Strain Fitness in Sphingobium sp. HT1-2 around GFF4022

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,044,540	-				-1.6
4,044,574	+				+1.6
4,044,606	-				+1.2
4,044,655	-		GFF4020	0.14	-1.0
4,044,670	+		GFF4020	0.22	-0.6
4,044,670	+		GFF4020	0.22	-1.9
4,044,693	-		GFF4020	0.34	+0.1
4,044,693	-		GFF4020	0.34	+0.4
4,044,733	-		GFF4020	0.56	-2.7
4,044,739	+		GFF4020	0.60	+0.2
4,044,761	+		GFF4020	0.72	+1.3
4,044,761	+		GFF4020	0.72	+0.5
4,044,769	-		GFF4020	0.76	-0.9
4,044,769	-		GFF4020	0.76	-1.0
4,044,797	-				-1.2
4,044,811	-				-0.4
4,044,815	+				+1.2
4,044,831	-				+0.7
4,044,833	-				+1.9
4,044,865	-				-1.8
4,044,868	+				-0.4
4,044,868	+				-1.6
4,044,876	-				-0.1
4,044,876	-				+0.3
4,044,894	+				-0.5
4,044,894	+				+0.8
4,044,902	-				-0.9
4,044,902	-				+0.2
4,044,916	-				-1.4
4,044,925	+				+0.5
4,044,935	+				+0.7
4,044,935	+				-1.3
4,044,936	+				-0.4
4,044,936	+				-0.3
4,044,944	-				-0.7
4,044,944	-				+0.5
4,044,946	+				-0.1
4,044,948	+				-0.7
4,044,953	+				+0.8
4,044,958	+				+1.1
4,044,958	+				+0.7
4,044,958	+				-2.8
4,044,958	+				-0.5
4,044,958	+				-1.3
4,044,958	+				-0.1
4,044,958	+				-0.7
4,044,958	+				-1.7
4,044,958	+				-0.0
4,044,958	+				+0.7
4,044,966	-				-1.5
4,044,966	-				-1.0
4,044,966	-				-1.6
4,044,966	-				+0.0
4,044,966	-				-0.2
4,044,966	-				+1.2
4,044,966	-				+0.8
4,044,966	-				+0.3
4,044,966	-				+0.0
4,044,966	-				-0.4
4,044,966	-				+0.4
4,044,971	+				+0.7
4,044,971	+				-0.4
4,044,971	+				-1.9
4,044,971	+				-0.6
4,044,971	+				+0.1
4,044,979	-				-1.2
4,044,989	-				-0.8
4,044,994	-				+0.1
4,045,026	+				-0.3
4,045,026	+				-0.8
4,045,044	+				+1.1
4,045,052	-				-0.6
4,045,055	+				-2.1
4,045,065	+				-0.1
4,045,073	-				+0.3
4,045,073	-				+0.1
4,045,086	+				-0.6
4,045,099	-				+0.5
4,045,181	-				+0.8
4,045,186	+				+0.7
4,045,186	+				+1.1
4,045,186	+				-3.0
4,045,186	+				-1.1
4,045,186	+				+0.1
4,045,186	+				+0.2
4,045,186	+				+0.8
4,045,186	+				+0.4
4,045,194	-				-0.8
4,045,194	-				-1.0
4,045,194	-				-0.4
4,045,194	-				-0.2
4,045,194	-				+0.8
4,045,194	-				+1.0
4,045,194	-				-1.3
4,045,194	-				-0.2
4,045,194	-				+0.6
4,045,194	-				+0.8
4,045,211	-		GFF4021	0.16	-0.7
4,045,225	+		GFF4021	0.23	+0.3
4,045,228	-		GFF4021	0.24	-0.1
4,045,233	-		GFF4021	0.26	+1.3
4,045,233	-		GFF4021	0.26	-0.8
4,045,235	+		GFF4021	0.27	+0.9
4,045,237	+		GFF4021	0.28	+0.6
4,045,243	-		GFF4021	0.31	-1.1
4,045,243	-		GFF4021	0.31	+0.1
4,045,248	+		GFF4021	0.33	+0.1
4,045,251	-		GFF4021	0.35	+0.1
4,045,266	+		GFF4021	0.42	+0.4
4,045,268	-		GFF4021	0.43	+0.2
4,045,319	-		GFF4021	0.66	+0.7
4,045,321	+		GFF4021	0.67	+0.6
4,045,363	-		GFF4021	0.87	-1.2
4,045,386	+				-0.4
4,045,388	+				-2.8
4,045,388	+				-0.1
4,045,394	-				+0.8
4,045,396	-				+0.2
4,045,403	-				+0.5
4,045,495	+				-0.4
4,045,495	+				-2.7
4,045,495	+				-2.5
4,046,183	+		GFF4023	0.14	+0.2
4,046,206	+		GFF4023	0.19	-0.3
4,046,206	+		GFF4023	0.19	-0.0
4,046,209	+		GFF4023	0.20	-0.5
4,046,209	-		GFF4023	0.20	-0.2
4,046,214	-		GFF4023	0.21	+0.3
4,046,214	-		GFF4023	0.21	-1.9
4,046,219	+		GFF4023	0.22	-0.2
4,046,219	+		GFF4023	0.22	-0.0
4,046,222	-		GFF4023	0.23	-0.1
4,046,227	-		GFF4023	0.24	-0.8
4,046,227	-		GFF4023	0.24	+0.8
4,046,227	-		GFF4023	0.24	+0.2
4,046,231	+		GFF4023	0.25	+0.3
4,046,231	+		GFF4023	0.25	-1.0
4,046,231	+		GFF4023	0.25	-0.4
4,046,231	+		GFF4023	0.25	-0.4
4,046,236	+		GFF4023	0.26	-0.1
4,046,239	-		GFF4023	0.27	+0.0
4,046,239	-		GFF4023	0.27	+0.2
4,046,239	-		GFF4023	0.27	-1.7
4,046,239	-		GFF4023	0.27	-0.4
4,046,239	-		GFF4023	0.27	+1.5
4,046,239	-		GFF4023	0.27	-0.1
4,046,244	-		GFF4023	0.28	+0.3
4,046,288	+		GFF4023	0.38	-1.8
4,046,288	+		GFF4023	0.38	-0.8
4,046,288	+		GFF4023	0.38	-0.6
4,046,296	-		GFF4023	0.40	+0.2
4,046,296	-		GFF4023	0.40	-0.5
4,046,296	-		GFF4023	0.40	-0.1
4,046,296	-		GFF4023	0.40	-3.0
4,046,297	+		GFF4023	0.40	+0.7
4,046,305	-		GFF4023	0.42	-0.3
4,046,305	-		GFF4023	0.42	-1.9
4,046,306	-		GFF4023	0.42	+1.3
4,046,332	+		GFF4023	0.48	+0.5
4,046,333	-		GFF4023	0.48	-0.8
4,046,341	+		GFF4023	0.50	+0.5
4,046,342	-		GFF4023	0.50	+0.3
4,046,387	-		GFF4023	0.61	-0.2
4,046,405	+		GFF4023	0.65	+1.3
4,046,406	-		GFF4023	0.65	-1.3
4,046,437	-		GFF4023	0.72	-1.0
4,046,470	-		GFF4023	0.80	-0.4
4,046,470	-		GFF4023	0.80	-0.0
4,046,485	+		GFF4023	0.84	-1.6
4,046,493	-		GFF4023	0.85	+0.7
4,046,516	+				-0.4
4,046,659	+				+0.5
4,046,659	+				+0.0
4,046,659	+				-1.7
4,046,659	+				-2.3
4,046,682	-				-1.6
4,046,688	-				-1.2
4,046,696	+				+0.1
4,046,696	+				+0.2
4,046,696	+				+1.4
4,046,696	+				-2.1
4,046,696	+				+0.9
4,046,696	+				+0.5
4,046,696	+				-0.4
4,046,696	+				-0.2
4,046,696	+				-0.5
4,046,696	+				-0.2
4,046,704	-				-0.9
4,046,704	-				+0.0
4,046,775	+		GFF4024	0.36	-0.6
4,046,775	+		GFF4024	0.36	-1.0
4,046,812	+		GFF4024	0.51	-0.5
4,046,833	-		GFF4024	0.59	-1.7
4,046,836	+		GFF4024	0.60	-0.8
4,046,864	-		GFF4024	0.71	-1.1
4,046,889	-		GFF4024	0.82	-1.4
4,046,889	-		GFF4024	0.82	+0.1
4,046,902	+		GFF4024	0.87	-0.6
4,046,910	+				-0.7
4,046,910	+				-0.7
4,046,941	+				-0.3
4,046,941	-				+0.6
4,046,946	+				+1.4
4,046,946	+				+1.0
4,046,946	+				-0.8
4,046,946	+				-0.4
4,046,946	+				-2.4
4,046,946	+				-1.7
4,046,946	+				+0.8
4,046,946	+				+0.8
4,046,949	-				-0.5
4,046,951	+				+0.7
4,046,954	-				-1.0
4,046,954	-				-1.3
4,046,954	-				-0.4
4,046,954	-				+0.9
4,046,954	-				-0.6
4,046,954	-				-1.0
4,046,954	-				+0.2
4,046,954	-				+0.1
4,046,954	-				-0.5
4,046,954	-				-0.5
4,046,954	-				-1.8
4,046,956	+				+1.3
4,046,956	+				-1.5
4,046,956	+				-1.3
4,046,956	+				-1.9
4,046,964	-				-1.0
4,046,974	-		GFF4025	0.11	-1.3
4,046,982	+		GFF4025	0.13	-0.7
4,046,985	-		GFF4025	0.14	-0.4
4,046,985	-		GFF4025	0.14	+1.3
4,046,985	-		GFF4025	0.14	+0.4
4,046,990	+		GFF4025	0.15	-0.3
4,046,990	-		GFF4025	0.15	-1.3
4,046,990	-		GFF4025	0.15	-1.3
4,046,990	-		GFF4025	0.15	+0.4
4,046,990	-		GFF4025	0.15	+0.3
4,046,990	-		GFF4025	0.15	-0.4
4,046,990	-		GFF4025	0.15	-0.5
4,046,990	-		GFF4025	0.15	-1.4
4,046,992	+		GFF4025	0.16	-0.4
4,046,992	+		GFF4025	0.16	+1.2
4,046,997	+		GFF4025	0.17	+0.2
4,046,998	-		GFF4025	0.17	-1.7
4,047,000	-		GFF4025	0.18	-0.7
4,047,000	-		GFF4025	0.18	-0.6
4,047,000	-		GFF4025	0.18	-2.3
4,047,000	-		GFF4025	0.18	-2.1
4,047,000	-		GFF4025	0.18	-0.2
4,047,000	-		GFF4025	0.18	+1.0
4,047,003	-		GFF4025	0.19	-1.4
4,047,003	-		GFF4025	0.19	+0.5
4,047,012	+		GFF4025	0.21	-0.8
4,047,012	+		GFF4025	0.21	+0.3
4,047,015	-		GFF4025	0.22	+1.9
4,047,017	+		GFF4025	0.22	+0.3
4,047,017	+		GFF4025	0.22	+0.4
4,047,017	+		GFF4025	0.22	-0.2
4,047,054	-		GFF4025	0.33	-0.8
4,047,075	+		GFF4025	0.38	-0.1
4,047,104	+		GFF4025	0.46	+0.8
4,047,112	-		GFF4025	0.48	+0.1
4,047,112	-		GFF4025	0.48	+1.1