Strain Fitness in Sphingobium sp. HT1-2 around GFF3880

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,921,176	-		GFF3879	0.82	+0.0
3,921,176	-		GFF3879	0.82	+1.3
3,921,176	-		GFF3879	0.82	+0.6
3,921,176	-		GFF3879	0.82	-0.8
3,921,176	-		GFF3879	0.82	-1.0
3,921,176	-		GFF3879	0.82	-1.3
3,921,181	+		GFF3879	0.82	+0.9
3,921,181	+		GFF3879	0.82	-0.4
3,921,181	-		GFF3879	0.82	+1.1
3,921,236	+		GFF3879	0.84	+0.9
3,921,236	+		GFF3879	0.84	+1.0
3,921,236	+		GFF3879	0.84	+0.5
3,921,236	+		GFF3879	0.84	-1.4
3,921,236	+		GFF3879	0.84	-0.9
3,921,236	+		GFF3879	0.84	-0.2
3,921,236	+		GFF3879	0.84	-1.9
3,921,244	-		GFF3879	0.84	+0.8
3,921,244	-		GFF3879	0.84	+1.4
3,921,244	-		GFF3879	0.84	+1.6
3,921,256	+		GFF3879	0.85	-0.5
3,921,256	+		GFF3879	0.85	+0.9
3,921,259	-		GFF3879	0.85	-1.3
3,921,261	+		GFF3879	0.85	-0.7
3,921,264	-		GFF3879	0.85	+1.2
3,921,264	-		GFF3879	0.85	+0.4
3,921,264	-		GFF3879	0.85	-0.2
3,921,264	-		GFF3879	0.85	-1.7
3,921,264	-		GFF3879	0.85	+1.2
3,921,264	-		GFF3879	0.85	-0.4
3,921,264	-		GFF3879	0.85	+0.2
3,921,277	-		GFF3879	0.85	+0.3
3,921,278	-		GFF3879	0.85	+0.0
3,921,278	-		GFF3879	0.85	+1.4
3,921,299	+		GFF3879	0.86	+0.3
3,921,309	+		GFF3879	0.86	-0.5
3,921,309	+		GFF3879	0.86	-1.4
3,921,309	+		GFF3879	0.86	+0.7
3,921,309	+		GFF3879	0.86	-1.0
3,921,317	+		GFF3879	0.87	-0.6
3,921,317	+		GFF3879	0.87	+0.1
3,921,317	+		GFF3879	0.87	+0.2
3,921,317	-		GFF3879	0.87	-0.1
3,921,317	-		GFF3879	0.87	+0.7
3,921,317	-		GFF3879	0.87	+0.2
3,921,317	-		GFF3879	0.87	+1.1
3,921,317	-		GFF3879	0.87	+0.2
3,921,325	-		GFF3879	0.87	-0.8
3,921,340	+		GFF3879	0.88	-2.5
3,921,342	+		GFF3879	0.88	+0.3
3,921,342	+		GFF3879	0.88	-1.5
3,921,343	-		GFF3879	0.88	+0.2
3,921,345	-		GFF3879	0.88	-0.4
3,921,347	+		GFF3879	0.88	+0.5
3,921,347	+		GFF3879	0.88	+0.7
3,921,350	-		GFF3879	0.88	-0.4
3,921,353	-		GFF3879	0.88	-0.3
3,921,376	+		GFF3879	0.89	-0.4
3,921,404	+		GFF3879	0.90	-1.9
3,921,404	+		GFF3879	0.90	-2.6
3,921,409	+				-2.6
3,921,449	+				+0.3
3,921,467	+				-0.8
3,921,467	-				-1.9
3,921,473	+				+0.1
3,921,473	+				+0.5
3,921,499	+				+0.6
3,921,511	+				-0.9
3,921,511	+				-0.6
3,921,512	-				+0.1
3,921,516	+				-0.7
3,921,516	+				-0.4
3,921,516	+				+0.6
3,921,516	+				-0.9
3,921,519	-				-1.2
3,921,519	-				-0.3
3,921,524	-				-0.7
3,921,538	-				-2.1
3,921,540	+				-0.1
3,921,540	-				+1.2
3,921,548	-				-0.8
3,921,549	-				-0.4
3,921,550	-				-0.4
3,921,550	-				-0.8
3,921,550	-				-1.7
3,921,550	-				-0.6
3,921,598	-				+0.0
3,921,630	-				+0.3
3,921,632	+				+1.0
3,921,640	-				-1.4
3,921,680	-				-0.2
3,921,680	-				-0.6
3,921,688	+				-1.1
3,921,688	+				-2.9
3,921,688	+				+0.2
3,921,690	+				+0.1
3,921,693	+				-2.9
3,921,693	+				-0.9
3,921,696	-				-0.1
3,921,696	-				-1.2
3,921,699	+				-1.5
3,921,699	+				+1.0
3,921,707	-				-0.7
3,921,707	-				+1.2
3,921,848	+				-0.3
3,921,848	+				+0.3
3,921,856	-				-0.7
3,921,870	-				-0.1
3,921,870	-				-1.9
3,921,878	+				+0.8
3,921,882	+				+0.7
3,921,890	-				-2.6
3,921,975	+				+0.3
3,921,983	-				-1.0
3,921,984	-				+0.5
3,921,993	+				+0.6
3,922,091	-				+0.2
3,922,093	+				-0.6
3,922,101	+				-2.2
3,922,101	-				-0.4
3,922,101	-				-1.3
3,922,108	-				+0.2
3,922,127	+				+1.6
3,922,137	+				+1.5
3,922,137	+				-0.1
3,922,143	-				+0.2
3,922,158	+				-1.5
3,922,170	+				+0.5
3,922,170	+				+0.3
3,922,178	-				-0.6
3,922,183	-				+0.2
3,922,185	+				-2.2
3,922,185	+				-1.5
3,922,193	-				+1.0
3,922,221	-				-0.6
3,922,224	+				+1.1
3,922,232	-				-1.4
3,922,265	-		GFF3880	0.10	-1.4
3,922,283	+		GFF3880	0.12	+0.5
3,922,288	+		GFF3880	0.13	+0.2
3,922,288	+		GFF3880	0.13	+0.8
3,922,288	+		GFF3880	0.13	-0.4
3,922,288	+		GFF3880	0.13	-1.5
3,922,288	+		GFF3880	0.13	-0.0
3,922,288	+		GFF3880	0.13	+2.1
3,922,288	+		GFF3880	0.13	+0.8
3,922,288	+		GFF3880	0.13	+0.1
3,922,288	+		GFF3880	0.13	-1.7
3,922,288	+		GFF3880	0.13	-1.3
3,922,288	+		GFF3880	0.13	-0.4
3,922,288	+		GFF3880	0.13	+1.2
3,922,288	+		GFF3880	0.13	-0.2
3,922,288	+		GFF3880	0.13	+0.9
3,922,288	+		GFF3880	0.13	+0.5
3,922,288	+		GFF3880	0.13	-0.4
3,922,296	-		GFF3880	0.14	-2.2
3,922,296	-		GFF3880	0.14	+0.4
3,922,296	-		GFF3880	0.14	-1.7
3,922,296	-		GFF3880	0.14	+0.1
3,922,296	-		GFF3880	0.14	+1.1
3,922,296	-		GFF3880	0.14	+1.5
3,922,296	-		GFF3880	0.14	+0.7
3,922,296	-		GFF3880	0.14	-0.2
3,922,296	-		GFF3880	0.14	-1.2
3,922,296	-		GFF3880	0.14	-0.8
3,922,296	-		GFF3880	0.14	-1.5
3,922,296	-		GFF3880	0.14	+0.4
3,922,296	-		GFF3880	0.14	+0.3
3,922,296	-		GFF3880	0.14	+0.6
3,922,296	-		GFF3880	0.14	-2.3
3,922,296	-		GFF3880	0.14	+0.3
3,922,296	-		GFF3880	0.14	-0.9
3,922,296	-		GFF3880	0.14	-1.2
3,922,297	+		GFF3880	0.14	-0.5
3,922,305	-		GFF3880	0.15	+0.2
3,922,306	-		GFF3880	0.15	-1.6
3,922,315	-		GFF3880	0.16	-0.1
3,922,316	+		GFF3880	0.16	-2.6
3,922,316	+		GFF3880	0.16	+1.0
3,922,316	+		GFF3880	0.16	+0.8
3,922,316	+		GFF3880	0.16	-2.2
3,922,316	+		GFF3880	0.16	-0.2
3,922,316	+		GFF3880	0.16	-0.8
3,922,322	-		GFF3880	0.17	+1.3
3,922,324	-		GFF3880	0.17	+0.7
3,922,324	-		GFF3880	0.17	-1.0
3,922,324	-		GFF3880	0.17	-1.2
3,922,324	-		GFF3880	0.17	-0.8
3,922,326	+		GFF3880	0.17	+1.4
3,922,337	-		GFF3880	0.19	-1.7
3,922,361	-		GFF3880	0.21	-0.8
3,922,374	+		GFF3880	0.23	+1.2
3,922,389	+		GFF3880	0.25	+1.5
3,922,389	+		GFF3880	0.25	-1.7
3,922,389	+		GFF3880	0.25	+0.2
3,922,392	-		GFF3880	0.25	+0.5
3,922,392	-		GFF3880	0.25	+0.2
3,922,392	-		GFF3880	0.25	-0.7
3,922,392	-		GFF3880	0.25	-0.8
3,922,392	-		GFF3880	0.25	+0.1
3,922,392	-		GFF3880	0.25	-0.0
3,922,392	-		GFF3880	0.25	+0.6
3,922,395	+		GFF3880	0.25	-2.5
3,922,397	-		GFF3880	0.26	+1.8
3,922,404	+		GFF3880	0.26	-0.4
3,922,412	-		GFF3880	0.27	+1.2
3,922,412	-		GFF3880	0.27	+0.3
3,922,419	+		GFF3880	0.28	-0.8
3,922,419	+		GFF3880	0.28	-1.6
3,922,419	+		GFF3880	0.28	-1.4
3,922,421	+		GFF3880	0.28	+0.3
3,922,427	-		GFF3880	0.29	+0.9
3,922,427	-		GFF3880	0.29	-2.0
3,922,429	-		GFF3880	0.29	-0.1
3,922,431	+		GFF3880	0.29	-2.1
3,922,445	+		GFF3880	0.31	-0.1
3,922,445	-		GFF3880	0.31	-0.2
3,922,450	-		GFF3880	0.32	+0.8
3,922,455	+		GFF3880	0.32	+0.4
3,922,455	+		GFF3880	0.32	+1.2
3,922,462	+		GFF3880	0.33	-0.5
3,922,462	+		GFF3880	0.33	+0.5
3,922,462	+		GFF3880	0.33	+0.2
3,922,462	+		GFF3880	0.33	-1.4
3,922,462	+		GFF3880	0.33	-1.6
3,922,462	+		GFF3880	0.33	+0.7
3,922,463	-		GFF3880	0.33	+0.7
3,922,463	-		GFF3880	0.33	-0.2
3,922,463	-		GFF3880	0.33	+1.5
3,922,467	+		GFF3880	0.34	-0.9
3,922,470	-		GFF3880	0.34	+0.2
3,922,470	-		GFF3880	0.34	+0.0
3,922,470	-		GFF3880	0.34	-0.9
3,922,470	-		GFF3880	0.34	-0.4
3,922,475	-		GFF3880	0.34	+1.2
3,922,475	-		GFF3880	0.34	-1.4
3,922,475	-		GFF3880	0.34	-0.1
3,922,480	+		GFF3880	0.35	+0.6
3,922,520	-		GFF3880	0.40	-1.8
3,922,521	+		GFF3880	0.40	-0.5
3,922,531	+		GFF3880	0.41	-1.5
3,922,560	+		GFF3880	0.44	-1.6
3,922,567	-		GFF3880	0.45	+0.8
3,922,568	-		GFF3880	0.45	-1.4
3,922,611	+		GFF3880	0.50	-0.6
3,922,612	+		GFF3880	0.50	-0.0
3,922,620	-		GFF3880	0.51	+0.7
3,922,631	+		GFF3880	0.52	-0.1
3,922,639	-		GFF3880	0.53	-0.3
3,922,639	-		GFF3880	0.53	-1.6
3,922,639	-		GFF3880	0.53	-0.6
3,922,639	-		GFF3880	0.53	+0.2
3,922,654	-		GFF3880	0.55	-0.4
3,922,656	+		GFF3880	0.55	-1.3
3,922,656	+		GFF3880	0.55	-0.8
3,922,656	+		GFF3880	0.55	-0.7
3,922,656	+		GFF3880	0.55	+0.2
3,922,656	+		GFF3880	0.55	-0.2
3,922,656	+		GFF3880	0.55	+0.0
3,922,656	+		GFF3880	0.55	-0.3
3,922,656	+		GFF3880	0.55	-0.6
3,922,656	-		GFF3880	0.55	+1.1
3,922,656	-		GFF3880	0.55	-0.2
3,922,664	-		GFF3880	0.56	-1.8
3,922,664	-		GFF3880	0.56	-1.2
3,922,664	-		GFF3880	0.56	-0.2
3,922,664	-		GFF3880	0.56	-2.6
3,922,664	-		GFF3880	0.56	-0.2
3,922,664	-		GFF3880	0.56	-0.5
3,922,664	-		GFF3880	0.56	+0.1
3,922,702	-		GFF3880	0.60	-1.1
3,922,727	-		GFF3880	0.63	-0.4
3,922,732	+		GFF3880	0.64	+1.2
3,922,732	+		GFF3880	0.64	+1.5
3,922,748	-		GFF3880	0.66	-1.2
3,922,758	+		GFF3880	0.67	+0.2
3,922,761	-		GFF3880	0.67	-0.5
3,922,783	-		GFF3880	0.70	-0.9
3,922,792	+		GFF3880	0.71	-0.7
3,922,793	-		GFF3880	0.71	+0.8
3,922,798	-		GFF3880	0.71	+0.2
3,922,800	-		GFF3880	0.72	-0.7
3,922,827	+		GFF3880	0.75	-2.4
3,922,827	+		GFF3880	0.75	-0.2
3,922,827	+		GFF3880	0.75	-0.3
3,922,835	-		GFF3880	0.76	+0.2
3,922,835	-		GFF3880	0.76	+0.4
3,922,835	-		GFF3880	0.76	-0.8
3,922,837	-		GFF3880	0.76	-0.2
3,922,837	-		GFF3880	0.76	-0.8
3,922,837	-		GFF3880	0.76	-1.4
3,922,837	-		GFF3880	0.76	-1.2
3,922,839	+		GFF3880	0.76	-0.2
3,922,839	+		GFF3880	0.76	-0.5
3,922,839	+		GFF3880	0.76	+1.2
3,922,839	+		GFF3880	0.76	+1.6
3,922,839	+		GFF3880	0.76	-0.1
3,922,839	+		GFF3880	0.76	-0.2
3,922,839	+		GFF3880	0.76	+0.8
3,922,839	+		GFF3880	0.76	-0.0
3,922,839	+		GFF3880	0.76	-1.1
3,922,839	+		GFF3880	0.76	-0.3
3,922,839	+		GFF3880	0.76	+0.3
3,922,839	+		GFF3880	0.76	-0.6
3,922,839	+		GFF3880	0.76	-0.0
3,922,839	+		GFF3880	0.76	+0.9
3,922,839	+		GFF3880	0.76	+0.0
3,922,839	+		GFF3880	0.76	+0.3
3,922,839	+		GFF3880	0.76	-1.1
3,922,839	+		GFF3880	0.76	-0.1
3,922,839	+		GFF3880	0.76	-1.3
3,922,839	+		GFF3880	0.76	-0.8
3,922,839	+		GFF3880	0.76	-1.0
3,922,839	+		GFF3880	0.76	+0.4
3,922,839	+		GFF3880	0.76	-1.2
3,922,839	+		GFF3880	0.76	-1.9
3,922,839	+		GFF3880	0.76	-0.6
3,922,839	+		GFF3880	0.76	+0.3
3,922,839	+		GFF3880	0.76	-1.4
3,922,847	-		GFF3880	0.77	+1.0
3,922,847	-		GFF3880	0.77	-0.3
3,922,847	-		GFF3880	0.77	-2.0
3,922,847	-		GFF3880	0.77	-0.6
3,922,847	-		GFF3880	0.77	+0.2
3,922,847	-		GFF3880	0.77	-1.1
3,922,847	-		GFF3880	0.77	+1.0
3,922,847	-		GFF3880	0.77	+0.4
3,922,847	-		GFF3880	0.77	+1.1
3,922,847	-		GFF3880	0.77	+0.5
3,922,847	-		GFF3880	0.77	-0.9
3,922,847	-		GFF3880	0.77	+0.4
3,922,847	-		GFF3880	0.77	-1.3
3,922,847	-		GFF3880	0.77	-1.1
3,922,847	-		GFF3880	0.77	-0.9
3,922,847	-		GFF3880	0.77	-0.0
3,922,847	-		GFF3880	0.77	+0.5
3,922,847	-		GFF3880	0.77	-0.4
3,922,847	-		GFF3880	0.77	-0.2
3,922,847	-		GFF3880	0.77	-0.2
3,922,847	-		GFF3880	0.77	+0.4
3,922,847	-		GFF3880	0.77	+0.9
3,922,847	-		GFF3880	0.77	-0.4
3,922,847	-		GFF3880	0.77	-2.3
3,922,847	-		GFF3880	0.77	-1.3
3,922,847	-		GFF3880	0.77	-0.9
3,922,847	-		GFF3880	0.77	-0.0
3,922,847	-		GFF3880	0.77	-0.7
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