Strain Fitness in Sphingobium sp. HT1-2 around GFF3912

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,949,709	-		GFF3910	0.66	+1.4
3,949,723	+		GFF3910	0.67	+0.1
3,949,728	+		GFF3910	0.68	-0.0
3,949,731	-		GFF3910	0.68	-1.4
3,949,731	-		GFF3910	0.68	-1.0
3,949,731	-		GFF3910	0.68	+0.8
3,949,751	+		GFF3910	0.70	-0.2
3,949,758	+		GFF3910	0.71	-0.2
3,949,759	-		GFF3910	0.71	-2.3
3,949,803	+		GFF3910	0.75	-0.0
3,949,820	+		GFF3910	0.77	-1.5
3,949,820	+		GFF3910	0.77	-2.4
3,949,828	-		GFF3910	0.78	+0.3
3,949,830	+		GFF3910	0.78	-0.9
3,949,833	-		GFF3910	0.79	-1.0
3,949,835	-		GFF3910	0.79	-1.4
3,949,858	+		GFF3910	0.81	-0.5
3,949,879	+		GFF3910	0.83	-0.1
3,949,885	+		GFF3910	0.84	-0.2
3,949,886	+		GFF3910	0.84	-0.2
3,949,886	+		GFF3910	0.84	+0.0
3,949,886	+		GFF3910	0.84	+0.1
3,949,886	+		GFF3910	0.84	+0.9
3,949,886	+		GFF3910	0.84	+0.3
3,949,886	+		GFF3910	0.84	+1.2
3,949,886	+		GFF3910	0.84	+0.5
3,949,886	+		GFF3910	0.84	+1.1
3,949,894	-		GFF3910	0.85	-1.5
3,949,894	-		GFF3910	0.85	+1.2
3,949,894	-		GFF3910	0.85	-1.0
3,949,894	-		GFF3910	0.85	+0.2
3,949,894	-		GFF3910	0.85	-1.2
3,949,894	-		GFF3910	0.85	-2.1
3,949,894	-		GFF3910	0.85	-0.3
3,949,894	-		GFF3910	0.85	+0.6
3,949,894	-		GFF3910	0.85	+1.0
3,949,905	+		GFF3910	0.86	+0.6
3,949,907	+		GFF3910	0.86	-1.0
3,949,913	-		GFF3910	0.87	-0.7
3,949,913	-		GFF3910	0.87	-1.2
3,949,915	+		GFF3910	0.87	+0.3
3,949,915	+		GFF3910	0.87	-2.2
3,949,915	+		GFF3910	0.87	+0.4
3,949,915	+		GFF3910	0.87	-1.8
3,949,923	-		GFF3910	0.88	-0.4
3,949,923	-		GFF3910	0.88	-0.2
3,949,934	+		GFF3910	0.89	+0.5
3,949,942	-		GFF3910	0.90	-0.7
3,949,942	-		GFF3910	0.90	+0.8
3,949,948	+				-0.0
3,949,957	-				-2.1
3,949,977	+				-1.4
3,950,021	+				+1.1
3,950,021	+				-1.2
3,950,021	+				+0.4
3,950,021	+				+1.0
3,950,029	-				-0.8
3,950,029	-				+0.6
3,950,029	-				+0.6
3,950,029	-				-2.6
3,950,067	+				-0.3
3,950,083	-				-2.6
3,950,087	+				-0.1
3,950,095	-				-0.6
3,950,095	-				-0.6
3,950,097	-		GFF3911	0.10	+0.4
3,950,114	+		GFF3911	0.13	+0.6
3,950,122	-		GFF3911	0.14	-1.2
3,950,138	+		GFF3911	0.17	+0.5
3,950,138	+		GFF3911	0.17	-0.0
3,950,141	-		GFF3911	0.17	-0.8
3,950,141	-		GFF3911	0.17	+0.3
3,950,141	-		GFF3911	0.17	+0.0
3,950,146	-		GFF3911	0.18	+0.0
3,950,146	-		GFF3911	0.18	-1.7
3,950,146	-		GFF3911	0.18	+0.3
3,950,146	-		GFF3911	0.18	-1.9
3,950,185	+		GFF3911	0.25	+1.0
3,950,185	+		GFF3911	0.25	-0.0
3,950,193	-		GFF3911	0.26	+0.1
3,950,206	+		GFF3911	0.28	+0.3
3,950,206	+		GFF3911	0.28	+1.6
3,950,236	-		GFF3911	0.34	+0.5
3,950,275	+		GFF3911	0.40	-0.7
3,950,275	+		GFF3911	0.40	+0.5
3,950,316	-		GFF3911	0.47	+1.2
3,950,352	+		GFF3911	0.53	+0.7
3,950,369	-		GFF3911	0.56	-0.3
3,950,375	+		GFF3911	0.57	+0.1
3,950,385	+		GFF3911	0.59	+0.9
3,950,385	+		GFF3911	0.59	-1.2
3,950,385	+		GFF3911	0.59	+0.7
3,950,393	-		GFF3911	0.60	-1.6
3,950,413	+		GFF3911	0.63	+0.4
3,950,442	+		GFF3911	0.68	-0.6
3,950,450	-		GFF3911	0.70	-0.2
3,950,450	-		GFF3911	0.70	+0.1
3,950,465	+		GFF3911	0.72	+0.2
3,950,478	-		GFF3911	0.74	-0.4
3,950,485	+		GFF3911	0.76	+0.3
3,950,508	+		GFF3911	0.80	-2.8
3,950,525	+		GFF3911	0.82	-1.5
3,950,525	+		GFF3911	0.82	+0.2
3,950,525	+		GFF3911	0.82	-0.7
3,950,525	+		GFF3911	0.82	+1.8
3,950,535	+		GFF3911	0.84	-0.0
3,950,535	+		GFF3911	0.84	+1.0
3,950,535	+		GFF3911	0.84	-0.8
3,950,582	+				+1.1
3,950,602	+				-0.2
3,950,625	+				+0.1
3,950,635	+				-0.9
3,950,643	-				-0.5
3,950,643	-				-0.7
3,950,643	-				+0.2
3,950,658	-				+0.5
3,950,688	+				+0.2
3,950,693	+				-0.2
3,950,726	+				-0.7
3,950,726	+				-0.4
3,950,730	+				-0.7
3,950,734	-		GFF3912	0.11	+0.3
3,950,734	-		GFF3912	0.11	+1.6
3,950,734	-		GFF3912	0.11	-1.8
3,950,734	-		GFF3912	0.11	+0.1
3,950,761	-		GFF3912	0.22	-0.6
3,950,765	-		GFF3912	0.24	-0.5
3,950,768	-		GFF3912	0.25	-1.2
3,950,775	+		GFF3912	0.28	-2.0
3,950,775	-		GFF3912	0.28	-2.2
3,950,783	-		GFF3912	0.31	+0.7
3,950,785	+		GFF3912	0.32	+0.2
3,950,785	-		GFF3912	0.32	-0.2
3,950,791	-		GFF3912	0.34	-1.1
3,950,804	+		GFF3912	0.39	-1.4
3,950,812	-		GFF3912	0.43	-1.4
3,950,812	-		GFF3912	0.43	-0.4
3,950,812	-		GFF3912	0.43	-0.2
3,950,814	+		GFF3912	0.43	-2.9
3,950,814	+		GFF3912	0.43	-0.5
3,950,814	+		GFF3912	0.43	+1.2
3,950,814	+		GFF3912	0.43	+0.6
3,950,814	+		GFF3912	0.43	-1.0
3,950,814	+		GFF3912	0.43	+0.0
3,950,814	+		GFF3912	0.43	+0.2
3,950,814	+		GFF3912	0.43	+1.4
3,950,814	+		GFF3912	0.43	-3.1
3,950,822	-		GFF3912	0.47	+0.6
3,950,822	-		GFF3912	0.47	-1.3
3,950,822	-		GFF3912	0.47	-0.4
3,950,822	-		GFF3912	0.47	-0.8
3,950,822	-		GFF3912	0.47	-0.5
3,950,822	-		GFF3912	0.47	-0.2
3,950,822	-		GFF3912	0.47	-2.0
3,950,822	-		GFF3912	0.47	-1.0
3,950,822	-		GFF3912	0.47	-1.6
3,950,841	-		GFF3912	0.54	-0.4
3,950,866	-		GFF3912	0.65	+0.1
3,950,875	+		GFF3912	0.68	-0.1
3,950,875	+		GFF3912	0.68	-0.0
3,950,883	-		GFF3912	0.72	-1.2
3,950,883	-		GFF3912	0.72	-0.2
3,950,883	-		GFF3912	0.72	+1.0
3,950,883	-		GFF3912	0.72	-0.0
3,950,883	-		GFF3912	0.72	-2.2
3,950,883	-		GFF3912	0.72	-0.2
3,950,883	-		GFF3912	0.72	-0.9
3,950,884	+		GFF3912	0.72	-2.2
3,950,888	+		GFF3912	0.74	+0.3
3,950,898	+		GFF3912	0.78	+0.0
3,950,906	-		GFF3912	0.81	-1.9
3,950,906	-		GFF3912	0.81	+1.0
3,950,911	-		GFF3912	0.83	-0.8
3,950,970	+				-0.4
3,950,970	+				-0.2
3,950,970	+				-1.2
3,950,970	+				+1.0
3,950,970	+				+0.5
3,950,970	+				+0.9
3,950,970	+				+0.9
3,950,970	+				-0.4
3,950,970	+				-0.9
3,950,970	+				+1.1
3,950,970	+				+0.2
3,950,970	+				-0.6
3,950,970	+				-0.8
3,950,978	-		GFF3913	0.14	-0.2
3,950,978	-		GFF3913	0.14	-0.8
3,950,978	-		GFF3913	0.14	+0.3
3,950,978	-		GFF3913	0.14	-0.1
3,950,988	-		GFF3913	0.19	-0.2
3,951,012	+		GFF3913	0.33	-1.1
3,951,022	+		GFF3913	0.38	-1.3
3,951,031	-		GFF3913	0.44	-1.0
3,951,099	+		GFF3913	0.82	-1.7
3,951,107	-		GFF3913	0.86	-0.7
3,951,124	-				-1.2
3,951,151	+				-1.0
3,951,151	+				-2.4
3,951,151	+				-0.2
3,951,151	+				+1.0
3,951,151	+				+1.5
3,951,151	+				-0.1
3,951,151	+				-0.4
3,951,151	+				+0.0
3,951,159	-				-1.7
3,951,159	-				-1.2
3,951,159	-				-0.5
3,951,159	-				-0.4
3,951,159	-				+0.6
3,951,159	-				-0.3
3,951,159	-				-0.6
3,951,159	-				-0.7
3,951,159	-				+0.9
3,951,177	+				+0.1
3,951,182	+				+0.1
3,951,182	+				-0.5
3,951,187	+				+1.0
3,951,190	-				-0.4
3,951,236	+				-0.7
3,951,244	-				-1.8
3,951,254	-				-0.7
3,951,272	-		GFF3914	0.11	-0.4
3,951,291	+		GFF3914	0.12	-1.6
3,951,303	+		GFF3914	0.13	-0.5
3,951,303	+		GFF3914	0.13	-0.0
3,951,303	+		GFF3914	0.13	+0.2
3,951,303	+		GFF3914	0.13	-1.0
3,951,311	-		GFF3914	0.14	-0.7
3,951,311	-		GFF3914	0.14	-0.4
3,951,326	-		GFF3914	0.15	+0.6
3,951,340	+		GFF3914	0.16	+0.1
3,951,353	+		GFF3914	0.17	+1.3
3,951,402	+		GFF3914	0.20	-0.2
3,951,461	+		GFF3914	0.25	-1.8
3,951,473	-		GFF3914	0.26	-0.5
3,951,475	+		GFF3914	0.26	-0.0
3,951,494	+		GFF3914	0.27	-0.9
3,951,494	+		GFF3914	0.27	-1.4
3,951,499	+		GFF3914	0.28	-1.3
3,951,502	-		GFF3914	0.28	-0.4
3,951,502	-		GFF3914	0.28	-0.3
3,951,502	-		GFF3914	0.28	-1.1
3,951,502	-		GFF3914	0.28	-1.1
3,951,526	+		GFF3914	0.30	-0.6
3,951,532	+		GFF3914	0.30	+0.4
3,951,537	+		GFF3914	0.31	-0.3
3,951,539	-		GFF3914	0.31	+0.5
3,951,539	-		GFF3914	0.31	-0.2
3,951,540	-		GFF3914	0.31	-1.8
3,951,542	+		GFF3914	0.31	+0.4
3,951,542	+		GFF3914	0.31	-1.1
3,951,542	+		GFF3914	0.31	-0.0
3,951,545	-		GFF3914	0.31	-0.4
3,951,550	-		GFF3914	0.32	+0.7
3,951,556	+		GFF3914	0.32	-0.7
3,951,556	+		GFF3914	0.32	-1.6
3,951,556	+		GFF3914	0.32	-0.0
3,951,561	+		GFF3914	0.32	-0.3
3,951,561	+		GFF3914	0.32	+0.2
3,951,561	+		GFF3914	0.32	+1.4
3,951,564	-		GFF3914	0.33	-0.8
3,951,568	-		GFF3914	0.33	+0.0
3,951,569	-		GFF3914	0.33	+0.5
3,951,623	-		GFF3914	0.37	-0.3
3,951,623	-		GFF3914	0.37	+1.6
3,951,673	-		GFF3914	0.41	-1.2
3,951,717	-		GFF3914	0.44	-1.5
3,951,769	-		GFF3914	0.48	+0.4
3,951,773	-		GFF3914	0.48	-2.0
3,951,788	-		GFF3914	0.50	-0.8
3,951,803	+		GFF3914	0.51	-2.1
3,951,817	-		GFF3914	0.52	+0.2
3,951,846	-		GFF3914	0.54	+1.2
3,951,853	+		GFF3914	0.54	+0.7
3,951,853	+		GFF3914	0.54	-1.0
3,951,853	-		GFF3914	0.54	+0.8
3,951,861	-		GFF3914	0.55	+0.3
3,951,861	-		GFF3914	0.55	+0.0
3,951,861	-		GFF3914	0.55	+0.8
3,951,863	+		GFF3914	0.55	-1.0
3,951,871	-		GFF3914	0.56	+0.8
3,951,871	-		GFF3914	0.56	-0.6
3,951,871	-		GFF3914	0.56	+1.0
3,951,874	-		GFF3914	0.56	+0.1
3,951,926	-		GFF3914	0.60	-0.6