Strain Fitness in Sphingobium sp. HT1-2 around GFF379

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF375 and GFF376 overlap by 4 nucleotidesGFF376 and GFF377 are separated by 7 nucleotidesGFF377 and GFF378 are separated by 27 nucleotidesGFF378 and GFF379 are separated by 20 nucleotidesGFF379 and GFF380 overlap by 4 nucleotides GFF375 - Peptidoglycan lipid II flippase MurJ, at 367,732 to 369,306 GFF375 GFF376 - hypothetical protein, at 369,303 to 369,422 GFF376 GFF377 - Protein-export protein SecB (maintains pre-export unfolded state), at 369,430 to 369,933 GFF377 GFF378 - hypothetical protein, at 369,961 to 370,092 GFF378 GFF379 - Tim44-like domain protein, at 370,113 to 370,811 GFF379 GFF380 - Membrane-bound lytic murein transglycosylase A, at 370,808 to 372,073 GFF380 Position (kb) 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1at 369.308 kb on - strandat 369.326 kb on + strand, within GFF376at 369.333 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.339 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.344 kb on + strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.347 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.352 kb on - strand, within GFF376at 369.354 kb on - strand, within GFF376at 369.362 kb on + strand, within GFF376at 369.377 kb on - strand, within GFF376at 369.385 kb on + strand, within GFF376at 369.385 kb on + strand, within GFF376at 369.393 kb on - strand, within GFF376at 369.393 kb on - strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.395 kb on + strand, within GFF376at 369.403 kb on - strand, within GFF376at 369.415 kb on + strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.439 kb on + strandat 369.458 kb on - strandat 369.460 kb on + strandat 369.471 kb on + strandat 369.479 kb on - strandat 369.479 kb on - strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.480 kb on + strandat 369.488 kb on - strand, within GFF377at 369.488 kb on - strand, within GFF377at 369.488 kb on - strand, within GFF377at 369.503 kb on - strand, within GFF377at 369.522 kb on - strand, within GFF377at 369.561 kb on - strand, within GFF377at 369.561 kb on - strand, within GFF377at 369.561 kb on - strand, within GFF377at 369.561 kb on - strand, within GFF377at 369.574 kb on + strand, within GFF377at 369.603 kb on + strand, within GFF377at 369.610 kb on + strand, within GFF377at 369.611 kb on - strand, within GFF377at 369.817 kb on - strand, within GFF377at 369.945 kb on - strandat 369.945 kb on - strandat 369.945 kb on - strandat 369.945 kb on - strandat 369.952 kb on - strandat 369.979 kb on - strand, within GFF378at 369.979 kb on - strand, within GFF378at 369.979 kb on - strand, within GFF378at 369.988 kb on + strand, within GFF378at 369.996 kb on - strand, within GFF378at 370.024 kb on + strand, within GFF378at 370.024 kb on + strand, within GFF378at 370.032 kb on - strand, within GFF378at 370.032 kb on - strand, within GFF378at 370.039 kb on + strand, within GFF378at 370.039 kb on + strand, within GFF378at 370.065 kb on + strand, within GFF378at 370.070 kb on + strand, within GFF378at 370.070 kb on + strand, within GFF378at 370.078 kb on - strand, within GFF378at 370.078 kb on - strand, within GFF378at 370.078 kb on - strand, within GFF378at 370.078 kb on - strand, within GFF378at 370.096 kb on + strandat 370.108 kb on + strandat 370.141 kb on + strandat 370.143 kb on + strandat 370.143 kb on + strandat 370.143 kb on + strandat 370.143 kb on + strandat 370.143 kb on + strandat 370.173 kb on + strandat 370.218 kb on - strand, within GFF379at 370.241 kb on + strand, within GFF379at 370.244 kb on + strand, within GFF379at 370.288 kb on + strand, within GFF379at 370.303 kb on - strand, within GFF379at 370.376 kb on - strand, within GFF379at 370.385 kb on + strand, within GFF379at 370.385 kb on + strand, within GFF379at 370.393 kb on - strand, within GFF379at 370.393 kb on - strand, within GFF379at 370.485 kb on + strand, within GFF379at 370.493 kb on - strand, within GFF379at 370.504 kb on + strand, within GFF379at 370.507 kb on - strand, within GFF379at 370.512 kb on + strand, within GFF379at 370.514 kb on + strand, within GFF379at 370.557 kb on + strand, within GFF379at 370.737 kb on + strand, within GFF379at 370.770 kb on + strandat 370.806 kb on + strandat 370.806 kb on + strandat 370.806 kb on + strandat 370.806 kb on + strandat 370.814 kb on - strandat 370.814 kb on - strandat 370.814 kb on - strandat 370.814 kb on - strandat 370.872 kb on + strandat 370.896 kb on + strandat 370.904 kb on - strandat 370.909 kb on - strandat 370.946 kb on + strand, within GFF380at 370.946 kb on + strand, within GFF380at 370.962 kb on + strand, within GFF380at 370.962 kb on + strand, within GFF380at 370.970 kb on - strand, within GFF380at 370.970 kb on - strand, within GFF380at 370.970 kb on - strand, within GFF380at 370.972 kb on + strand, within GFF380at 371.013 kb on - strand, within GFF380at 371.015 kb on + strand, within GFF380at 371.015 kb on + strand, within GFF380at 371.015 kb on + strand, within GFF380at 371.020 kb on + strand, within GFF380at 371.023 kb on - strand, within GFF380at 371.028 kb on + strand, within GFF380at 371.075 kb on - strand, within GFF380at 371.076 kb on + strand, within GFF380at 371.084 kb on - strand, within GFF380at 371.102 kb on + strand, within GFF380at 371.147 kb on + strand, within GFF380at 371.147 kb on + strand, within GFF380at 371.147 kb on + strand, within GFF380at 371.150 kb on - strand, within GFF380at 371.150 kb on - strand, within GFF380at 371.150 kb on - strand, within GFF380at 371.155 kb on - strand, within GFF380at 371.155 kb on - strand, within GFF380at 371.169 kb on + strand, within GFF380at 371.174 kb on + strand, within GFF380at 371.174 kb on + strand, within GFF380at 371.174 kb on + strand, within GFF380at 371.174 kb on + strand, within GFF380at 371.177 kb on - strand, within GFF380at 371.182 kb on - strand, within GFF380at 371.182 kb on - strand, within GFF380at 371.182 kb on - strand, within GFF380at 371.182 kb on - strand, within GFF380at 371.182 kb on - strand, within GFF380at 371.182 kb on - strand, within GFF380at 371.198 kb on + strand, within GFF380at 371.206 kb on - strand, within GFF380at 371.206 kb on - strand, within GFF380at 371.244 kb on + strand, within GFF380at 371.255 kb on + strand, within GFF380at 371.263 kb on - strand, within GFF380at 371.263 kb on - strand, within GFF380at 371.263 kb on - strand, within GFF380at 371.269 kb on + strand, within GFF380at 371.269 kb on + strand, within GFF380at 371.269 kb on + strand, within GFF380at 371.269 kb on + strand, within GFF380at 371.272 kb on - strand, within GFF380at 371.284 kb on - strand, within GFF380at 371.289 kb on + strand, within GFF380at 371.334 kb on + strand, within GFF380at 371.334 kb on + strand, within GFF380at 371.366 kb on + strand, within GFF380at 371.382 kb on + strand, within GFF380at 371.390 kb on - strand, within GFF380at 371.390 kb on - strand, within GFF380at 371.400 kb on - strand, within GFF380at 371.400 kb on - strand, within GFF380at 371.403 kb on + strand, within GFF380at 371.403 kb on + strand, within GFF380at 371.411 kb on + strand, within GFF380at 371.411 kb on - strand, within GFF380at 371.412 kb on - strand, within GFF380at 371.432 kb on + strand, within GFF380at 371.432 kb on + strand, within GFF380at 371.438 kb on - strand, within GFF380at 371.440 kb on - strand, within GFF380at 371.440 kb on - strand, within GFF380at 371.440 kb on - strand, within GFF380at 371.440 kb on - strand, within GFF380at 371.440 kb on - strand, within GFF380at 371.502 kb on + strand, within GFF380at 371.502 kb on + strand, within GFF380at 371.507 kb on + strand, within GFF380at 371.507 kb on + strand, within GFF380at 371.510 kb on - strand, within GFF380at 371.510 kb on - strand, within GFF380at 371.510 kb on - strand, within GFF380at 371.512 kb on + strand, within GFF380at 371.515 kb on - strand, within GFF380at 371.520 kb on - strand, within GFF380at 371.546 kb on + strand, within GFF380at 371.551 kb on + strand, within GFF380at 371.552 kb on + strand, within GFF380at 371.552 kb on + strand, within GFF380at 371.554 kb on + strand, within GFF380at 371.560 kb on - strand, within GFF380at 371.560 kb on - strand, within GFF380at 371.565 kb on - strand, within GFF380at 371.565 kb on - strand, within GFF380at 371.565 kb on - strand, within GFF380at 371.567 kb on + strand, within GFF380at 371.568 kb on + strand, within GFF380at 371.568 kb on + strand, within GFF380at 371.568 kb on + strand, within GFF380at 371.568 kb on + strand, within GFF380at 371.569 kb on + strand, within GFF380at 371.576 kb on - strand, within GFF380at 371.576 kb on - strand, within GFF380at 371.604 kb on + strand, within GFF380at 371.607 kb on + strand, within GFF380at 371.613 kb on + strand, within GFF380at 371.615 kb on - strand, within GFF380at 371.639 kb on - strand, within GFF380at 371.668 kb on + strand, within GFF380at 371.668 kb on + strand, within GFF380at 371.668 kb on + strand, within GFF380at 371.668 kb on + strand, within GFF380at 371.668 kb on + strand, within GFF380at 371.672 kb on - strand, within GFF380at 371.674 kb on + strand, within GFF380at 371.676 kb on - strand, within GFF380at 371.687 kb on - strand, within GFF380at 371.692 kb on - strand, within GFF380at 371.692 kb on - strand, within GFF380at 371.723 kb on - strand, within GFF380at 371.754 kb on + strand, within GFF380at 371.781 kb on + strand, within GFF380at 371.781 kb on + strand, within GFF380at 371.789 kb on - strand, within GFF380at 371.810 kb on + strand, within GFF380

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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369,308 - -0.3
369,326 + GFF376 0.19 +0.6
369,333 + GFF376 0.25 -0.2
369,339 + GFF376 0.30 -1.6
369,339 + GFF376 0.30 +0.1
369,339 + GFF376 0.30 -0.4
369,339 + GFF376 0.30 +0.8
369,339 + GFF376 0.30 -0.3
369,339 + GFF376 0.30 +0.4
369,339 + GFF376 0.30 +0.9
369,339 + GFF376 0.30 +0.3
369,339 + GFF376 0.30 +0.5
369,339 + GFF376 0.30 -1.1
369,339 + GFF376 0.30 -0.6
369,344 + GFF376 0.34 -2.3
369,344 + GFF376 0.34 -0.0
369,344 + GFF376 0.34 -0.6
369,344 + GFF376 0.34 +1.1
369,344 + GFF376 0.34 +0.8
369,347 - GFF376 0.37 -0.0
369,347 - GFF376 0.37 -1.1
369,347 - GFF376 0.37 +0.2
369,347 - GFF376 0.37 +0.4
369,347 - GFF376 0.37 +0.9
369,347 - GFF376 0.37 -0.3
369,347 - GFF376 0.37 -1.7
369,347 - GFF376 0.37 -0.4
369,347 - GFF376 0.37 -2.9
369,347 - GFF376 0.37 -0.3
369,347 - GFF376 0.37 -0.6
369,347 - GFF376 0.37 -0.6
369,347 - GFF376 0.37 -0.3
369,347 - GFF376 0.37 -0.4
369,347 - GFF376 0.37 -0.8
369,352 - GFF376 0.41 +0.2
369,352 - GFF376 0.41 -0.8
369,352 - GFF376 0.41 -1.7
369,352 - GFF376 0.41 +0.7
369,352 - GFF376 0.41 -1.4
369,352 - GFF376 0.41 -0.3
369,354 - GFF376 0.42 -1.2
369,362 + GFF376 0.49 -0.8
369,377 - GFF376 0.62 -0.1
369,385 + GFF376 0.68 -1.6
369,385 + GFF376 0.68 -1.3
369,393 - GFF376 0.75 +0.4
369,393 - GFF376 0.75 -1.7
369,395 + GFF376 0.77 -0.1
369,395 + GFF376 0.77 +0.1
369,395 + GFF376 0.77 +0.5
369,395 + GFF376 0.77 -0.9
369,395 + GFF376 0.77 -0.1
369,395 + GFF376 0.77 +0.5
369,403 - GFF376 0.83 -0.3
369,415 + -0.2
369,436 - +0.8
369,436 - -0.4
369,439 + +0.2
369,458 - +0.5
369,460 + +0.0
369,471 + -0.2
369,479 - +0.7
369,479 - -0.0
369,480 + -1.2
369,480 + +0.9
369,480 + -2.1
369,480 + +0.4
369,480 + +0.7
369,480 + -1.6
369,488 - GFF377 0.12 +0.9
369,488 - GFF377 0.12 +1.3
369,488 - GFF377 0.12 -0.5
369,503 - GFF377 0.14 -0.6
369,522 - GFF377 0.18 +1.3
369,561 - GFF377 0.26 -1.4
369,561 - GFF377 0.26 -0.5
369,561 - GFF377 0.26 -0.3
369,561 - GFF377 0.26 -0.4
369,574 + GFF377 0.29 -1.2
369,603 + GFF377 0.34 +1.2
369,610 + GFF377 0.36 -1.7
369,611 - GFF377 0.36 +0.7
369,817 - GFF377 0.77 -1.9
369,945 - +0.7
369,945 - -0.9
369,945 - +1.4
369,945 - -2.3
369,952 - +0.9
369,979 - GFF378 0.14 -0.3
369,979 - GFF378 0.14 -0.0
369,979 - GFF378 0.14 -2.3
369,988 + GFF378 0.20 -0.0
369,996 - GFF378 0.27 -0.9
370,024 + GFF378 0.48 +0.0
370,024 + GFF378 0.48 -1.3
370,032 - GFF378 0.54 -0.3
370,032 - GFF378 0.54 -0.4
370,039 + GFF378 0.59 +0.7
370,039 + GFF378 0.59 -0.9
370,065 + GFF378 0.79 +0.6
370,070 + GFF378 0.83 +0.3
370,070 + GFF378 0.83 -1.2
370,078 - GFF378 0.89 -0.3
370,078 - GFF378 0.89 -0.8
370,078 - GFF378 0.89 -1.6
370,078 - GFF378 0.89 -0.4
370,096 + -1.1
370,108 + -1.3
370,141 + -0.2
370,143 + -0.8
370,143 + -1.4
370,143 + +0.7
370,143 + +0.2
370,143 + +1.2
370,173 + -1.5
370,218 - GFF379 0.15 -0.4
370,241 + GFF379 0.18 +0.5
370,244 + GFF379 0.19 -0.8
370,288 + GFF379 0.25 -0.6
370,303 - GFF379 0.27 -1.6
370,376 - GFF379 0.38 -1.3
370,385 + GFF379 0.39 -1.5
370,385 + GFF379 0.39 +1.3
370,393 - GFF379 0.40 -1.5
370,393 - GFF379 0.40 -1.8
370,485 + GFF379 0.53 -1.3
370,493 - GFF379 0.54 -1.3
370,504 + GFF379 0.56 -1.4
370,507 - GFF379 0.56 -1.2
370,512 + GFF379 0.57 -1.8
370,514 + GFF379 0.57 -1.9
370,557 + GFF379 0.64 -0.0
370,737 + GFF379 0.89 -1.8
370,770 + +1.4
370,806 + +0.2
370,806 + -1.0
370,806 + -1.2
370,806 + -0.0
370,814 - +0.1
370,814 - -1.5
370,814 - +0.6
370,814 - +0.5
370,872 + -1.3
370,896 + -0.7
370,904 - -0.3
370,909 - +0.7
370,946 + GFF380 0.11 +0.4
370,946 + GFF380 0.11 +1.0
370,962 + GFF380 0.12 +1.2
370,962 + GFF380 0.12 -1.6
370,970 - GFF380 0.13 +1.5
370,970 - GFF380 0.13 -0.8
370,970 - GFF380 0.13 -0.5
370,972 + GFF380 0.13 -2.2
371,013 - GFF380 0.16 +1.3
371,015 + GFF380 0.16 -1.3
371,015 + GFF380 0.16 -1.3
371,015 + GFF380 0.16 -0.7
371,020 + GFF380 0.17 +0.6
371,023 - GFF380 0.17 -1.0
371,028 + GFF380 0.17 -0.5
371,075 - GFF380 0.21 -0.7
371,076 + GFF380 0.21 -1.3
371,084 - GFF380 0.22 -0.3
371,102 + GFF380 0.23 -1.3
371,147 + GFF380 0.27 +0.8
371,147 + GFF380 0.27 -1.3
371,147 + GFF380 0.27 -1.9
371,150 - GFF380 0.27 +0.5
371,150 - GFF380 0.27 -0.4
371,150 - GFF380 0.27 -0.3
371,155 - GFF380 0.27 -0.6
371,155 - GFF380 0.27 -0.2
371,169 + GFF380 0.29 +1.2
371,174 + GFF380 0.29 +0.4
371,174 + GFF380 0.29 +0.8
371,174 + GFF380 0.29 +0.1
371,174 + GFF380 0.29 -0.1
371,177 - GFF380 0.29 -1.7
371,182 - GFF380 0.30 -0.8
371,182 - GFF380 0.30 -1.3
371,182 - GFF380 0.30 -0.3
371,182 - GFF380 0.30 -0.0
371,182 - GFF380 0.30 -3.3
371,182 - GFF380 0.30 +0.1
371,198 + GFF380 0.31 -0.9
371,206 - GFF380 0.31 -1.9
371,206 - GFF380 0.31 -0.5
371,244 + GFF380 0.34 -1.4
371,255 + GFF380 0.35 -1.0
371,263 - GFF380 0.36 +0.7
371,263 - GFF380 0.36 -1.7
371,263 - GFF380 0.36 -1.2
371,269 + GFF380 0.36 -1.9
371,269 + GFF380 0.36 -0.3
371,269 + GFF380 0.36 -1.4
371,269 + GFF380 0.36 +0.6
371,272 - GFF380 0.37 +0.6
371,284 - GFF380 0.38 -1.1
371,289 + GFF380 0.38 -0.2
371,334 + GFF380 0.42 -0.2
371,334 + GFF380 0.42 -0.2
371,366 + GFF380 0.44 +1.0
371,382 + GFF380 0.45 -0.3
371,390 - GFF380 0.46 +0.2
371,390 - GFF380 0.46 +0.5
371,400 - GFF380 0.47 +0.0
371,400 - GFF380 0.47 -0.5
371,403 + GFF380 0.47 -1.6
371,403 + GFF380 0.47 +0.2
371,411 + GFF380 0.48 -1.0
371,411 - GFF380 0.48 +0.6
371,412 - GFF380 0.48 +0.8
371,432 + GFF380 0.49 -0.2
371,432 + GFF380 0.49 -2.0
371,438 - GFF380 0.50 +0.4
371,440 - GFF380 0.50 +1.7
371,440 - GFF380 0.50 -0.8
371,440 - GFF380 0.50 -0.4
371,440 - GFF380 0.50 +0.7
371,440 - GFF380 0.50 +0.1
371,502 + GFF380 0.55 -0.6
371,502 + GFF380 0.55 -0.0
371,507 + GFF380 0.55 +0.0
371,507 + GFF380 0.55 -0.5
371,510 - GFF380 0.55 -0.9
371,510 - GFF380 0.55 -0.1
371,510 - GFF380 0.55 -0.6
371,512 + GFF380 0.56 -0.1
371,515 - GFF380 0.56 +0.4
371,520 - GFF380 0.56 +0.5
371,546 + GFF380 0.58 +0.7
371,551 + GFF380 0.59 +0.0
371,552 + GFF380 0.59 +0.6
371,552 + GFF380 0.59 -0.3
371,554 + GFF380 0.59 +0.8
371,560 - GFF380 0.59 +0.1
371,560 - GFF380 0.59 -1.2
371,565 - GFF380 0.60 +0.8
371,565 - GFF380 0.60 -0.7
371,565 - GFF380 0.60 -0.2
371,567 + GFF380 0.60 -0.2
371,568 + GFF380 0.60 +0.9
371,568 + GFF380 0.60 -1.9
371,568 + GFF380 0.60 +0.4
371,568 + GFF380 0.60 -0.2
371,569 + GFF380 0.60 -0.7
371,576 - GFF380 0.61 -1.4
371,576 - GFF380 0.61 -0.5
371,604 + GFF380 0.63 +0.6
371,607 + GFF380 0.63 -0.3
371,613 + GFF380 0.64 -0.5
371,615 - GFF380 0.64 +0.1
371,639 - GFF380 0.66 +0.2
371,668 + GFF380 0.68 +0.9
371,668 + GFF380 0.68 -1.0
371,668 + GFF380 0.68 -0.5
371,668 + GFF380 0.68 -0.4
371,668 + GFF380 0.68 -1.8
371,672 - GFF380 0.68 +0.2
371,674 + GFF380 0.68 +1.3
371,676 - GFF380 0.69 -1.0
371,687 - GFF380 0.69 -2.0
371,692 - GFF380 0.70 -0.5
371,692 - GFF380 0.70 +0.2
371,723 - GFF380 0.72 -0.1
371,754 + GFF380 0.75 +1.3
371,781 + GFF380 0.77 -1.2
371,781 + GFF380 0.77 -1.4
371,789 - GFF380 0.77 +1.2
371,810 + GFF380 0.79 -1.2

Or see this region's nucleotide sequence