,264,283	+				-0.8
4,264,284	-				+0.8
4,264,288	+				+0.3
4,264,293	+				+0.3
4,264,301	-				+1.1
4,264,301	-				-0.8
4,264,329	+				+2.4
4,264,362	+				-0.0
4,264,362	+				+0.1
4,264,370	-				+0.2
4,264,370	-				-0.3
4,264,370	-				-2.3
4,264,370	-				-0.2
4,264,370	-				-0.3
4,264,374	+				+0.1
4,264,382	-				+0.0
4,264,382	-				+0.5
4,264,382	-				+0.2
4,264,382	-				-0.9
4,264,382	-				+0.4
4,264,401	+				-2.5
4,264,408	-		GFF4244	0.10	-0.3
4,264,409	-		GFF4244	0.10	-0.4
4,264,409	-		GFF4244	0.10	+0.8
4,264,416	-		GFF4244	0.11	+0.3
4,264,446	+		GFF4244	0.13	-0.5
4,264,446	+		GFF4244	0.13	-0.2
4,264,446	+		GFF4244	0.13	-0.5
4,264,446	+		GFF4244	0.13	-0.0
4,264,446	+		GFF4244	0.13	-0.7
4,264,454	-		GFF4244	0.14	-1.3
4,264,468	+		GFF4244	0.15	+0.7
4,264,468	+		GFF4244	0.15	-1.1
4,264,470	+		GFF4244	0.15	+0.2
4,264,473	+		GFF4244	0.15	-1.0
4,264,481	-		GFF4244	0.16	-0.7
4,264,494	+		GFF4244	0.17	-1.6
4,264,496	+		GFF4244	0.17	-0.7
4,264,496	+		GFF4244	0.17	-0.9
4,264,496	+		GFF4244	0.17	-1.1
4,264,496	+		GFF4244	0.17	-0.6
4,264,496	+		GFF4244	0.17	-0.3
4,264,496	+		GFF4244	0.17	-1.9
4,264,496	+		GFF4244	0.17	-1.3
4,264,496	+		GFF4244	0.17	+1.1
4,264,496	+		GFF4244	0.17	+1.2
4,264,496	+		GFF4244	0.17	+0.2
4,264,496	+		GFF4244	0.17	-0.3
4,264,496	+		GFF4244	0.17	-0.5
4,264,496	-		GFF4244	0.17	-0.0
4,264,501	+		GFF4244	0.17	+0.5
4,264,502	-		GFF4244	0.17	-0.1
4,264,504	-		GFF4244	0.17	+0.3
4,264,504	-		GFF4244	0.17	+0.5
4,264,504	-		GFF4244	0.17	-1.7
4,264,504	-		GFF4244	0.17	+2.0
4,264,504	-		GFF4244	0.17	+1.3
4,264,504	-		GFF4244	0.17	+2.3
4,264,504	-		GFF4244	0.17	-0.7
4,264,504	-		GFF4244	0.17	+0.4
4,264,504	-		GFF4244	0.17	+1.1
4,264,504	-		GFF4244	0.17	-0.3
4,264,506	+		GFF4244	0.18	-0.6
4,264,511	+		GFF4244	0.18	-0.2
4,264,519	-		GFF4244	0.18	-0.5
4,264,519	-		GFF4244	0.18	-0.0
4,264,521	+		GFF4244	0.19	-1.1
4,264,521	-		GFF4244	0.19	+0.5
4,264,529	+		GFF4244	0.19	+1.4
4,264,529	+		GFF4244	0.19	-0.1
4,264,530	+		GFF4244	0.19	+0.2
4,264,531	+		GFF4244	0.19	-0.3
4,264,531	+		GFF4244	0.19	-0.2
4,264,531	+		GFF4244	0.19	+0.7
4,264,538	-		GFF4244	0.20	-1.3
4,264,539	-		GFF4244	0.20	-0.3
4,264,539	-		GFF4244	0.20	-2.3
4,264,545	+		GFF4244	0.20	+1.3
4,264,545	+		GFF4244	0.20	-0.8
4,264,545	+		GFF4244	0.20	+1.9
4,264,553	-		GFF4244	0.21	+0.7
4,264,553	-		GFF4244	0.21	-0.5
4,264,557	+		GFF4244	0.21	-1.3
4,264,559	-		GFF4244	0.21	+0.6
4,264,560	-		GFF4244	0.22	-0.8
4,264,565	-		GFF4244	0.22	-0.3
4,264,583	-		GFF4244	0.23	-0.1
4,264,610	+		GFF4244	0.25	-0.9
4,264,617	+		GFF4244	0.26	-0.7
4,264,617	+		GFF4244	0.26	-0.7
4,264,617	+		GFF4244	0.26	-0.5
4,264,617	+		GFF4244	0.26	+0.5
4,264,617	+		GFF4244	0.26	-1.1
4,264,617	+		GFF4244	0.26	+0.4
4,264,617	+		GFF4244	0.26	+0.2
4,264,617	+		GFF4244	0.26	+0.9
4,264,617	+		GFF4244	0.26	+0.5
4,264,617	+		GFF4244	0.26	-0.4
4,264,617	+		GFF4244	0.26	-0.2
4,264,617	+		GFF4244	0.26	-1.3
4,264,617	+		GFF4244	0.26	-0.6
4,264,617	+		GFF4244	0.26	-0.4
4,264,617	+		GFF4244	0.26	-0.3
4,264,617	+		GFF4244	0.26	+0.4
4,264,617	+		GFF4244	0.26	+0.6
4,264,617	+		GFF4244	0.26	+0.6
4,264,617	+		GFF4244	0.26	+0.7
4,264,623	+		GFF4244	0.26	+0.9
4,264,625	-		GFF4244	0.26	+0.0
4,264,625	-		GFF4244	0.26	+0.0
4,264,625	-		GFF4244	0.26	-0.7
4,264,625	-		GFF4244	0.26	-0.1
4,264,625	-		GFF4244	0.26	+0.3
4,264,625	-		GFF4244	0.26	-0.2
4,264,625	-		GFF4244	0.26	+1.0
4,264,625	-		GFF4244	0.26	+0.2
4,264,625	-		GFF4244	0.26	-1.2
4,264,625	-		GFF4244	0.26	+0.2
4,264,625	-		GFF4244	0.26	+0.2
4,264,625	-		GFF4244	0.26	-0.5
4,264,625	-		GFF4244	0.26	-0.6
4,264,625	-		GFF4244	0.26	+0.1
4,264,625	-		GFF4244	0.26	+0.8
4,264,625	-		GFF4244	0.26	+0.2
4,264,625	-		GFF4244	0.26	-1.8
4,264,625	-		GFF4244	0.26	+0.3
4,264,630	-		GFF4244	0.27	+0.3
4,264,630	-		GFF4244	0.27	-1.4
4,264,630	-		GFF4244	0.27	-0.1
4,264,631	-		GFF4244	0.27	+0.9
4,264,632	+		GFF4244	0.27	-0.5
4,264,632	+		GFF4244	0.27	+0.3
4,264,637	+		GFF4244	0.27	+1.3
4,264,637	+		GFF4244	0.27	-1.7
4,264,640	-		GFF4244	0.27	+0.0
4,264,644	+		GFF4244	0.28	+0.7
4,264,645	-		GFF4244	0.28	+0.1
4,264,658	+		GFF4244	0.29	+0.9
4,264,659	-		GFF4244	0.29	-2.7
4,264,666	+		GFF4244	0.29	+0.3
4,264,666	+		GFF4244	0.29	-0.0
4,264,668	+		GFF4244	0.29	+0.1
4,264,668	+		GFF4244	0.29	+0.4
4,264,668	+		GFF4244	0.29	-0.6
4,264,668	+		GFF4244	0.29	+0.9
4,264,668	+		GFF4244	0.29	+0.9
4,264,668	+		GFF4244	0.29	-1.5
4,264,668	+		GFF4244	0.29	-0.4
4,264,674	-		GFF4244	0.30	-0.2
4,264,674	-		GFF4244	0.30	-0.3
4,264,676	-		GFF4244	0.30	+0.0
4,264,676	-		GFF4244	0.30	+1.1
4,264,676	-		GFF4244	0.30	+1.0
4,264,676	-		GFF4244	0.30	-0.3
4,264,676	-		GFF4244	0.30	+0.6
4,264,702	+		GFF4244	0.32	-0.0
4,264,705	-		GFF4244	0.32	-0.1
4,264,712	+		GFF4244	0.33	-0.7
4,264,722	+		GFF4244	0.33	-0.6
4,264,756	+		GFF4244	0.36	+0.2
4,264,756	+		GFF4244	0.36	-0.6
4,264,764	-		GFF4244	0.37	-1.3
4,264,764	-		GFF4244	0.37	-1.2
4,264,764	-		GFF4244	0.37	-0.5
4,264,773	+		GFF4244	0.37	+0.8
4,264,780	+		GFF4244	0.38	+0.1
4,264,789	+		GFF4244	0.38	-0.0
4,264,789	-		GFF4244	0.38	-0.3
4,264,805	+		GFF4244	0.40	-0.2
4,264,812	+		GFF4244	0.40	+0.1
4,264,813	+		GFF4244	0.40	-1.9
4,264,813	+		GFF4244	0.40	+1.5
4,264,813	+		GFF4244	0.40	+0.1
4,264,813	+		GFF4244	0.40	+0.7
4,264,813	+		GFF4244	0.40	-1.3
4,264,820	-		GFF4244	0.41	-2.0
4,264,821	-		GFF4244	0.41	-1.0
4,264,821	-		GFF4244	0.41	+0.9
4,264,821	-		GFF4244	0.41	+0.2
4,264,821	-		GFF4244	0.41	-1.8
4,264,821	-		GFF4244	0.41	-0.8
4,264,821	-		GFF4244	0.41	-0.3
4,264,821	-		GFF4244	0.41	-0.4
4,264,821	-		GFF4244	0.41	-1.6
4,264,821	-		GFF4244	0.41	-1.4
4,264,826	-		GFF4244	0.41	+0.6
4,264,826	-		GFF4244	0.41	-0.1
4,264,854	+		GFF4244	0.43	+0.9
4,264,861	-		GFF4244	0.44	+0.0
4,264,862	-		GFF4244	0.44	+1.5
4,264,887	-		GFF4244	0.46	+0.5
4,264,902	+		GFF4244	0.47	+0.4
4,264,913	+		GFF4244	0.48	+0.4
4,264,918	+		GFF4244	0.48	-0.6
4,264,918	+		GFF4244	0.48	-0.1
4,264,924	+		GFF4244	0.48	-1.8
4,264,950	+		GFF4244	0.50	+0.4
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