Strain Fitness in Sphingobium sp. HT1-2 around GFF3858

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,900,506	+		GFF3857	0.64	-0.3
3,900,506	+		GFF3857	0.64	+0.1
3,900,509	-		GFF3857	0.64	-1.5
3,900,509	-		GFF3857	0.64	-0.5
3,900,509	-		GFF3857	0.64	+0.2
3,900,514	-		GFF3857	0.64	-0.4
3,900,527	-		GFF3857	0.65	-0.6
3,900,532	+		GFF3857	0.65	+1.2
3,900,540	-		GFF3857	0.65	-0.4
3,900,540	-		GFF3857	0.65	+0.4
3,900,540	-		GFF3857	0.65	-1.1
3,900,540	-		GFF3857	0.65	+0.7
3,900,540	-		GFF3857	0.65	+0.3
3,900,555	+		GFF3857	0.66	+1.3
3,900,555	+		GFF3857	0.66	-0.8
3,900,567	+		GFF3857	0.66	-1.4
3,900,567	+		GFF3857	0.66	-0.4
3,900,572	+		GFF3857	0.66	-1.0
3,900,572	+		GFF3857	0.66	+0.4
3,900,575	-		GFF3857	0.66	+0.6
3,900,575	-		GFF3857	0.66	-0.6
3,900,582	+		GFF3857	0.67	-0.9
3,900,584	+		GFF3857	0.67	-1.1
3,900,590	-		GFF3857	0.67	-0.8
3,900,603	-		GFF3857	0.67	-1.6
3,900,635	-		GFF3857	0.69	+0.8
3,900,676	-		GFF3857	0.70	+0.7
3,900,704	+		GFF3857	0.71	-0.3
3,900,712	-		GFF3857	0.71	-0.5
3,900,723	+		GFF3857	0.72	-0.5
3,900,731	-		GFF3857	0.72	-0.8
3,900,738	+		GFF3857	0.72	-1.5
3,900,746	-		GFF3857	0.73	-0.8
3,900,761	+		GFF3857	0.73	+0.2
3,900,772	+		GFF3857	0.74	+0.1
3,900,772	+		GFF3857	0.74	-0.6
3,900,780	-		GFF3857	0.74	+0.3
3,900,797	-		GFF3857	0.75	-0.9
3,900,797	-		GFF3857	0.75	-0.9
3,900,839	-		GFF3857	0.76	-1.7
3,900,841	+		GFF3857	0.76	-0.2
3,900,849	-		GFF3857	0.77	+0.1
3,900,849	-		GFF3857	0.77	-0.7
3,900,850	+		GFF3857	0.77	+0.3
3,900,864	-		GFF3857	0.77	-0.4
3,900,888	-		GFF3857	0.78	+0.3
3,900,903	+		GFF3857	0.79	+0.2
3,900,903	+		GFF3857	0.79	-0.2
3,900,909	+		GFF3857	0.79	-0.4
3,900,910	-		GFF3857	0.79	-0.3
3,900,910	-		GFF3857	0.79	+0.6
3,900,910	-		GFF3857	0.79	-2.0
3,900,917	-		GFF3857	0.79	-0.6
3,900,917	-		GFF3857	0.79	-0.7
3,900,917	-		GFF3857	0.79	+0.7
3,900,953	-		GFF3857	0.80	+0.1
3,900,953	-		GFF3857	0.80	+0.6
3,900,958	+		GFF3857	0.81	+0.2
3,900,960	-		GFF3857	0.81	+0.6
3,900,973	-		GFF3857	0.81	+0.1
3,900,973	-		GFF3857	0.81	+0.2
3,901,034	+		GFF3857	0.83	-3.1
3,901,042	+		GFF3857	0.84	-0.4
3,901,047	+		GFF3857	0.84	+0.6
3,901,047	+		GFF3857	0.84	-0.6
3,901,053	+		GFF3857	0.84	+0.0
3,901,055	+		GFF3857	0.84	+0.5
3,901,055	+		GFF3857	0.84	-0.6
3,901,055	+		GFF3857	0.84	-1.8
3,901,055	+		GFF3857	0.84	-0.4
3,901,055	+		GFF3857	0.84	-2.0
3,901,055	+		GFF3857	0.84	+0.1
3,901,055	+		GFF3857	0.84	-1.9
3,901,055	+		GFF3857	0.84	-1.6
3,901,055	+		GFF3857	0.84	+0.5
3,901,055	+		GFF3857	0.84	-0.4
3,901,055	+		GFF3857	0.84	+0.2
3,901,055	+		GFF3857	0.84	-0.3
3,901,055	+		GFF3857	0.84	-0.3
3,901,055	+		GFF3857	0.84	-0.7
3,901,055	+		GFF3857	0.84	-1.9
3,901,055	+		GFF3857	0.84	+0.6
3,901,055	+		GFF3857	0.84	-1.3
3,901,063	-		GFF3857	0.84	+1.4
3,901,063	-		GFF3857	0.84	+0.2
3,901,063	-		GFF3857	0.84	-2.3
3,901,063	-		GFF3857	0.84	-1.1
3,901,063	-		GFF3857	0.84	-1.4
3,901,063	-		GFF3857	0.84	-0.4
3,901,063	-		GFF3857	0.84	-0.4
3,901,063	-		GFF3857	0.84	+0.9
3,901,063	-		GFF3857	0.84	-2.0
3,901,063	-		GFF3857	0.84	+0.2
3,901,063	-		GFF3857	0.84	+0.0
3,901,063	-		GFF3857	0.84	-0.4
3,901,063	-		GFF3857	0.84	-1.4
3,901,063	-		GFF3857	0.84	-1.0
3,901,063	-		GFF3857	0.84	-0.7
3,901,063	-		GFF3857	0.84	-0.2
3,901,063	-		GFF3857	0.84	+1.1
3,901,063	-		GFF3857	0.84	-0.7
3,901,063	-		GFF3857	0.84	-0.6
3,901,063	-		GFF3857	0.84	+0.2
3,901,063	-		GFF3857	0.84	-0.5
3,901,063	-		GFF3857	0.84	-1.2
3,901,063	-		GFF3857	0.84	-0.9
3,901,090	-		GFF3857	0.85	-0.6
3,901,094	-		GFF3857	0.86	-0.1
3,901,154	-		GFF3857	0.88	+0.9
3,901,170	+		GFF3857	0.88	-2.5
3,901,183	-		GFF3857	0.89	-0.8
3,901,199	+		GFF3857	0.89	+0.2
3,901,207	-		GFF3857	0.90	-0.3
3,901,216	+				-0.2
3,901,219	-				-0.8
3,901,221	+				-1.8
3,901,221	+				-0.0
3,901,221	+				-0.4
3,901,221	+				-2.1
3,901,221	+				-1.6
3,901,229	-				+1.1
3,901,229	-				+1.3
3,901,229	-				-1.4
3,901,230	-				+0.9
3,901,246	-				+0.0
3,901,250	-				+1.6
3,901,254	+				+1.2
3,901,260	+				-0.3
3,901,267	+				+0.7
3,901,279	+				+0.4
3,901,279	+				-0.9
3,901,279	+				+1.0
3,901,287	-				-1.4
3,901,334	+				-1.2
3,901,334	+				-1.9
3,901,342	-				-0.1
3,901,344	+				+1.5
3,901,344	+				-0.6
3,901,375	-				-0.3
3,901,391	+				-0.1
3,901,402	+				-0.2
3,901,410	-				-0.9
3,901,430	+				-1.5
3,901,438	-				+0.2
3,901,438	-				-1.2
3,901,457	+				+0.0
3,901,457	+				-0.8
3,901,498	+				-0.3
3,901,503	+				-0.9
3,901,503	+				-0.9
3,901,503	+				+1.6
3,901,503	+				-0.9
3,901,503	+				+0.7
3,901,503	+				-1.2
3,901,503	+				+0.5
3,901,503	+				-1.7
3,901,511	-				+0.9
3,901,511	-				-2.2
3,901,511	-				-0.2
3,901,511	-				-0.9
3,901,511	-				-0.0
3,901,511	-				-1.0
3,901,511	-				-0.9
3,901,514	+				-0.5
3,901,529	+				-1.2
3,901,537	-		GFF3858	0.10	+0.8
3,901,537	-		GFF3858	0.10	+0.4
3,901,603	+		GFF3858	0.32	-0.0
3,901,606	-		GFF3858	0.33	-0.9
3,901,623	+		GFF3858	0.39	+0.2
3,901,623	+		GFF3858	0.39	-1.1
3,901,633	+		GFF3858	0.42	-0.8
3,901,638	+		GFF3858	0.44	-1.7
3,901,652	-		GFF3858	0.49	-0.0
3,901,655	-		GFF3858	0.50	+0.2
3,901,664	+		GFF3858	0.53	+0.4
3,901,693	-		GFF3858	0.62	-0.8
3,901,695	+		GFF3858	0.63	+1.2
3,901,703	+		GFF3858	0.66	+0.3
3,901,721	-		GFF3858	0.72	-2.1
3,901,769	+		GFF3858	0.88	+0.5
3,901,770	-		GFF3858	0.88	+0.2
3,901,837	+				+0.2
3,901,838	+				-0.6
3,901,846	-				-1.4
3,901,848	+				-2.1
3,901,848	+				-0.5
3,901,848	+				-2.0
3,901,863	-				-0.2
3,901,872	-		GFF3859	0.10	-0.8
3,901,877	-		GFF3859	0.11	-1.0
3,901,898	+		GFF3859	0.15	-0.9
3,901,906	-		GFF3859	0.16	+0.6
3,901,906	-		GFF3859	0.16	-0.4
3,901,906	-		GFF3859	0.16	-0.4
3,901,917	+		GFF3859	0.18	+0.4
3,901,928	+		GFF3859	0.20	-0.5
3,901,955	+		GFF3859	0.24	-0.6
3,901,975	-		GFF3859	0.28	-0.6
3,901,976	+		GFF3859	0.28	-0.6
3,901,981	+		GFF3859	0.29	-0.9
3,902,010	+		GFF3859	0.34	-0.8
3,902,010	-		GFF3859	0.34	-0.3
3,902,023	-		GFF3859	0.36	-2.6
3,902,039	+		GFF3859	0.39	+1.1
3,902,039	+		GFF3859	0.39	-2.6
3,902,042	-		GFF3859	0.39	+1.4
3,902,042	-		GFF3859	0.39	+0.5
3,902,063	+		GFF3859	0.43	-0.5
3,902,068	+		GFF3859	0.43	-0.4
3,902,068	+		GFF3859	0.43	-0.0
3,902,068	+		GFF3859	0.43	-1.1
3,902,068	+		GFF3859	0.43	+0.5
3,902,068	+		GFF3859	0.43	-1.2
3,902,068	+		GFF3859	0.43	-0.1
3,902,068	+		GFF3859	0.43	-0.7
3,902,073	+		GFF3859	0.44	+0.0
3,902,075	+		GFF3859	0.45	-0.5
3,902,075	+		GFF3859	0.45	-1.1
3,902,075	+		GFF3859	0.45	-1.9
3,902,075	+		GFF3859	0.45	+0.3
3,902,080	+		GFF3859	0.45	+0.1
3,902,081	-		GFF3859	0.46	-0.2
3,902,083	-		GFF3859	0.46	+0.6
3,902,083	-		GFF3859	0.46	+0.3
3,902,083	-		GFF3859	0.46	+1.3
3,902,116	-		GFF3859	0.52	-0.3
3,902,138	-		GFF3859	0.55	-0.0
3,902,140	-		GFF3859	0.56	+0.4
3,902,141	+		GFF3859	0.56	+1.1
3,902,147	+		GFF3859	0.57	+1.5
3,902,151	+		GFF3859	0.57	-1.2
3,902,175	+		GFF3859	0.61	-2.6
3,902,175	+		GFF3859	0.61	-0.9
3,902,183	-		GFF3859	0.63	+0.5
3,902,188	-		GFF3859	0.64	-1.3
3,902,188	-		GFF3859	0.64	-1.4
3,902,188	-		GFF3859	0.64	-1.2
3,902,194	-		GFF3859	0.65	-1.9
3,902,194	-		GFF3859	0.65	-1.5
3,902,196	+		GFF3859	0.65	+0.1
3,902,203	+		GFF3859	0.66	+1.0
3,902,211	+		GFF3859	0.68	-0.0
3,902,253	-		GFF3859	0.75	+0.1
3,902,298	+		GFF3859	0.82	+0.3
3,902,301	-		GFF3859	0.83	+1.2
3,902,301	-		GFF3859	0.83	+0.2
3,902,306	-		GFF3859	0.84	-1.6
3,902,312	+		GFF3859	0.85	-0.2
3,902,312	+		GFF3859	0.85	+1.2
3,902,312	+		GFF3859	0.85	-2.9
3,902,312	+		GFF3859	0.85	-0.6
3,902,312	+		GFF3859	0.85	-1.0
3,902,312	+		GFF3859	0.85	-1.2
3,902,312	+		GFF3859	0.85	+2.0
3,902,314	+		GFF3859	0.85	+0.5
3,902,314	+		GFF3859	0.85	-2.4
3,902,314	+		GFF3859	0.85	+0.6
3,902,320	-		GFF3859	0.86	+0.8
3,902,320	-		GFF3859	0.86	+0.5
3,902,320	-		GFF3859	0.86	-0.1
3,902,322	-		GFF3859	0.86	-1.3
3,902,322	-		GFF3859	0.86	-1.3
3,902,342	-		GFF3859	0.90	+0.2
3,902,358	-				-0.6
3,902,391	+				+0.6
3,902,399	-				+1.0
3,902,401	-				-0.2
3,902,405	+				+0.6
3,902,406	-				+1.0
3,902,412	+				+0.6
3,902,412	+				-0.6
3,902,424	+				-0.2
3,902,430	+				+0.1
3,902,438	+				-0.7
3,902,443	+				-0.5
3,902,488	-				-1.1
3,902,488	-				+0.1
3,902,488	-				-0.1
3,902,499	+				-0.4
3,902,499	+				+0.2
3,902,501	+				-0.1
3,902,503	+				-0.2
3,902,505	-				-0.3
3,902,507	+				-0.4
3,902,521	+				-0.7
3,902,522	+				+0.5
3,902,530	-				+0.4
3,902,565	+				+0.8
3,902,579	+				+0.2
3,902,584	+				-0.4
3,902,585	+				-0.5
3,902,587	-				+0.2
3,902,591	+				-1.0
3,902,591	+				-1.2
3,902,591	+				-1.2
3,902,591	+				-1.6
3,902,591	+				+0.7
3,902,591	+				-0.0
3,902,594	-				-0.5
3,902,599	-				-1.7
3,902,599	-				+0.9
3,902,599	-				-0.8
3,902,599	-				-1.4
3,902,600	-		GFF3860	0.10	-0.4
3,902,617	+		GFF3860	0.13	-0.6
3,902,617	+		GFF3860	0.13	+1.5
3,902,625	-		GFF3860	0.15	-0.9
3,902,681	+		GFF3860	0.25	+0.9
3,902,681	+		GFF3860	0.25	-0.9
3,902,681	+		GFF3860	0.25	+0.9
3,902,681	+		GFF3860	0.25	+0.1
3,902,681	+		GFF3860	0.25	+0.7
3,902,681	+		GFF3860	0.25	-0.3
3,902,681	+		GFF3860	0.25	-0.6
3,902,684	-		GFF3860	0.26	+0.1
3,902,689	-		GFF3860	0.27	-2.0
3,902,689	-		GFF3860	0.27	-0.6
3,902,689	-		GFF3860	0.27	-0.6
3,902,689	-		GFF3860	0.27	-0.9
3,902,689	-		GFF3860	0.27	+0.5
3,902,689	-		GFF3860	0.27	-1.6
3,902,689	-		GFF3860	0.27	-0.4
3,902,689	-		GFF3860	0.27	-0.4
3,902,689	-		GFF3860	0.27	-0.6
3,902,689	-		GFF3860	0.27	-0.3
3,902,694	-		GFF3860	0.28	-1.0
3,902,707	-		GFF3860	0.30	-2.1
3,902,707	-		GFF3860	0.30	-0.0
3,902,707	-		GFF3860	0.30	-0.9
3,902,709	-		GFF3860	0.31	+0.2
3,902,712	+		GFF3860	0.31	+0.1
3,902,712	+		GFF3860	0.31	-0.1
3,902,712	+		GFF3860	0.31	-0.5
3,902,712	+		GFF3860	0.31	-2.2
3,902,717	+		GFF3860	0.32	+1.1
3,902,738	+		GFF3860	0.36	+0.7
3,902,760	+		GFF3860	0.40	-1.6
3,902,763	-		GFF3860	0.41	+0.2
3,902,765	+		GFF3860	0.41	-0.6
3,902,765	+		GFF3860	0.41	+0.1
3,902,765	+		GFF3860	0.41	-1.0
3,902,770	+		GFF3860	0.42	-2.2
3,902,773	-		GFF3860	0.43	-1.7
3,902,773	-		GFF3860	0.43	+0.5
3,902,773	-		GFF3860	0.43	+1.6
3,902,773	-		GFF3860	0.43	-0.6
3,902,773	-		GFF3860	0.43	+0.1
3,902,773	-		GFF3860	0.43	-0.8
3,902,791	+		GFF3860	0.46	+1.4
3,902,797	-		GFF3860	0.47	-0.2
3,902,803	-		GFF3860	0.48	+0.9