Strain Fitness in Sphingobium sp. HT1-2 around GFF3769

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,805,650	+		GFF3768	0.54	+0.1
3,805,650	+		GFF3768	0.54	-0.5
3,805,651	-		GFF3768	0.54	-2.4
3,805,653	-		GFF3768	0.54	-0.9
3,805,655	+		GFF3768	0.54	+0.5
3,805,655	+		GFF3768	0.54	-2.5
3,805,655	+		GFF3768	0.54	-1.0
3,805,658	-		GFF3768	0.54	-0.2
3,805,658	-		GFF3768	0.54	-1.3
3,805,663	-		GFF3768	0.54	+0.0
3,805,663	-		GFF3768	0.54	-1.3
3,805,673	+		GFF3768	0.55	-1.3
3,805,687	-		GFF3768	0.56	+0.5
3,805,687	-		GFF3768	0.56	-1.0
3,805,691	+		GFF3768	0.56	-0.2
3,805,705	-		GFF3768	0.57	+0.6
3,805,714	+		GFF3768	0.57	-0.3
3,805,716	+		GFF3768	0.57	-0.2
3,805,716	+		GFF3768	0.57	+0.4
3,805,716	+		GFF3768	0.57	-0.0
3,805,716	+		GFF3768	0.57	-0.5
3,805,724	-		GFF3768	0.58	-2.2
3,805,724	-		GFF3768	0.58	+0.8
3,805,724	-		GFF3768	0.58	+0.1
3,805,724	-		GFF3768	0.58	-0.6
3,805,724	-		GFF3768	0.58	-0.4
3,805,724	-		GFF3768	0.58	-0.5
3,805,724	-		GFF3768	0.58	-0.6
3,805,735	-		GFF3768	0.58	+0.8
3,805,739	+		GFF3768	0.59	-1.5
3,805,742	-		GFF3768	0.59	-1.9
3,805,747	-		GFF3768	0.59	-1.5
3,805,747	-		GFF3768	0.59	+0.9
3,805,749	-		GFF3768	0.59	-0.8
3,805,749	-		GFF3768	0.59	-2.0
3,805,751	+		GFF3768	0.59	+0.3
3,805,783	+		GFF3768	0.61	-1.8
3,805,816	+		GFF3768	0.63	+0.4
3,805,846	-		GFF3768	0.64	-0.7
3,805,865	+		GFF3768	0.65	-0.2
3,805,865	+		GFF3768	0.65	-0.2
3,805,865	+		GFF3768	0.65	-0.4
3,805,873	-		GFF3768	0.66	+1.4
3,805,919	+		GFF3768	0.68	-0.6
3,805,922	-		GFF3768	0.68	+0.9
3,805,931	+		GFF3768	0.69	+0.5
3,805,933	-		GFF3768	0.69	+0.7
3,805,941	+		GFF3768	0.69	-1.5
3,805,955	+		GFF3768	0.70	-0.2
3,805,970	+		GFF3768	0.71	+0.2
3,806,008	-		GFF3768	0.73	-1.7
3,806,043	+		GFF3768	0.75	+0.4
3,806,048	+		GFF3768	0.75	-0.9
3,806,087	+		GFF3768	0.77	+0.2
3,806,095	+		GFF3768	0.78	+0.2
3,806,095	+		GFF3768	0.78	-1.6
3,806,095	+		GFF3768	0.78	+0.9
3,806,095	+		GFF3768	0.78	-0.2
3,806,095	+		GFF3768	0.78	-2.3
3,806,095	+		GFF3768	0.78	-1.9
3,806,100	+		GFF3768	0.78	+0.4
3,806,103	-		GFF3768	0.78	-0.8
3,806,103	-		GFF3768	0.78	-0.7
3,806,103	-		GFF3768	0.78	-3.1
3,806,103	-		GFF3768	0.78	+1.6
3,806,103	-		GFF3768	0.78	-1.6
3,806,103	-		GFF3768	0.78	+0.4
3,806,116	-		GFF3768	0.79	+1.5
3,806,159	+		GFF3768	0.81	+1.0
3,806,164	+		GFF3768	0.81	+0.2
3,806,172	-		GFF3768	0.82	-0.9
3,806,174	+		GFF3768	0.82	-0.6
3,806,174	-		GFF3768	0.82	-0.8
3,806,182	-		GFF3768	0.82	+0.2
3,806,184	-		GFF3768	0.83	-0.4
3,806,191	+		GFF3768	0.83	-0.9
3,806,199	-		GFF3768	0.83	-2.2
3,806,210	-		GFF3768	0.84	+0.7
3,806,230	-		GFF3768	0.85	+0.2
3,806,280	+		GFF3768	0.88	-1.2
3,806,304	+		GFF3768	0.89	+1.4
3,806,305	+		GFF3768	0.89	-1.6
3,806,322	-				+0.7
3,806,325	+				+0.2
3,806,327	+				+0.5
3,806,397	+				+0.8
3,806,423	-				+1.1
3,806,450	+				+0.0
3,806,497	+				-2.9
3,806,500	-				-1.8
3,806,505	-				-0.3
3,806,505	-				+0.2
3,806,505	-				+1.1
3,806,522	+				+0.6
3,806,522	+				+0.8
3,806,522	+				-1.2
3,806,530	-				-0.2
3,806,535	-				+0.0
3,806,539	+				-0.4
3,806,539	+				-0.3
3,806,544	+				-1.5
3,806,544	+				-0.1
3,806,552	-				+0.2
3,806,552	-				-1.9
3,806,552	-				-0.6
3,806,559	-				-1.7
3,806,650	-				+1.4
3,806,652	+				-0.4
3,806,678	-				+0.2
3,806,709	-				+0.2
3,806,709	-				+0.4
3,806,737	-				+0.7
3,806,737	-				-1.3
3,806,770	-				-0.1
3,806,773	+				+0.2
3,806,780	+		GFF3769	0.10	+0.3
3,806,780	-		GFF3769	0.10	-0.0
3,806,794	+		GFF3769	0.11	-0.2
3,806,799	+		GFF3769	0.11	-0.3
3,806,805	+		GFF3769	0.12	+0.9
3,806,805	+		GFF3769	0.12	+1.5
3,806,807	-		GFF3769	0.12	-0.3
3,806,813	-		GFF3769	0.12	-0.8
3,806,813	-		GFF3769	0.12	-0.7
3,806,906	-		GFF3769	0.19	+0.2
3,806,913	+		GFF3769	0.20	-0.3
3,806,913	+		GFF3769	0.20	-1.4
3,806,913	+		GFF3769	0.20	-0.6
3,806,913	+		GFF3769	0.20	+0.7
3,806,937	+		GFF3769	0.22	-1.2
3,806,967	-		GFF3769	0.24	+0.3
3,806,994	+		GFF3769	0.26	-0.3
3,806,994	+		GFF3769	0.26	+0.2
3,806,994	+		GFF3769	0.26	+1.1
3,807,002	-		GFF3769	0.27	-0.1
3,807,002	-		GFF3769	0.27	+0.5
3,807,006	-		GFF3769	0.27	-0.1
3,807,016	+		GFF3769	0.28	-0.6
3,807,016	+		GFF3769	0.28	-0.8
3,807,021	+		GFF3769	0.28	+0.7
3,807,024	-		GFF3769	0.28	+1.1
3,807,033	+		GFF3769	0.29	+0.9
3,807,037	-		GFF3769	0.29	+1.4
3,807,038	-		GFF3769	0.29	-0.3
3,807,039	-		GFF3769	0.29	-1.9
3,807,081	+		GFF3769	0.33	-0.8
3,807,081	+		GFF3769	0.33	+0.5
3,807,081	+		GFF3769	0.33	+0.1
3,807,089	-		GFF3769	0.33	-1.5
3,807,113	+		GFF3769	0.35	-0.9
3,807,128	+		GFF3769	0.36	-0.8
3,807,166	+		GFF3769	0.39	+0.0
3,807,186	-		GFF3769	0.41	+0.2
3,807,188	+		GFF3769	0.41	+0.1
3,807,188	+		GFF3769	0.41	-2.4
3,807,188	+		GFF3769	0.41	+0.5
3,807,188	-		GFF3769	0.41	-1.6
3,807,196	-		GFF3769	0.41	+0.4
3,807,196	-		GFF3769	0.41	-0.7
3,807,196	-		GFF3769	0.41	+0.6
3,807,207	-		GFF3769	0.42	+0.9
3,807,207	-		GFF3769	0.42	-0.1
3,807,243	+		GFF3769	0.45	-1.5
3,807,256	-		GFF3769	0.46	-0.6
3,807,256	-		GFF3769	0.46	+0.7
3,807,267	+		GFF3769	0.47	+0.8
3,807,267	-		GFF3769	0.47	+0.4
3,807,289	+		GFF3769	0.48	+0.4
3,807,290	+		GFF3769	0.48	-1.4
3,807,299	+		GFF3769	0.49	+0.6
3,807,310	-		GFF3769	0.50	-0.2
3,807,353	-		GFF3769	0.53	-1.1
3,807,354	+		GFF3769	0.53	+1.4
3,807,389	-		GFF3769	0.56	-0.6
3,807,389	-		GFF3769	0.56	-1.4
3,807,400	-		GFF3769	0.57	+0.2
3,807,405	-		GFF3769	0.57	+0.9
3,807,405	-		GFF3769	0.57	-0.3
3,807,406	-		GFF3769	0.57	-0.8
3,807,408	+		GFF3769	0.57	-1.3
3,807,413	+		GFF3769	0.58	-2.1
3,807,414	-		GFF3769	0.58	+1.1
3,807,420	+		GFF3769	0.58	+0.6
3,807,421	-		GFF3769	0.58	-0.6
3,807,433	+		GFF3769	0.59	+1.4
3,807,433	+		GFF3769	0.59	+0.4
3,807,438	+		GFF3769	0.60	-0.7
3,807,438	+		GFF3769	0.60	+1.8
3,807,439	-		GFF3769	0.60	+0.2
3,807,443	+		GFF3769	0.60	-0.2
3,807,443	+		GFF3769	0.60	+1.5
3,807,448	+		GFF3769	0.60	-0.6
3,807,448	+		GFF3769	0.60	-2.8
3,807,448	+		GFF3769	0.60	+0.2
3,807,448	+		GFF3769	0.60	-0.3
3,807,451	-		GFF3769	0.60	+0.5
3,807,453	+		GFF3769	0.61	-0.4
3,807,456	-		GFF3769	0.61	-1.8
3,807,456	-		GFF3769	0.61	-0.3
3,807,456	-		GFF3769	0.61	+0.0
3,807,461	-		GFF3769	0.61	-0.3
3,807,461	-		GFF3769	0.61	-0.5
3,807,472	-		GFF3769	0.62	-0.7
3,807,482	+		GFF3769	0.63	-0.5
3,807,489	+		GFF3769	0.63	+0.2
3,807,522	+		GFF3769	0.66	-0.7
3,807,522	+		GFF3769	0.66	+0.2
3,807,530	-		GFF3769	0.66	-1.9
3,807,534	+		GFF3769	0.67	-1.6
3,807,534	+		GFF3769	0.67	-0.2
3,807,534	+		GFF3769	0.67	+0.3
3,807,534	+		GFF3769	0.67	+0.5
3,807,534	+		GFF3769	0.67	+0.1
3,807,534	+		GFF3769	0.67	-0.5
3,807,534	+		GFF3769	0.67	-0.0
3,807,540	-		GFF3769	0.67	+0.6
3,807,540	-		GFF3769	0.67	+0.0
3,807,540	-		GFF3769	0.67	+0.8
3,807,542	-		GFF3769	0.67	-0.8
3,807,542	-		GFF3769	0.67	-0.5
3,807,542	-		GFF3769	0.67	-0.9
3,807,542	-		GFF3769	0.67	-0.3
3,807,542	-		GFF3769	0.67	-1.8
3,807,568	-		GFF3769	0.69	-2.8
3,807,578	-		GFF3769	0.70	-1.3
3,807,589	-		GFF3769	0.71	-0.1
3,807,593	-		GFF3769	0.71	-0.4
3,807,625	-		GFF3769	0.74	-1.6
3,807,625	-		GFF3769	0.74	-2.1
3,807,625	-		GFF3769	0.74	+0.6
3,807,627	+		GFF3769	0.74	+0.2
3,807,630	-		GFF3769	0.74	-0.3
3,807,642	-		GFF3769	0.75	+1.8
3,807,642	-		GFF3769	0.75	-1.0
3,807,707	+		GFF3769	0.80	-1.0
3,807,717	+		GFF3769	0.81	-0.8
3,807,725	-		GFF3769	0.81	-1.1
3,807,725	-		GFF3769	0.81	-0.5
3,807,733	-		GFF3769	0.82	-1.2
3,807,733	-		GFF3769	0.82	+0.1
3,807,748	+		GFF3769	0.83	-0.4
3,807,748	+		GFF3769	0.83	+0.7
3,807,769	+		GFF3769	0.84	-0.7
3,807,769	+		GFF3769	0.84	-0.2
3,807,769	+		GFF3769	0.84	-1.1
3,807,769	+		GFF3769	0.84	-0.2
3,807,769	+		GFF3769	0.84	+0.4
3,807,769	+		GFF3769	0.84	-1.3
3,807,769	+		GFF3769	0.84	+1.1
3,807,769	+		GFF3769	0.84	+0.1
3,807,769	+		GFF3769	0.84	+0.1
3,807,777	-		GFF3769	0.85	-1.3
3,807,777	-		GFF3769	0.85	-0.6
3,807,777	-		GFF3769	0.85	-0.7
3,807,779	+		GFF3769	0.85	-0.4
3,807,806	+		GFF3769	0.87	+1.1
3,807,826	-		GFF3769	0.89	-1.1
3,807,844	+				-1.2
3,807,844	+				-0.3
3,807,848	+				+0.4
3,807,852	-				-1.9
3,807,858	+				-1.9
3,807,865	+				+0.5
3,807,865	+				+0.3
3,807,866	-				-1.0
3,807,866	-				-1.4
3,807,866	-				-1.7
3,807,866	-				-1.0
3,807,866	-				-1.6
3,807,869	+				+1.4
3,807,879	+				-0.3
3,807,911	+				+0.0
3,807,911	+				+0.0
3,807,911	+				+0.1
3,807,917	-				-0.8
3,807,919	-				-0.6
3,807,928	-				+0.8
3,807,940	+				-0.3
3,807,969	+				+0.1
3,807,969	+				-0.8
3,807,969	+				+1.0
3,807,977	-				+0.4
3,807,984	-				-0.3
3,807,988	+				-1.6
3,808,005	-				+0.7
3,808,150	-				-1.7
3,808,360	-		GFF3770	0.23	-1.3
3,808,408	+		GFF3770	0.27	-1.3
3,808,408	+		GFF3770	0.27	-1.3
3,808,416	-		GFF3770	0.27	-1.3
3,808,582	+		GFF3770	0.39	-1.2
3,808,670	-		GFF3770	0.46	-0.5