Strain Fitness in Sphingobium sp. HT1-2 around GFF3865

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,907,131	+				+1.0
3,907,133	+				-0.6
3,907,133	+				-1.0
3,907,139	-				-1.0
3,907,139	-				+0.2
3,907,158	+				-0.7
3,907,158	+				-0.5
3,907,169	-				-2.2
3,907,175	+				-2.0
3,907,183	-				+0.4
3,907,188	-				+1.0
3,907,190	+				+0.5
3,907,190	+				-1.4
3,907,191	+				+1.2
3,907,199	-				+0.1
3,907,199	-				-0.6
3,907,201	+				-0.2
3,907,201	+				-0.5
3,907,201	+				+1.7
3,907,201	+				-0.8
3,907,201	+				+0.1
3,907,209	-				-0.6
3,907,209	-				-0.1
3,907,209	-				+0.0
3,907,214	-		GFF3864	0.10	-1.4
3,907,214	-		GFF3864	0.10	-0.5
3,907,217	+		GFF3864	0.11	+0.4
3,907,218	-		GFF3864	0.11	-0.8
3,907,235	+		GFF3864	0.13	+0.8
3,907,239	+		GFF3864	0.13	+0.3
3,907,256	+		GFF3864	0.16	+1.1
3,907,264	-		GFF3864	0.17	-1.2
3,907,264	-		GFF3864	0.17	-0.4
3,907,334	-		GFF3864	0.26	-1.0
3,907,345	+		GFF3864	0.27	+0.4
3,907,353	-		GFF3864	0.28	+0.5
3,907,360	+		GFF3864	0.29	-2.2
3,907,360	+		GFF3864	0.29	+1.5
3,907,391	+		GFF3864	0.33	-0.1
3,907,397	-		GFF3864	0.34	-1.2
3,907,408	+		GFF3864	0.36	-1.9
3,907,409	+		GFF3864	0.36	-0.8
3,907,409	+		GFF3864	0.36	+0.4
3,907,412	-		GFF3864	0.36	+0.1
3,907,412	-		GFF3864	0.36	+1.2
3,907,412	-		GFF3864	0.36	-0.0
3,907,412	-		GFF3864	0.36	-0.7
3,907,417	-		GFF3864	0.37	-1.8
3,907,417	-		GFF3864	0.37	-1.2
3,907,417	-		GFF3864	0.37	+1.7
3,907,426	-		GFF3864	0.38	-0.6
3,907,453	-		GFF3864	0.42	-0.6
3,907,455	+		GFF3864	0.42	-1.5
3,907,460	+		GFF3864	0.43	-0.6
3,907,466	+		GFF3864	0.43	-0.2
3,907,466	+		GFF3864	0.43	-0.6
3,907,466	+		GFF3864	0.43	-2.2
3,907,466	+		GFF3864	0.43	-1.0
3,907,469	-		GFF3864	0.44	+0.5
3,907,471	+		GFF3864	0.44	-0.6
3,907,474	-		GFF3864	0.44	-1.5
3,907,474	-		GFF3864	0.44	+1.2
3,907,474	-		GFF3864	0.44	-0.7
3,907,474	-		GFF3864	0.44	-0.5
3,907,474	-		GFF3864	0.44	-0.5
3,907,476	+		GFF3864	0.45	-0.4
3,907,476	+		GFF3864	0.45	+0.4
3,907,479	-		GFF3864	0.45	-0.1
3,907,484	-		GFF3864	0.46	-1.1
3,907,495	-		GFF3864	0.47	-0.2
3,907,495	-		GFF3864	0.47	-0.2
3,907,499	+		GFF3864	0.48	-0.1
3,907,507	-		GFF3864	0.49	-1.7
3,907,507	-		GFF3864	0.49	-0.4
3,907,507	-		GFF3864	0.49	-1.7
3,907,507	-		GFF3864	0.49	-0.0
3,907,523	+		GFF3864	0.51	+0.1
3,907,554	+		GFF3864	0.55	+0.8
3,907,556	+		GFF3864	0.55	+1.2
3,907,556	+		GFF3864	0.55	-1.7
3,907,559	+		GFF3864	0.56	-0.4
3,907,564	-		GFF3864	0.56	+0.6
3,907,564	-		GFF3864	0.56	-0.6
3,907,564	-		GFF3864	0.56	-0.2
3,907,564	-		GFF3864	0.56	+0.1
3,907,564	-		GFF3864	0.56	-1.8
3,907,564	-		GFF3864	0.56	-0.6
3,907,567	-		GFF3864	0.57	+0.2
3,907,569	-		GFF3864	0.57	-0.0
3,907,625	-		GFF3864	0.64	-0.3
3,907,628	+		GFF3864	0.65	-1.9
3,907,631	-		GFF3864	0.65	+0.6
3,907,638	+		GFF3864	0.66	-2.2
3,907,638	+		GFF3864	0.66	-0.4
3,907,638	+		GFF3864	0.66	-0.6
3,907,638	+		GFF3864	0.66	+1.0
3,907,638	+		GFF3864	0.66	+0.2
3,907,642	+		GFF3864	0.67	+0.3
3,907,646	-		GFF3864	0.67	-0.9
3,907,646	-		GFF3864	0.67	-0.8
3,907,646	-		GFF3864	0.67	+1.0
3,907,646	-		GFF3864	0.67	-0.5
3,907,646	-		GFF3864	0.67	-1.9
3,907,670	+		GFF3864	0.70	+0.7
3,907,672	-		GFF3864	0.70	+0.3
3,907,673	-		GFF3864	0.71	+0.8
3,907,680	-		GFF3864	0.72	+1.5
3,907,680	-		GFF3864	0.72	-1.1
3,907,700	+		GFF3864	0.74	-0.2
3,907,706	+		GFF3864	0.75	-0.9
3,907,708	-		GFF3864	0.75	+0.5
3,907,728	+		GFF3864	0.78	-0.1
3,907,734	-		GFF3864	0.79	+0.4
3,907,736	-		GFF3864	0.79	-1.4
3,907,736	-		GFF3864	0.79	-0.5
3,907,737	-		GFF3864	0.79	-0.0
3,907,739	+		GFF3864	0.79	+0.5
3,907,744	+		GFF3864	0.80	-0.1
3,907,747	-		GFF3864	0.80	-1.9
3,907,749	+		GFF3864	0.81	-1.5
3,907,781	+		GFF3864	0.85	-1.5
3,907,805	-		GFF3864	0.88	+0.1
3,907,809	+		GFF3864	0.89	+0.4
3,907,819	+		GFF3864	0.90	-0.5
3,907,827	-				-1.5
3,907,839	-				-1.2
3,907,843	+				-0.2
3,907,851	+				+0.7
3,907,851	+				-0.2
3,907,859	-				-2.7
3,907,859	-				-0.9
3,907,859	-				+0.5
3,907,859	-				+0.1
3,907,859	-				-0.4
3,907,869	-				+0.9
3,907,929	+				-0.2
3,907,966	+				+1.2
3,907,990	+				-0.4
3,907,998	+				+0.3
3,907,998	-				+0.8
3,908,003	+				-0.8
3,908,017	+				+0.1
3,908,017	+				-2.0
3,908,017	+				-0.2
3,908,017	+				+0.3
3,908,017	+				-2.5
3,908,017	+				-0.6
3,908,025	-				-1.0
3,908,025	-				-0.0
3,908,025	-				+0.4
3,908,025	-				+1.2
3,908,025	-				-3.1
3,908,025	-				+0.1
3,908,025	-				+0.1
3,908,025	-				-1.5
3,908,027	-				-1.6
3,908,075	+				-0.9
3,908,083	-				-0.4
3,908,083	-				-0.4
3,908,099	-				-2.5
3,908,105	+				-0.7
3,908,109	+				-2.4
3,908,117	+				+0.5
3,908,127	-				+0.4
3,908,161	+				+0.5
3,908,161	+				-0.1
3,908,161	+				+0.9
3,908,169	-				+1.1
3,908,169	-				-1.0
3,908,169	-				-0.7
3,908,184	-				-0.3
3,908,189	-				-0.4
3,908,210	+		GFF3865	0.12	+0.9
3,908,215	+		GFF3865	0.13	-1.0
3,908,215	+		GFF3865	0.13	+0.2
3,908,219	+		GFF3865	0.13	-1.7
3,908,223	-		GFF3865	0.13	+0.3
3,908,224	+		GFF3865	0.14	-0.5
3,908,229	+		GFF3865	0.14	-0.2
3,908,234	+		GFF3865	0.15	-1.7
3,908,239	+		GFF3865	0.15	-0.9
3,908,242	-		GFF3865	0.15	+0.1
3,908,242	-		GFF3865	0.15	+2.0
3,908,242	-		GFF3865	0.15	+0.1
3,908,259	-		GFF3865	0.17	-2.3
3,908,270	+		GFF3865	0.18	-1.8
3,908,273	-		GFF3865	0.19	-0.6
3,908,274	-		GFF3865	0.19	-1.1
3,908,278	-		GFF3865	0.19	-0.4
3,908,278	-		GFF3865	0.19	+0.0
3,908,291	-		GFF3865	0.21	+0.1
3,908,337	-		GFF3865	0.26	-0.2
3,908,343	+		GFF3865	0.26	-1.4
3,908,343	+		GFF3865	0.26	-1.6
3,908,343	+		GFF3865	0.26	-0.1
3,908,343	+		GFF3865	0.26	+0.5
3,908,343	+		GFF3865	0.26	+0.9
3,908,343	+		GFF3865	0.26	-0.3
3,908,351	-		GFF3865	0.27	+0.3
3,908,351	-		GFF3865	0.27	+0.6
3,908,351	-		GFF3865	0.27	-0.7
3,908,351	-		GFF3865	0.27	-0.9
3,908,351	-		GFF3865	0.27	-1.0
3,908,351	-		GFF3865	0.27	-0.2
3,908,353	-		GFF3865	0.27	-0.0
3,908,358	+		GFF3865	0.28	-0.3
3,908,358	+		GFF3865	0.28	-0.4
3,908,358	+		GFF3865	0.28	-1.3
3,908,358	+		GFF3865	0.28	-0.4
3,908,358	+		GFF3865	0.28	+0.9
3,908,358	+		GFF3865	0.28	-0.1
3,908,358	+		GFF3865	0.28	-0.8
3,908,363	+		GFF3865	0.28	-1.5
3,908,366	-		GFF3865	0.29	-0.4
3,908,366	-		GFF3865	0.29	-0.6
3,908,366	-		GFF3865	0.29	-0.6
3,908,366	-		GFF3865	0.29	+0.6
3,908,366	-		GFF3865	0.29	+0.9
3,908,370	+		GFF3865	0.29	-0.6
3,908,371	-		GFF3865	0.29	-0.4
3,908,382	+		GFF3865	0.30	-0.5
3,908,416	-		GFF3865	0.34	+0.2
3,908,419	+		GFF3865	0.34	+0.4
3,908,430	+		GFF3865	0.36	+0.3
3,908,452	+		GFF3865	0.38	+1.6
3,908,460	-		GFF3865	0.39	-1.7
3,908,460	-		GFF3865	0.39	+0.4
3,908,464	+		GFF3865	0.39	-1.1
3,908,464	+		GFF3865	0.39	-0.9
3,908,464	+		GFF3865	0.39	+0.9
3,908,464	+		GFF3865	0.39	-0.2
3,908,464	+		GFF3865	0.39	-0.3
3,908,467	-		GFF3865	0.40	-0.8
3,908,472	-		GFF3865	0.40	-0.5
3,908,472	-		GFF3865	0.40	-0.1
3,908,472	-		GFF3865	0.40	+0.8
3,908,477	-		GFF3865	0.41	+0.3
3,908,493	+		GFF3865	0.42	-0.7
3,908,508	+		GFF3865	0.44	-1.9
3,908,508	+		GFF3865	0.44	+0.3
3,908,508	+		GFF3865	0.44	-2.0
3,908,508	+		GFF3865	0.44	+0.2
3,908,508	+		GFF3865	0.44	-0.7
3,908,510	+		GFF3865	0.44	-0.8
3,908,510	+		GFF3865	0.44	+0.6
3,908,516	-		GFF3865	0.45	-0.3
3,908,516	-		GFF3865	0.45	+1.2
3,908,516	-		GFF3865	0.45	-0.9
3,908,516	-		GFF3865	0.45	+0.6
3,908,516	-		GFF3865	0.45	-2.3
3,908,522	+		GFF3865	0.45	-0.4
3,908,558	-		GFF3865	0.49	-0.2
3,908,574	-		GFF3865	0.51	-0.9
3,908,616	-		GFF3865	0.55	+0.2
3,908,641	-		GFF3865	0.58	-0.9
3,908,650	+		GFF3865	0.59	-1.7
3,908,650	+		GFF3865	0.59	+0.4
3,908,654	+		GFF3865	0.60	-0.5
3,908,745	-		GFF3865	0.69	-0.9
3,908,756	+		GFF3865	0.70	+0.3
3,908,777	-		GFF3865	0.73	+0.3
3,908,779	+		GFF3865	0.73	+0.8
3,908,779	+		GFF3865	0.73	-0.3
3,908,779	+		GFF3865	0.73	+0.2
3,908,787	-		GFF3865	0.74	-0.8
3,908,787	-		GFF3865	0.74	+0.3
3,908,787	-		GFF3865	0.74	-0.0
3,908,787	-		GFF3865	0.74	-2.3
3,908,787	-		GFF3865	0.74	-0.2
3,908,806	-		GFF3865	0.76	-2.0
3,908,821	-		GFF3865	0.77	-0.9
3,908,822	+		GFF3865	0.77	-0.2
3,908,825	-		GFF3865	0.78	+0.3
3,908,826	-		GFF3865	0.78	+0.7
3,908,831	-		GFF3865	0.78	-1.5
3,908,831	-		GFF3865	0.78	+0.6
3,908,853	+		GFF3865	0.81	+0.8
3,908,862	-		GFF3865	0.82	-0.2
3,908,898	+		GFF3865	0.86	-2.9
3,908,906	-		GFF3865	0.86	-1.5
3,908,906	-		GFF3865	0.86	+0.4
3,908,906	-		GFF3865	0.86	-0.2
3,908,907	-		GFF3865	0.87	+0.8
3,908,918	+		GFF3865	0.88	+1.3
3,908,926	-		GFF3865	0.89	-0.3
3,908,928	+		GFF3865	0.89	+0.3
3,908,961	-				+1.8
3,908,978	+				-0.9
3,908,978	+				-0.1
3,909,043	+				+2.1
3,909,072	-				+1.0
3,909,073	+				-1.8
3,909,074	+				-1.4
3,909,083	-				-2.3
3,909,084	+		GFF3866	0.10	-1.0
3,909,088	-		GFF3866	0.11	-0.5
3,909,096	+		GFF3866	0.13	-1.2
3,909,101	+		GFF3866	0.14	-1.1
3,909,101	+		GFF3866	0.14	+1.1
3,909,101	+		GFF3866	0.14	+1.8
3,909,101	+		GFF3866	0.14	-0.4
3,909,101	+		GFF3866	0.14	+0.1
3,909,101	+		GFF3866	0.14	-0.2
3,909,101	+		GFF3866	0.14	-1.9
3,909,101	+		GFF3866	0.14	+0.2
3,909,101	+		GFF3866	0.14	-0.1
3,909,101	+		GFF3866	0.14	+0.8
3,909,101	+		GFF3866	0.14	+0.4
3,909,106	+		GFF3866	0.15	-1.2
3,909,106	+		GFF3866	0.15	+0.5
3,909,106	+		GFF3866	0.15	+1.4
3,909,106	+		GFF3866	0.15	-0.2
3,909,106	+		GFF3866	0.15	-1.4
3,909,108	+		GFF3866	0.16	-1.1
3,909,108	+		GFF3866	0.16	-0.0
3,909,108	+		GFF3866	0.16	-1.5
3,909,109	-		GFF3866	0.16	+1.0
3,909,109	-		GFF3866	0.16	-1.9
3,909,109	-		GFF3866	0.16	-0.8
3,909,109	-		GFF3866	0.16	-1.6
3,909,109	-		GFF3866	0.16	-1.8
3,909,109	-		GFF3866	0.16	+0.3
3,909,109	-		GFF3866	0.16	-0.7
3,909,109	-		GFF3866	0.16	+0.9
3,909,109	-		GFF3866	0.16	-0.4
3,909,114	-		GFF3866	0.17	+0.2
3,909,135	+		GFF3866	0.22	-0.1
3,909,135	+		GFF3866	0.22	-1.5
3,909,143	-		GFF3866	0.24	-0.1
3,909,143	-		GFF3866	0.24	+0.1
3,909,143	-		GFF3866	0.24	-1.7
3,909,143	-		GFF3866	0.24	-0.4
3,909,150	+		GFF3866	0.25	-0.2
3,909,150	+		GFF3866	0.25	-2.0
3,909,156	+		GFF3866	0.26	+0.6
3,909,156	+		GFF3866	0.26	-0.5
3,909,159	-		GFF3866	0.27	-1.9
3,909,186	+		GFF3866	0.33	+0.1
3,909,194	+		GFF3866	0.35	-0.6
3,909,194	+		GFF3866	0.35	-0.1
3,909,202	-		GFF3866	0.37	-2.0
3,909,215	-		GFF3866	0.40	-0.9
3,909,219	+		GFF3866	0.41	-1.4
3,909,221	+		GFF3866	0.41	-1.7
3,909,229	-		GFF3866	0.43	+0.3
3,909,233	+		GFF3866	0.44	+0.3
3,909,239	-		GFF3866	0.45	+1.2
3,909,239	-		GFF3866	0.45	+0.5
3,909,241	-		GFF3866	0.46	+0.0
3,909,259	+		GFF3866	0.50	-1.4
3,909,259	+		GFF3866	0.50	+0.2
3,909,259	+		GFF3866	0.50	-1.1
3,909,259	+		GFF3866	0.50	+0.2
3,909,267	-		GFF3866	0.52	-1.1
3,909,267	-		GFF3866	0.52	-0.2
3,909,282	+		GFF3866	0.55	-2.4
3,909,284	+		GFF3866	0.56	-1.0
3,909,289	+		GFF3866	0.57	-1.7
3,909,290	-		GFF3866	0.57	-1.2
3,909,304	-		GFF3866	0.60	+0.0
3,909,304	-		GFF3866	0.60	-0.4
3,909,306	+		GFF3866	0.61	+0.6
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