Strain Fitness in Sphingobium sp. HT1-2 around GFF4123

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,146,432	-		GFF4122	0.47	+1.0
4,146,434	+		GFF4122	0.47	-0.8
4,146,483	-		GFF4122	0.50	-2.3
4,146,483	-		GFF4122	0.50	+0.8
4,146,485	+		GFF4122	0.50	+0.0
4,146,497	+		GFF4122	0.51	+0.4
4,146,502	+		GFF4122	0.51	-0.2
4,146,525	+		GFF4122	0.52	+1.5
4,146,536	-		GFF4122	0.53	-1.3
4,146,548	+		GFF4122	0.53	-0.8
4,146,548	+		GFF4122	0.53	-0.3
4,146,556	-		GFF4122	0.54	-0.4
4,146,556	-		GFF4122	0.54	-2.6
4,146,560	+		GFF4122	0.54	-0.5
4,146,565	+		GFF4122	0.54	-0.4
4,146,565	+		GFF4122	0.54	-1.2
4,146,573	-		GFF4122	0.55	-0.3
4,146,575	+		GFF4122	0.55	-0.6
4,146,575	+		GFF4122	0.55	-1.1
4,146,575	+		GFF4122	0.55	-1.1
4,146,575	+		GFF4122	0.55	-0.4
4,146,583	-		GFF4122	0.55	-1.4
4,146,583	-		GFF4122	0.55	-0.1
4,146,583	-		GFF4122	0.55	-1.1
4,146,614	+		GFF4122	0.57	-0.5
4,146,627	-		GFF4122	0.58	-0.5
4,146,640	+		GFF4122	0.58	-0.1
4,146,646	+		GFF4122	0.59	-0.6
4,146,647	-		GFF4122	0.59	+0.7
4,146,656	-		GFF4122	0.59	+0.9
4,146,656	-		GFF4122	0.59	+0.3
4,146,665	+		GFF4122	0.60	+0.2
4,146,673	-		GFF4122	0.60	+0.7
4,146,676	+		GFF4122	0.60	-1.3
4,146,676	+		GFF4122	0.60	+0.8
4,146,678	-		GFF4122	0.60	+0.9
4,146,684	-		GFF4122	0.61	-0.1
4,146,684	-		GFF4122	0.61	-0.4
4,146,684	-		GFF4122	0.61	-2.7
4,146,702	+		GFF4122	0.62	+0.4
4,146,706	+		GFF4122	0.62	-1.1
4,146,710	-		GFF4122	0.62	-0.2
4,146,712	+		GFF4122	0.62	-1.1
4,146,720	-		GFF4122	0.63	-2.0
4,146,720	-		GFF4122	0.63	-0.1
4,146,742	+		GFF4122	0.64	-0.1
4,146,748	+		GFF4122	0.64	-0.3
4,146,749	-		GFF4122	0.64	+0.2
4,146,749	-		GFF4122	0.64	-0.1
4,146,749	-		GFF4122	0.64	-0.6
4,146,753	+		GFF4122	0.64	-0.7
4,146,756	-		GFF4122	0.65	-0.9
4,146,773	+		GFF4122	0.65	+0.3
4,146,781	-		GFF4122	0.66	-0.9
4,146,781	-		GFF4122	0.66	+1.4
4,146,782	+		GFF4122	0.66	+0.8
4,146,787	+		GFF4122	0.66	+0.4
4,146,787	+		GFF4122	0.66	+1.0
4,146,787	+		GFF4122	0.66	+0.1
4,146,787	+		GFF4122	0.66	-0.2
4,146,787	+		GFF4122	0.66	+1.1
4,146,790	-		GFF4122	0.66	+0.3
4,146,805	+		GFF4122	0.67	-0.6
4,146,813	+		GFF4122	0.68	+0.3
4,146,820	+		GFF4122	0.68	-0.6
4,146,823	-		GFF4122	0.68	+0.9
4,146,823	-		GFF4122	0.68	-0.2
4,146,823	-		GFF4122	0.68	+0.1
4,146,830	+		GFF4122	0.69	+0.1
4,146,831	+		GFF4122	0.69	+2.0
4,146,832	-		GFF4122	0.69	-0.4
4,146,839	-		GFF4122	0.69	-0.1
4,146,841	+		GFF4122	0.69	-1.1
4,146,841	+		GFF4122	0.69	+0.6
4,146,841	+		GFF4122	0.69	-0.1
4,146,841	+		GFF4122	0.69	+0.1
4,146,841	+		GFF4122	0.69	-1.5
4,146,849	-		GFF4122	0.70	-0.5
4,146,849	-		GFF4122	0.70	+1.3
4,146,849	-		GFF4122	0.70	+0.7
4,146,849	-		GFF4122	0.70	-1.1
4,146,849	-		GFF4122	0.70	-1.8
4,146,849	-		GFF4122	0.70	+0.0
4,146,898	-		GFF4122	0.72	+0.6
4,146,898	-		GFF4122	0.72	+0.0
4,146,901	-		GFF4122	0.72	-0.3
4,146,914	-		GFF4122	0.73	+2.0
4,146,915	-		GFF4122	0.73	+1.2
4,146,916	-		GFF4122	0.73	-0.3
4,146,917	+		GFF4122	0.73	-0.3
4,146,917	+		GFF4122	0.73	-0.1
4,146,917	+		GFF4122	0.73	-0.4
4,146,917	+		GFF4122	0.73	+0.2
4,146,917	+		GFF4122	0.73	+0.5
4,146,917	+		GFF4122	0.73	-0.4
4,146,917	+		GFF4122	0.73	-0.0
4,146,917	+		GFF4122	0.73	+1.4
4,146,917	+		GFF4122	0.73	-0.1
4,146,917	+		GFF4122	0.73	-0.7
4,146,917	+		GFF4122	0.73	+0.2
4,146,917	+		GFF4122	0.73	-1.0
4,146,925	-		GFF4122	0.74	-1.1
4,146,925	-		GFF4122	0.74	-0.1
4,146,925	-		GFF4122	0.74	-0.6
4,146,925	-		GFF4122	0.74	-0.4
4,146,925	-		GFF4122	0.74	+0.7
4,146,925	-		GFF4122	0.74	+0.9
4,146,925	-		GFF4122	0.74	+1.5
4,146,925	-		GFF4122	0.74	+0.7
4,146,925	-		GFF4122	0.74	-2.3
4,146,925	-		GFF4122	0.74	+0.6
4,146,925	-		GFF4122	0.74	+1.0
4,146,925	-		GFF4122	0.74	+0.1
4,146,925	-		GFF4122	0.74	-0.3
4,146,925	-		GFF4122	0.74	-1.1
4,146,931	+		GFF4122	0.74	-1.7
4,146,946	+		GFF4122	0.75	-1.1
4,146,949	-		GFF4122	0.75	-1.4
4,146,949	-		GFF4122	0.75	+0.7
4,146,954	-		GFF4122	0.75	-0.5
4,146,974	-		GFF4122	0.76	-1.0
4,146,981	+		GFF4122	0.77	-0.7
4,146,988	+		GFF4122	0.77	-1.8
4,146,990	-		GFF4122	0.77	-1.0
4,147,003	-		GFF4122	0.78	-0.7
4,147,015	+		GFF4122	0.79	-0.4
4,147,018	-		GFF4122	0.79	+1.6
4,147,020	+		GFF4122	0.79	-0.2
4,147,031	+		GFF4122	0.79	-0.1
4,147,033	+		GFF4122	0.80	+0.1
4,147,033	+		GFF4122	0.80	-0.3
4,147,033	+		GFF4122	0.80	+0.3
4,147,035	-		GFF4122	0.80	+1.1
4,147,040	-		GFF4122	0.80	-0.5
4,147,040	-		GFF4122	0.80	+0.8
4,147,040	-		GFF4122	0.80	+0.3
4,147,040	-		GFF4122	0.80	-0.6
4,147,041	-		GFF4122	0.80	-0.8
4,147,057	+		GFF4122	0.81	+1.0
4,147,060	-		GFF4122	0.81	+0.4
4,147,070	-		GFF4122	0.81	+0.9
4,147,070	-		GFF4122	0.81	-1.5
4,147,070	-		GFF4122	0.81	+1.0
4,147,070	-		GFF4122	0.81	-0.7
4,147,070	-		GFF4122	0.81	-0.9
4,147,070	-		GFF4122	0.81	+0.5
4,147,075	-		GFF4122	0.82	-0.5
4,147,082	-		GFF4122	0.82	-0.0
4,147,102	+		GFF4122	0.83	+0.3
4,147,102	+		GFF4122	0.83	-0.4
4,147,102	+		GFF4122	0.83	+0.1
4,147,108	-		GFF4122	0.84	+0.3
4,147,110	-		GFF4122	0.84	-1.4
4,147,110	-		GFF4122	0.84	-1.0
4,147,110	-		GFF4122	0.84	+0.5
4,147,110	-		GFF4122	0.84	-0.7
4,147,115	-		GFF4122	0.84	+0.6
4,147,117	+		GFF4122	0.84	-0.9
4,147,117	+		GFF4122	0.84	-0.4
4,147,130	-		GFF4122	0.85	-1.0
4,147,135	-		GFF4122	0.85	+0.9
4,147,143	+		GFF4122	0.85	-1.3
4,147,146	-		GFF4122	0.86	-0.6
4,147,165	+		GFF4122	0.87	-2.5
4,147,205	-		GFF4122	0.89	-0.4
4,147,220	+		GFF4122	0.90	-0.1
4,147,220	+		GFF4122	0.90	-0.6
4,147,220	+		GFF4122	0.90	-1.8
4,147,228	-				-0.7
4,147,228	-				+0.8
4,147,228	-				-0.7
4,147,228	-				-0.2
4,147,241	+				-0.3
4,147,265	+				-0.5
4,147,279	+				+0.8
4,147,289	+				+0.3
4,147,289	+				+0.3
4,147,289	+				-0.3
4,147,289	+				-0.6
4,147,289	+				+0.4
4,147,289	+				+0.1
4,147,297	-				+0.1
4,147,297	-				+0.6
4,147,297	-				-0.5
4,147,297	-				+2.3
4,147,297	-				+0.4
4,147,297	-				-0.0
4,147,313	+				+0.7
4,147,313	+				-0.6
4,147,313	+				-1.3
4,147,319	+				+1.5
4,147,361	-				-2.0
4,147,386	+				-0.2
4,147,399	+				-0.6
4,147,401	+				-0.0
4,147,406	+				+1.7
4,147,408	+				+0.7
4,147,414	-				-0.5
4,147,416	-				-0.3
4,147,416	-				-0.5
4,147,425	-				+0.4
4,147,426	-				+0.1
4,147,426	-				-0.7
4,148,085	+				+1.5
4,148,089	-				-0.0
4,148,091	-				+0.1
4,148,093	-				-0.1
4,148,134	-				-0.3
4,148,172	+				-1.3
4,148,172	+				+1.2
4,148,172	+				-0.4
4,148,182	+				+1.4
4,148,239	+				-0.6
4,148,239	+				-0.9
4,148,239	+				+0.9
4,148,240	+				+1.4
4,148,246	-				-0.6
4,148,247	-				+0.2
4,148,247	-				+0.2
4,148,247	-				-0.3
4,148,247	-				+1.2
4,148,250	+				+1.6
4,148,250	+				+1.2
4,148,258	-				+0.6
4,148,258	-				-1.3
4,148,273	-				-1.3
4,148,292	-				+0.5
4,148,311	-		GFF4124	0.11	-1.4
4,148,322	-		GFF4124	0.12	-0.0
4,148,346	-		GFF4124	0.14	-0.3
4,148,357	-		GFF4124	0.15	+0.4
4,148,372	+		GFF4124	0.17	+0.1
4,148,374	+		GFF4124	0.17	-0.9
4,148,392	-		GFF4124	0.18	+0.8
4,148,399	+		GFF4124	0.19	-0.1
4,148,407	-		GFF4124	0.20	+0.2
4,148,407	-		GFF4124	0.20	-1.3
4,148,407	-		GFF4124	0.20	-0.1
4,148,434	+		GFF4124	0.22	-1.0
4,148,447	-		GFF4124	0.23	+0.5
4,148,449	+		GFF4124	0.23	-0.3
4,148,456	+		GFF4124	0.24	-1.7
4,148,470	+		GFF4124	0.25	-0.3
4,148,485	+		GFF4124	0.27	+0.5
4,148,485	+		GFF4124	0.27	-2.1
4,148,489	+		GFF4124	0.27	+1.4
4,148,489	+		GFF4124	0.27	-0.7
4,148,495	-		GFF4124	0.28	-1.9
4,148,497	-		GFF4124	0.28	+0.1
4,148,543	-		GFF4124	0.32	-0.7
4,148,565	+		GFF4124	0.34	-0.4
4,148,582	+		GFF4124	0.35	+0.1
4,148,584	+		GFF4124	0.36	-0.3
4,148,592	-		GFF4124	0.36	-1.4
4,148,602	+		GFF4124	0.37	-1.1
4,148,610	-		GFF4124	0.38	-1.5
4,148,610	-		GFF4124	0.38	-0.4
4,148,643	+		GFF4124	0.41	+0.2
4,148,647	-		GFF4124	0.41	+0.2
4,148,651	+		GFF4124	0.42	+1.6
4,148,651	+		GFF4124	0.42	+0.7
4,148,652	-		GFF4124	0.42	-0.9
4,148,652	-		GFF4124	0.42	+0.1
4,148,652	-		GFF4124	0.42	-0.4
4,148,679	+		GFF4124	0.44	-0.1
4,148,679	+		GFF4124	0.44	-1.3
4,148,682	-		GFF4124	0.44	-1.9
4,148,687	-		GFF4124	0.45	+0.5
4,148,688	-		GFF4124	0.45	+2.0
4,148,689	+		GFF4124	0.45	+0.3
4,148,692	+		GFF4124	0.45	-1.4
4,148,722	+		GFF4124	0.48	-0.3
4,148,724	-		GFF4124	0.48	+0.9
4,148,730	-		GFF4124	0.49	+0.2
4,148,730	-		GFF4124	0.49	+0.3
4,148,769	-		GFF4124	0.52	+0.4
4,148,771	+		GFF4124	0.52	+0.5
4,148,771	+		GFF4124	0.52	+0.3
4,148,771	+		GFF4124	0.52	+0.2
4,148,779	-		GFF4124	0.53	+1.0
4,148,779	-		GFF4124	0.53	+0.7
4,148,779	-		GFF4124	0.53	+0.3
4,148,779	-		GFF4124	0.53	+1.6
4,148,779	-		GFF4124	0.53	-0.4
4,148,798	+		GFF4124	0.55	-1.0
4,148,812	+		GFF4124	0.56	+1.5
4,148,812	+		GFF4124	0.56	+1.3
4,148,820	-		GFF4124	0.57	+0.6
4,148,829	+		GFF4124	0.58	+0.3
4,148,848	+		GFF4124	0.59	-1.5
4,148,863	+		GFF4124	0.61	-0.1
4,148,863	+		GFF4124	0.61	-0.1
4,148,868	+		GFF4124	0.61	-0.5
4,148,871	-		GFF4124	0.61	-0.8
4,148,876	+		GFF4124	0.62	-0.5
4,148,876	-		GFF4124	0.62	-0.3
4,148,876	-		GFF4124	0.62	+0.3
4,148,876	-		GFF4124	0.62	+0.8
4,148,895	+		GFF4124	0.64	+0.4
4,148,903	-		GFF4124	0.64	-0.3
4,148,903	-		GFF4124	0.64	-1.1
4,148,912	+		GFF4124	0.65	-0.3
4,148,941	+		GFF4124	0.68	-1.0
4,148,941	+		GFF4124	0.68	+0.6
4,148,941	+		GFF4124	0.68	+1.5
4,148,946	+		GFF4124	0.68	-2.3
4,148,946	+		GFF4124	0.68	+0.1
4,148,946	+		GFF4124	0.68	+1.7
4,148,946	+		GFF4124	0.68	-1.6
4,148,946	+		GFF4124	0.68	+0.3
4,148,948	+		GFF4124	0.68	-0.4
4,148,949	-		GFF4124	0.68	-0.2
4,148,954	+		GFF4124	0.69	+1.0
4,148,954	+		GFF4124	0.69	+0.7
4,148,954	-		GFF4124	0.69	+0.0
4,148,954	-		GFF4124	0.69	+0.1
4,149,027	+		GFF4124	0.75	-1.2
4,149,035	-		GFF4124	0.76	+0.4
4,149,055	-		GFF4124	0.78	+0.7
4,149,057	+		GFF4124	0.78	+0.3
4,149,057	+		GFF4124	0.78	-0.2
4,149,062	+		GFF4124	0.79	+0.3
4,149,070	-		GFF4124	0.79	-0.9
4,149,078	+		GFF4124	0.80	+1.1
4,149,083	+		GFF4124	0.80	+0.7
4,149,086	-		GFF4124	0.81	+0.7