Strain Fitness in Sphingobium sp. HT1-2 around GFF4165

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,185,841	+				+0.1
4,185,849	-				-0.2
4,185,861	-				-0.4
4,185,913	-				+0.1
4,185,918	+				+0.1
4,185,929	+				-0.2
4,185,929	+				-1.5
4,185,929	+				-2.0
4,185,935	+				+0.2
4,185,937	-				-1.1
4,185,937	-				-0.6
4,185,980	+				-0.4
4,186,009	-				+0.5
4,186,018	+				+0.5
4,186,024	-				-0.6
4,186,026	-				-1.9
4,186,060	+				-0.4
4,186,084	+		GFF4163	0.14	-0.5
4,186,102	+		GFF4163	0.19	-0.7
4,186,102	+		GFF4163	0.19	+0.0
4,186,118	-		GFF4163	0.24	+0.6
4,186,128	-		GFF4163	0.27	-1.9
4,186,141	+		GFF4163	0.30	-2.1
4,186,141	+		GFF4163	0.30	+0.2
4,186,153	+		GFF4163	0.34	-1.6
4,186,153	+		GFF4163	0.34	+1.0
4,186,159	-		GFF4163	0.36	-1.0
4,186,159	-		GFF4163	0.36	-0.6
4,186,161	+		GFF4163	0.36	-1.8
4,186,161	-		GFF4163	0.36	-1.2
4,186,170	+		GFF4163	0.39	+0.9
4,186,172	-		GFF4163	0.39	-0.3
4,186,173	-		GFF4163	0.40	-1.6
4,186,173	-		GFF4163	0.40	+0.4
4,186,183	-		GFF4163	0.42	-1.1
4,186,188	-		GFF4163	0.44	-0.1
4,186,207	-		GFF4163	0.49	-0.2
4,186,233	+		GFF4163	0.57	-0.9
4,186,245	+		GFF4163	0.60	-0.1
4,186,245	+		GFF4163	0.60	+0.4
4,186,245	+		GFF4163	0.60	-1.2
4,186,253	-		GFF4163	0.62	-0.3
4,186,253	-		GFF4163	0.62	-0.6
4,186,255	+		GFF4163	0.63	-0.9
4,186,255	+		GFF4163	0.63	+0.4
4,186,255	+		GFF4163	0.63	-0.5
4,186,255	+		GFF4163	0.63	+0.6
4,186,255	+		GFF4163	0.63	+0.8
4,186,255	+		GFF4163	0.63	-1.9
4,186,263	-		GFF4163	0.65	+0.8
4,186,263	-		GFF4163	0.65	-1.1
4,186,263	-		GFF4163	0.65	-2.7
4,186,263	-		GFF4163	0.65	+0.2
4,186,278	+		GFF4163	0.70	+1.2
4,186,278	+		GFF4163	0.70	-0.6
4,186,286	-		GFF4163	0.72	-0.1
4,186,286	-		GFF4163	0.72	+0.6
4,186,320	+		GFF4163	0.81	-0.1
4,186,328	-		GFF4163	0.84	-0.2
4,186,330	-		GFF4163	0.84	-1.4
4,186,345	-		GFF4163	0.89	-0.2
4,186,350	-				-0.2
4,186,352	+				-1.2
4,186,352	+				+0.9
4,186,360	-				-0.5
4,186,360	-				+1.5
4,186,360	-				+0.6
4,186,360	-				+1.5
4,186,360	-				-0.5
4,186,360	-				-0.8
4,186,360	-				+0.7
4,186,360	-				-0.5
4,186,360	-				-0.6
4,186,360	-				+2.0
4,186,368	+				-0.5
4,186,373	+				+0.2
4,186,373	+				+0.6
4,186,373	+				+1.5
4,186,373	+				-0.7
4,186,373	+				-1.5
4,186,373	+				-1.5
4,186,376	-				-2.1
4,186,381	-				+0.1
4,186,381	-				+1.1
4,186,381	-				+0.5
4,186,381	-				+0.4
4,186,381	-				+0.9
4,186,387	+				+0.1
4,186,821	-				-2.3
4,186,826	-				+0.1
4,186,826	-				-0.3
4,186,826	-				-0.8
4,186,831	+				+0.1
4,186,849	-				+0.8
4,186,851	+				+0.2
4,186,859	-				-0.2
4,186,859	-				-0.3
4,186,859	-				-2.1
4,186,890	+		GFF4165	0.12	+0.4
4,186,890	+		GFF4165	0.12	+0.3
4,186,890	+		GFF4165	0.12	-0.8
4,186,898	-		GFF4165	0.14	-2.7
4,186,898	-		GFF4165	0.14	-0.9
4,186,915	-		GFF4165	0.17	-0.5
4,186,925	-		GFF4165	0.19	-1.3
4,186,943	+		GFF4165	0.23	-2.2
4,186,946	-		GFF4165	0.24	+0.4
4,186,965	-		GFF4165	0.28	-0.6
4,186,973	+		GFF4165	0.30	-1.4
4,186,981	-		GFF4165	0.31	-0.2
4,186,981	-		GFF4165	0.31	+0.1
4,186,993	-		GFF4165	0.34	+0.3
4,187,006	+		GFF4165	0.37	-1.9
4,187,014	-		GFF4165	0.38	-0.3
4,187,030	+		GFF4165	0.42	-1.4
4,187,030	+		GFF4165	0.42	-2.0
4,187,084	+		GFF4165	0.53	-1.5
4,187,084	+		GFF4165	0.53	-2.5
4,187,104	+		GFF4165	0.58	-1.4
4,187,137	+		GFF4165	0.65	-1.8
4,187,140	-		GFF4165	0.65	-1.7
4,187,145	-		GFF4165	0.66	-1.5
4,187,145	-		GFF4165	0.66	+0.2
4,187,150	+		GFF4165	0.68	-1.4
4,187,150	+		GFF4165	0.68	-0.2
4,187,189	+		GFF4165	0.76	+0.2
4,187,189	+		GFF4165	0.76	-1.0
4,187,194	+		GFF4165	0.77	-1.0
4,187,202	-		GFF4165	0.79	-2.6
4,187,202	-		GFF4165	0.79	-0.6
4,187,202	-		GFF4165	0.79	-0.5
4,187,218	-		GFF4165	0.82	-1.5
4,187,272	+				-0.4
4,187,308	+				-1.4
4,187,327	+				+0.3
4,187,379	+				-3.4
4,187,379	+				-0.8
4,187,400	+				-1.2
4,187,400	+				+0.4
4,187,402	+				-0.3
4,187,402	+				+0.5
4,187,403	-				+0.4
4,187,410	-				+0.3
4,187,414	+				-1.2
4,187,427	-				+0.6
4,187,431	-				+0.2
4,187,436	-				-1.4
4,187,446	+				-1.9
4,187,451	-				-0.2
4,187,460	+				+0.5
4,187,465	+				+0.0
4,187,478	-				-1.5
4,187,496	+		GFF4166	0.11	-2.0
4,187,505	+		GFF4166	0.12	+0.2
4,187,505	+		GFF4166	0.12	-1.2
4,187,521	+		GFF4166	0.15	-0.6
4,187,537	-		GFF4166	0.18	-0.7
4,187,539	+		GFF4166	0.18	-0.1
4,187,539	+		GFF4166	0.18	+0.3
4,187,539	+		GFF4166	0.18	-0.2
4,187,539	+		GFF4166	0.18	+0.3
4,187,539	+		GFF4166	0.18	-0.1
4,187,542	-		GFF4166	0.18	-1.4
4,187,547	-		GFF4166	0.19	-0.5
4,187,547	-		GFF4166	0.19	+1.4
4,187,547	-		GFF4166	0.19	-0.1
4,187,547	-		GFF4166	0.19	+1.4
4,187,554	-		GFF4166	0.20	-0.3
4,187,556	+		GFF4166	0.21	-0.7
4,187,564	-		GFF4166	0.22	-0.7
4,187,578	-		GFF4166	0.24	+1.0
4,187,603	+		GFF4166	0.29	-0.1
4,187,603	+		GFF4166	0.29	+1.1
4,187,603	+		GFF4166	0.29	+0.7
4,187,611	-		GFF4166	0.30	+0.6
4,187,611	-		GFF4166	0.30	-0.5
4,187,611	-		GFF4166	0.30	-0.3
4,187,622	+		GFF4166	0.32	-0.6
4,187,630	-		GFF4166	0.33	+0.7
4,187,648	+		GFF4166	0.36	-0.1
4,187,657	+		GFF4166	0.38	-0.8
4,187,665	-		GFF4166	0.39	+0.5
4,187,665	-		GFF4166	0.39	+0.6
4,187,666	-		GFF4166	0.39	+0.4
4,187,680	+		GFF4166	0.42	+1.2
4,187,680	+		GFF4166	0.42	-0.9
4,187,688	+		GFF4166	0.43	+1.3
4,187,695	-		GFF4166	0.44	-0.4
4,187,723	+		GFF4166	0.49	-0.3
4,187,723	+		GFF4166	0.49	-0.8
4,187,731	-		GFF4166	0.50	-0.4
4,187,731	-		GFF4166	0.50	+0.2
4,187,733	+		GFF4166	0.50	+2.0
4,187,733	-		GFF4166	0.50	+1.6
4,187,733	-		GFF4166	0.50	-1.4
4,187,740	+		GFF4166	0.52	-0.0
4,187,740	+		GFF4166	0.52	+0.3
4,187,740	+		GFF4166	0.52	+1.7
4,187,748	-		GFF4166	0.53	-0.8
4,187,770	-		GFF4166	0.57	-0.2
4,187,847	-		GFF4166	0.70	-2.0
4,187,906	-		GFF4166	0.79	+0.3
4,187,977	+				-2.0
4,187,981	-				-0.3
4,187,994	+				-0.6
4,187,994	+				-1.0
4,188,025	+				-1.7
4,188,039	-				-0.5
4,188,093	+				-0.6
4,188,106	-				-1.4
4,188,117	+				-0.2
4,188,125	-				+0.8