Strain Fitness in Sphingobium sp. HT1-2 around GFF4200

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,223,433	+		GFF4199	0.42	-0.9
4,223,441	-		GFF4199	0.43	-1.1
4,223,455	+		GFF4199	0.43	-0.0
4,223,463	-		GFF4199	0.44	-0.2
4,223,472	-		GFF4199	0.45	-0.6
4,223,481	+		GFF4199	0.45	+0.1
4,223,488	+		GFF4199	0.46	+0.7
4,223,488	+		GFF4199	0.46	-2.8
4,223,488	+		GFF4199	0.46	-0.2
4,223,489	-		GFF4199	0.46	-0.5
4,223,489	-		GFF4199	0.46	-0.0
4,223,489	-		GFF4199	0.46	+0.0
4,223,489	-		GFF4199	0.46	-0.5
4,223,496	+		GFF4199	0.46	-0.5
4,223,496	-		GFF4199	0.46	-0.2
4,223,496	-		GFF4199	0.46	+0.8
4,223,496	-		GFF4199	0.46	-0.2
4,223,496	-		GFF4199	0.46	-2.3
4,223,509	+		GFF4199	0.47	+1.2
4,223,524	+		GFF4199	0.48	+0.4
4,223,532	-		GFF4199	0.48	+0.7
4,223,565	-		GFF4199	0.51	-0.3
4,223,588	+		GFF4199	0.52	-1.4
4,223,603	+		GFF4199	0.53	-1.9
4,223,604	-		GFF4199	0.53	-0.1
4,223,663	+		GFF4199	0.57	-0.9
4,223,663	-		GFF4199	0.57	+0.2
4,223,663	-		GFF4199	0.57	-2.2
4,223,663	-		GFF4199	0.57	-0.5
4,223,698	+		GFF4199	0.59	-0.7
4,223,699	+		GFF4199	0.59	+0.8
4,223,699	+		GFF4199	0.59	+0.1
4,223,699	+		GFF4199	0.59	-0.7
4,223,699	+		GFF4199	0.59	-0.1
4,223,699	+		GFF4199	0.59	-0.6
4,223,699	+		GFF4199	0.59	-0.6
4,223,699	+		GFF4199	0.59	-0.5
4,223,699	+		GFF4199	0.59	+0.1
4,223,699	+		GFF4199	0.59	-2.1
4,223,699	+		GFF4199	0.59	-2.0
4,223,699	+		GFF4199	0.59	+1.1
4,223,699	+		GFF4199	0.59	-0.4
4,223,699	+		GFF4199	0.59	-0.0
4,223,699	+		GFF4199	0.59	-0.8
4,223,699	+		GFF4199	0.59	-0.0
4,223,704	+		GFF4199	0.60	-1.0
4,223,707	-		GFF4199	0.60	+0.2
4,223,707	-		GFF4199	0.60	-4.3
4,223,707	-		GFF4199	0.60	-0.2
4,223,707	-		GFF4199	0.60	+0.8
4,223,707	-		GFF4199	0.60	-1.9
4,223,707	-		GFF4199	0.60	-1.6
4,223,707	-		GFF4199	0.60	-0.6
4,223,707	-		GFF4199	0.60	-0.3
4,223,707	-		GFF4199	0.60	-0.6
4,223,709	+		GFF4199	0.60	+1.0
4,223,709	+		GFF4199	0.60	-1.7
4,223,709	+		GFF4199	0.60	-1.0
4,223,709	+		GFF4199	0.60	-0.6
4,223,709	+		GFF4199	0.60	-1.6
4,223,709	+		GFF4199	0.60	+0.2
4,223,709	+		GFF4199	0.60	-0.7
4,223,755	+		GFF4199	0.63	+0.2
4,223,764	-		GFF4199	0.64	-1.3
4,223,803	+		GFF4199	0.66	-0.7
4,223,806	+		GFF4199	0.66	-0.9
4,223,835	+		GFF4199	0.68	-0.4
4,223,848	-		GFF4199	0.69	-0.3
4,223,897	-		GFF4199	0.72	-0.2
4,223,921	+		GFF4199	0.74	-0.6
4,223,921	+		GFF4199	0.74	-0.6
4,223,921	+		GFF4199	0.74	-1.1
4,223,921	+		GFF4199	0.74	+1.1
4,223,921	+		GFF4199	0.74	-0.8
4,223,921	+		GFF4199	0.74	-0.3
4,223,921	+		GFF4199	0.74	-0.7
4,223,921	+		GFF4199	0.74	+0.7
4,223,923	+		GFF4199	0.74	-0.3
4,223,924	-		GFF4199	0.74	+0.7
4,223,929	-		GFF4199	0.74	-1.7
4,223,929	-		GFF4199	0.74	-0.8
4,223,929	-		GFF4199	0.74	-0.5
4,223,929	-		GFF4199	0.74	-0.1
4,223,929	-		GFF4199	0.74	+0.9
4,223,929	-		GFF4199	0.74	+0.3
4,223,929	-		GFF4199	0.74	-1.0
4,223,929	-		GFF4199	0.74	-1.7
4,223,929	-		GFF4199	0.74	-2.2
4,223,929	-		GFF4199	0.74	-1.5
4,223,929	-		GFF4199	0.74	+1.9
4,223,937	-		GFF4199	0.75	-0.7
4,223,982	-		GFF4199	0.78	-0.1
4,223,987	+		GFF4199	0.78	-2.1
4,223,987	+		GFF4199	0.78	+0.6
4,223,987	+		GFF4199	0.78	-1.1
4,223,987	+		GFF4199	0.78	-0.3
4,223,995	-		GFF4199	0.79	+1.1
4,223,995	-		GFF4199	0.79	-1.3
4,223,995	-		GFF4199	0.79	-1.3
4,223,995	-		GFF4199	0.79	-0.1
4,223,995	-		GFF4199	0.79	+0.7
4,223,995	-		GFF4199	0.79	-1.0
4,223,995	-		GFF4199	0.79	-0.2
4,224,051	+		GFF4199	0.82	-1.4
4,224,051	+		GFF4199	0.82	-1.8
4,224,051	+		GFF4199	0.82	+0.5
4,224,051	+		GFF4199	0.82	+0.7
4,224,056	+		GFF4199	0.83	+0.2
4,224,056	+		GFF4199	0.83	+1.4
4,224,056	+		GFF4199	0.83	+1.3
4,224,056	+		GFF4199	0.83	+0.0
4,224,056	+		GFF4199	0.83	-2.4
4,224,056	+		GFF4199	0.83	-0.8
4,224,056	+		GFF4199	0.83	-1.4
4,224,056	+		GFF4199	0.83	+0.3
4,224,059	-		GFF4199	0.83	-0.4
4,224,059	-		GFF4199	0.83	-1.6
4,224,059	-		GFF4199	0.83	-0.8
4,224,059	-		GFF4199	0.83	-0.5
4,224,059	-		GFF4199	0.83	-0.9
4,224,059	-		GFF4199	0.83	+0.6
4,224,059	-		GFF4199	0.83	+0.7
4,224,059	-		GFF4199	0.83	-0.6
4,224,059	-		GFF4199	0.83	-0.1
4,224,059	-		GFF4199	0.83	-1.0
4,224,064	-		GFF4199	0.83	-1.4
4,224,064	-		GFF4199	0.83	+1.0
4,224,064	-		GFF4199	0.83	-0.6
4,224,064	-		GFF4199	0.83	-0.5
4,224,064	-		GFF4199	0.83	-0.1
4,224,064	-		GFF4199	0.83	-2.4
4,224,064	-		GFF4199	0.83	+0.8
4,224,064	-		GFF4199	0.83	-0.3
4,224,064	-		GFF4199	0.83	+0.6
4,224,064	-		GFF4199	0.83	+0.0
4,224,064	-		GFF4199	0.83	-1.7
4,224,064	-		GFF4199	0.83	+1.4
4,224,064	-		GFF4199	0.83	-0.8
4,224,067	+		GFF4199	0.83	+0.6
4,224,067	+		GFF4199	0.83	-0.6
4,224,075	-		GFF4199	0.84	+1.3
4,224,075	-		GFF4199	0.84	-2.5
4,224,075	-		GFF4199	0.84	-2.6
4,224,089	+		GFF4199	0.85	+0.9
4,224,089	+		GFF4199	0.85	-0.7
4,224,089	+		GFF4199	0.85	-0.2
4,224,089	+		GFF4199	0.85	-0.4
4,224,090	-		GFF4199	0.85	+1.2
4,224,091	+		GFF4199	0.85	-0.6
4,224,097	-		GFF4199	0.85	-0.8
4,224,097	-		GFF4199	0.85	+0.1
4,224,097	-		GFF4199	0.85	+0.2
4,224,097	-		GFF4199	0.85	-0.2
4,224,097	-		GFF4199	0.85	-1.6
4,224,097	-		GFF4199	0.85	-0.1
4,224,099	+		GFF4199	0.86	+0.2
4,224,099	+		GFF4199	0.86	+0.5
4,224,107	-		GFF4199	0.86	+0.5
4,224,120	-		GFF4199	0.87	-0.2
4,224,120	-		GFF4199	0.87	-1.6
4,224,122	+		GFF4199	0.87	+1.3
4,224,122	+		GFF4199	0.87	+0.7
4,224,122	+		GFF4199	0.87	+0.0
4,224,130	-		GFF4199	0.88	-0.4
4,224,135	-		GFF4199	0.88	-0.4
4,224,139	+		GFF4199	0.88	-0.2
4,224,154	+		GFF4199	0.89	-1.0
4,224,196	+				+0.7
4,224,202	-				-0.5
4,224,202	-				-1.2
4,224,213	+				-1.1
4,224,236	+				-2.1
4,224,241	+				+0.4
4,224,306	+				-0.7
4,224,306	+				-0.2
4,224,306	+				+0.8
4,224,306	+				+1.0
4,224,306	+				-2.1
4,224,314	-				+0.3
4,224,314	-				+0.3
4,224,314	-				-0.2
4,224,314	-				-2.2
4,224,347	+				-1.7
4,224,355	-				+0.7
4,224,372	+				+0.3
4,224,385	+				-0.2
4,224,385	+				-0.9
4,224,399	-				+0.2
4,224,410	+				-0.4
4,224,410	+				-0.3
4,224,418	-				+0.4
4,224,418	-				+0.9
4,224,418	-				+0.2
4,224,512	+		GFF4200	0.29	+0.2
4,224,521	+		GFF4200	0.33	+0.7
4,224,552	+		GFF4200	0.44	-0.3
4,224,552	+		GFF4200	0.44	-1.9
4,224,627	+		GFF4200	0.71	-1.5
4,224,659	-		GFF4200	0.83	-1.3
4,224,673	+		GFF4200	0.88	-1.2
4,224,738	+				-0.6
4,224,738	+				-0.6
4,224,746	-				+0.4
4,224,746	-				+0.6
4,224,778	-				+0.0
4,224,828	+				-0.9
4,224,839	+				+0.9
4,224,854	+				-0.3
4,224,862	-				-0.1
4,224,862	-				-1.7
4,224,875	-				+0.7
4,225,076	+				-0.3
4,225,076	+				+1.3
4,225,084	-				-0.4
4,225,084	-				-0.4
4,225,101	+				+0.2
4,225,101	+				-0.3
4,225,109	-				+0.5
4,225,109	-				-0.6
4,225,170	-				+0.3
4,225,195	+				-1.6
4,225,214	+				-0.7
4,225,234	-				+0.2
4,225,259	-				+0.5
4,225,270	+				+0.9
4,225,270	+				+0.7
4,225,270	+				-0.6
4,225,270	+				-1.2
4,225,278	-				+0.7
4,225,278	-				-1.1
4,225,278	-				-1.3
4,225,278	-				-0.6
4,225,303	+				+0.6
4,225,330	+		GFF4202	0.13	-0.4
4,225,343	+		GFF4202	0.14	-1.2
4,225,348	-		GFF4202	0.15	+0.1
4,225,385	+		GFF4202	0.19	-1.8
4,225,385	+		GFF4202	0.19	-0.2
4,225,385	+		GFF4202	0.19	+0.8
4,225,385	+		GFF4202	0.19	-0.9
4,225,385	+		GFF4202	0.19	+0.4
4,225,385	+		GFF4202	0.19	-0.3
4,225,385	+		GFF4202	0.19	-1.5
4,225,385	+		GFF4202	0.19	+0.3
4,225,385	+		GFF4202	0.19	-0.7
4,225,385	+		GFF4202	0.19	+0.8
4,225,393	-		GFF4202	0.20	+0.5
4,225,393	-		GFF4202	0.20	-0.5
4,225,393	-		GFF4202	0.20	-1.0
4,225,393	-		GFF4202	0.20	+1.6
4,225,393	-		GFF4202	0.20	-0.0
4,225,393	-		GFF4202	0.20	-0.2
4,225,393	-		GFF4202	0.20	+1.0
4,225,407	+		GFF4202	0.22	+0.4
4,225,419	+		GFF4202	0.24	-2.7
4,225,419	+		GFF4202	0.24	+0.4
4,225,493	-		GFF4202	0.33	+0.0
4,225,569	-		GFF4202	0.42	-0.2
4,225,592	+		GFF4202	0.45	-1.5
4,225,618	+		GFF4202	0.48	+0.2
4,225,619	+		GFF4202	0.49	+0.0
4,225,621	-		GFF4202	0.49	-0.8
4,225,621	-		GFF4202	0.49	-2.8
4,225,636	-		GFF4202	0.51	-0.3
4,225,646	+		GFF4202	0.52	+0.6
4,225,646	+		GFF4202	0.52	+0.0
4,225,646	+		GFF4202	0.52	+0.9
4,225,646	+		GFF4202	0.52	+1.0
4,225,646	+		GFF4202	0.52	-1.0
4,225,646	+		GFF4202	0.52	+0.9
4,225,646	+		GFF4202	0.52	-0.6
4,225,654	-		GFF4202	0.53	-0.4
4,225,654	-		GFF4202	0.53	+0.9
4,225,654	-		GFF4202	0.53	-1.8
4,225,657	+		GFF4202	0.53	-0.2