Strain Fitness in Sphingobium sp. HT1-2 around GFF3728

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,770,156	-		GFF3726	0.52	+0.7
3,770,158	-		GFF3726	0.52	-0.2
3,770,158	-		GFF3726	0.52	+0.2
3,770,167	-		GFF3726	0.53	-0.8
3,770,168	-		GFF3726	0.53	-2.2
3,770,173	-		GFF3726	0.53	-1.3
3,770,192	-		GFF3726	0.55	-0.1
3,770,194	-		GFF3726	0.55	-0.2
3,770,196	+		GFF3726	0.55	-0.2
3,770,197	+		GFF3726	0.55	+1.1
3,770,200	-		GFF3726	0.55	-0.2
3,770,204	-		GFF3726	0.56	-0.5
3,770,217	-		GFF3726	0.57	-0.3
3,770,226	+		GFF3726	0.57	-0.6
3,770,268	-		GFF3726	0.61	-1.1
3,770,272	+		GFF3726	0.61	-1.1
3,770,278	-		GFF3726	0.61	+0.5
3,770,278	-		GFF3726	0.61	-2.1
3,770,278	-		GFF3726	0.61	+0.4
3,770,292	-		GFF3726	0.63	-0.9
3,770,292	-		GFF3726	0.63	-0.1
3,770,298	+		GFF3726	0.63	+1.4
3,770,316	-		GFF3726	0.64	+0.9
3,770,325	-		GFF3726	0.65	+1.5
3,770,446	+		GFF3726	0.75	+0.3
3,770,464	+		GFF3726	0.76	-0.6
3,770,464	+		GFF3726	0.76	-1.1
3,770,464	+		GFF3726	0.76	+0.8
3,770,471	+		GFF3726	0.77	+1.5
3,770,471	+		GFF3726	0.77	+0.2
3,770,472	-		GFF3726	0.77	+0.1
3,770,472	-		GFF3726	0.77	-0.2
3,770,479	-		GFF3726	0.77	+0.7
3,770,479	-		GFF3726	0.77	+0.6
3,770,479	-		GFF3726	0.77	-1.8
3,770,479	-		GFF3726	0.77	-0.8
3,770,484	+		GFF3726	0.78	-0.4
3,770,484	+		GFF3726	0.78	-1.7
3,770,484	+		GFF3726	0.78	+0.8
3,770,484	+		GFF3726	0.78	+0.4
3,770,502	-		GFF3726	0.79	-0.1
3,770,517	-		GFF3726	0.80	-2.1
3,770,517	-		GFF3726	0.80	-1.3
3,770,523	+		GFF3726	0.81	-0.8
3,770,585	+		GFF3726	0.85	+0.4
3,770,586	-		GFF3726	0.86	+0.6
3,770,589	+		GFF3726	0.86	+1.2
3,770,589	+		GFF3726	0.86	-0.0
3,770,655	+				+0.7
3,770,663	-				+1.0
3,770,663	-				-0.8
3,770,663	-				+0.5
3,770,663	-				+0.4
3,770,665	+				+0.7
3,770,673	-				-1.3
3,770,673	-				+0.5
3,770,673	-				+0.8
3,770,736	-				-1.6
3,770,764	+				-1.3
3,770,764	+				+0.2
3,770,765	+				-0.6
3,770,772	-				+1.0
3,770,773	-				-0.2
3,770,773	-				+0.5
3,770,773	-				-1.5
3,770,774	+				+0.0
3,770,774	+				-0.5
3,770,774	+				+1.1
3,770,774	+				+1.2
3,770,774	+				-0.4
3,770,774	+				+0.9
3,770,774	+				+0.0
3,770,774	+				+0.2
3,770,774	+				-0.0
3,770,774	+				+0.1
3,770,774	+				-0.4
3,770,774	+				+0.8
3,770,775	+				-0.2
3,770,775	+				-0.2
3,770,780	+				-2.2
3,770,780	+				-1.4
3,770,780	+				-1.5
3,770,780	+				+1.2
3,770,781	+				-1.1
3,770,782	-				-0.1
3,770,782	-				-1.4
3,770,782	-				+0.2
3,770,782	-				+0.6
3,770,782	-				-0.6
3,770,782	-				+0.0
3,770,782	-				-0.1
3,770,782	-				-0.3
3,770,782	-				+0.4
3,770,782	-				-0.6
3,770,782	-				-1.5
3,770,782	-				+0.6
3,770,782	-				-0.2
3,770,782	-				+0.3
3,770,787	+				+0.5
3,770,788	-				+0.8
3,770,795	-				-1.5
3,770,807	-				-0.3
3,770,807	-				+0.5
3,770,809	+				+1.1
3,770,817	-				-1.8
3,770,822	+		GFF3727	0.11	-0.8
3,770,827	+		GFF3727	0.12	+1.2
3,770,827	+		GFF3727	0.12	+0.2
3,770,835	-		GFF3727	0.14	+1.0
3,770,840	+		GFF3727	0.16	+1.2
3,770,860	+		GFF3727	0.21	-2.1
3,770,863	-		GFF3727	0.22	+0.2
3,770,907	+		GFF3727	0.34	-0.1
3,770,907	+		GFF3727	0.34	+0.1
3,770,907	+		GFF3727	0.34	-0.1
3,770,907	+		GFF3727	0.34	-0.2
3,770,909	+		GFF3727	0.35	+0.1
3,770,915	-		GFF3727	0.36	-1.3
3,770,915	-		GFF3727	0.36	-2.1
3,770,915	-		GFF3727	0.36	+2.0
3,770,915	-		GFF3727	0.36	-0.2
3,770,915	-		GFF3727	0.36	+0.4
3,770,915	-		GFF3727	0.36	-0.9
3,770,915	-		GFF3727	0.36	-0.3
3,770,915	-		GFF3727	0.36	-0.8
3,770,915	-		GFF3727	0.36	-1.6
3,770,940	+		GFF3727	0.43	-0.3
3,770,945	+		GFF3727	0.45	+0.0
3,770,953	-		GFF3727	0.47	-0.7
3,770,963	+		GFF3727	0.50	-0.4
3,770,963	+		GFF3727	0.50	+0.8
3,770,963	+		GFF3727	0.50	-2.3
3,770,971	-		GFF3727	0.52	-1.2
3,770,978	+		GFF3727	0.54	-0.1
3,770,978	+		GFF3727	0.54	-0.7
3,770,981	-		GFF3727	0.55	-2.1
3,771,011	-		GFF3727	0.63	-0.1
3,771,022	-		GFF3727	0.66	-1.0
3,771,022	-		GFF3727	0.66	-0.3
3,771,047	+		GFF3727	0.73	+0.5
3,771,063	+		GFF3727	0.78	-1.6
3,771,070	+		GFF3727	0.79	+0.6
3,771,070	+		GFF3727	0.79	-0.1
3,771,070	+		GFF3727	0.79	+0.7
3,771,073	-		GFF3727	0.80	-3.0
3,771,078	-		GFF3727	0.82	-0.3
3,771,078	-		GFF3727	0.82	-0.5
3,771,078	-		GFF3727	0.82	-0.3
3,771,078	-		GFF3727	0.82	+0.5
3,771,078	-		GFF3727	0.82	+0.8
3,771,078	-		GFF3727	0.82	-0.2
3,771,078	-		GFF3727	0.82	-0.9
3,771,078	-		GFF3727	0.82	-0.8
3,771,078	-		GFF3727	0.82	+0.6
3,771,078	-		GFF3727	0.82	-0.3
3,771,082	+		GFF3727	0.83	-0.5
3,771,092	-		GFF3727	0.86	+1.5
3,771,092	-		GFF3727	0.86	+0.2
3,771,092	-		GFF3727	0.86	+0.4
3,771,092	-		GFF3727	0.86	+0.5
3,771,110	-				+0.2
3,771,120	+				-0.1
3,771,122	+				+1.2
3,771,122	+				+0.2
3,771,130	-				+0.4
3,771,130	-				-0.4
3,771,137	+				-0.6
3,771,137	+				-0.3
3,771,144	+				-0.4
3,771,162	+				+0.5
3,771,164	-				-0.0
3,771,189	+				-0.1
3,771,197	+				-1.0
3,771,197	-				-0.2
3,771,197	-				+1.1
3,771,197	-				+2.0
3,771,230	+				-0.6
3,771,238	+				-0.9
3,771,238	+				-0.6
3,771,238	-				+0.8
3,771,238	-				+0.3
3,771,244	-				+0.2
3,771,247	+				-0.2
3,771,271	+				-1.3
3,771,317	+				-0.4
3,771,317	+				-0.7
3,771,317	+				+1.4
3,771,317	+				-1.8
3,771,317	+				-0.2
3,771,325	-		GFF3728	0.10	+0.7
3,771,325	-		GFF3728	0.10	-2.0
3,771,325	-		GFF3728	0.10	-1.8
3,771,325	-		GFF3728	0.10	+0.5
3,771,325	-		GFF3728	0.10	+0.2
3,771,325	-		GFF3728	0.10	+0.4
3,771,335	+		GFF3728	0.11	-1.5
3,771,335	+		GFF3728	0.11	+1.8
3,771,347	-		GFF3728	0.11	+0.7
3,771,349	+		GFF3728	0.12	+1.1
3,771,349	+		GFF3728	0.12	+0.3
3,771,349	+		GFF3728	0.12	+0.8
3,771,349	+		GFF3728	0.12	-1.8
3,771,349	+		GFF3728	0.12	+0.1
3,771,349	+		GFF3728	0.12	+0.7
3,771,357	-		GFF3728	0.12	+0.3
3,771,357	-		GFF3728	0.12	+0.7
3,771,357	-		GFF3728	0.12	-0.6
3,771,357	-		GFF3728	0.12	+0.2
3,771,357	-		GFF3728	0.12	-0.2
3,771,357	-		GFF3728	0.12	+0.5
3,771,367	-		GFF3728	0.13	+0.9
3,771,383	+		GFF3728	0.13	-0.4
3,771,404	+		GFF3728	0.15	+1.5
3,771,407	+		GFF3728	0.15	-0.3
3,771,409	+		GFF3728	0.15	+1.0
3,771,455	-		GFF3728	0.18	-0.5
3,771,478	+		GFF3728	0.19	+1.4
3,771,486	-		GFF3728	0.19	+1.5
3,771,503	+		GFF3728	0.20	-1.3
3,771,522	+		GFF3728	0.21	+1.0
3,771,523	+		GFF3728	0.21	-1.5
3,771,528	+		GFF3728	0.22	+1.1
3,771,530	-		GFF3728	0.22	+0.8
3,771,531	+		GFF3728	0.22	+1.0
3,771,531	-		GFF3728	0.22	-0.7
3,771,533	+		GFF3728	0.22	-0.7
3,771,533	+		GFF3728	0.22	+0.1
3,771,533	+		GFF3728	0.22	+0.7
3,771,533	+		GFF3728	0.22	-0.6
3,771,533	+		GFF3728	0.22	-0.8
3,771,535	-		GFF3728	0.22	-0.1
3,771,536	-		GFF3728	0.22	+0.6
3,771,541	-		GFF3728	0.23	+0.2
3,771,541	-		GFF3728	0.23	-0.1
3,771,541	-		GFF3728	0.23	-0.8
3,771,541	-		GFF3728	0.23	+1.6
3,771,579	-		GFF3728	0.25	+0.4
3,771,582	+		GFF3728	0.25	-0.3
3,771,605	-		GFF3728	0.26	+0.1
3,771,619	-		GFF3728	0.27	-1.3
3,771,646	+		GFF3728	0.29	-0.8
3,771,665	-		GFF3728	0.30	+0.6
3,771,680	+		GFF3728	0.30	-1.5
3,771,681	-		GFF3728	0.31	+0.2
3,771,688	-		GFF3728	0.31	+0.2
3,771,714	-		GFF3728	0.32	-0.6
3,771,714	-		GFF3728	0.32	+0.1
3,771,725	+		GFF3728	0.33	+0.1
3,771,725	+		GFF3728	0.33	-1.1
3,771,725	+		GFF3728	0.33	+0.0
3,771,725	+		GFF3728	0.33	+0.5
3,771,733	-		GFF3728	0.34	+1.0
3,771,733	-		GFF3728	0.34	-0.2
3,771,733	-		GFF3728	0.34	+0.2
3,771,740	-		GFF3728	0.34	-2.1
3,771,742	+		GFF3728	0.34	+0.4
3,771,743	+		GFF3728	0.34	+0.3
3,771,744	+		GFF3728	0.34	-1.5
3,771,752	-		GFF3728	0.35	-0.1
3,771,772	-		GFF3728	0.36	-0.2
3,771,788	+		GFF3728	0.37	+0.2
3,771,788	+		GFF3728	0.37	+0.2
3,771,788	+		GFF3728	0.37	-1.4
3,771,788	+		GFF3728	0.37	-1.2
3,771,788	+		GFF3728	0.37	+0.8
3,771,788	+		GFF3728	0.37	+1.1
3,771,788	+		GFF3728	0.37	+0.9
3,771,788	+		GFF3728	0.37	+0.5
3,771,793	+		GFF3728	0.37	-1.2
3,771,796	-		GFF3728	0.37	+0.2
3,771,796	-		GFF3728	0.37	+0.4
3,771,796	-		GFF3728	0.37	-0.4
3,771,796	-		GFF3728	0.37	+2.1
3,771,796	-		GFF3728	0.37	-0.1
3,771,796	-		GFF3728	0.37	-0.1
3,771,796	-		GFF3728	0.37	+0.9
3,771,796	-		GFF3728	0.37	-1.9
3,771,796	-		GFF3728	0.37	-0.2
3,771,807	+		GFF3728	0.38	+0.7
3,771,831	-		GFF3728	0.39	-1.2
3,771,917	-		GFF3728	0.44	+1.4
3,771,926	+		GFF3728	0.45	+1.8
3,771,929	-		GFF3728	0.45	-0.6
3,771,942	+		GFF3728	0.45	-0.8
3,771,966	+		GFF3728	0.47	+1.2
3,771,968	+		GFF3728	0.47	-0.9
3,771,968	+		GFF3728	0.47	+0.9
3,771,973	+		GFF3728	0.47	+1.1
3,771,973	+		GFF3728	0.47	-2.0
3,771,973	+		GFF3728	0.47	-1.4
3,771,974	-		GFF3728	0.47	-1.5
3,771,976	-		GFF3728	0.47	+0.7
3,771,981	-		GFF3728	0.48	+0.7
3,771,981	-		GFF3728	0.48	-1.3
3,771,981	-		GFF3728	0.48	+0.5
3,771,981	-		GFF3728	0.48	+0.1
3,771,981	-		GFF3728	0.48	-0.0
3,772,008	+		GFF3728	0.49	+0.0
3,772,017	+		GFF3728	0.50	+0.8
3,772,020	-		GFF3728	0.50	-0.2
3,772,043	-		GFF3728	0.51	-0.0
3,772,060	+		GFF3728	0.52	+1.1
3,772,067	-		GFF3728	0.53	-1.1
3,772,081	+		GFF3728	0.53	+0.3
3,772,081	+		GFF3728	0.53	+1.0
3,772,084	-		GFF3728	0.54	+0.5
3,772,086	+		GFF3728	0.54	+0.1
3,772,086	+		GFF3728	0.54	-1.1
3,772,086	+		GFF3728	0.54	-0.2
3,772,089	-		GFF3728	0.54	-0.3
3,772,089	-		GFF3728	0.54	+0.7
3,772,094	-		GFF3728	0.54	+0.6
3,772,099	-		GFF3728	0.54	-0.2
3,772,099	-		GFF3728	0.54	-0.8
3,772,099	-		GFF3728	0.54	+0.3
3,772,110	-		GFF3728	0.55	+0.3
3,772,126	-		GFF3728	0.56	+0.6
3,772,157	+		GFF3728	0.58	-1.4
3,772,165	-		GFF3728	0.58	+1.2
3,772,172	+		GFF3728	0.59	-1.1
3,772,175	-		GFF3728	0.59	+0.8
3,772,177	+		GFF3728	0.59	-0.5
3,772,177	+		GFF3728	0.59	-1.5
3,772,183	+		GFF3728	0.59	-0.8
3,772,185	-		GFF3728	0.59	-0.7
3,772,188	+		GFF3728	0.60	+1.0
3,772,188	+		GFF3728	0.60	-0.8
3,772,188	+		GFF3728	0.60	-0.1
3,772,188	+		GFF3728	0.60	-1.3
3,772,188	+		GFF3728	0.60	+1.0
3,772,188	+		GFF3728	0.60	+0.5
3,772,188	+		GFF3728	0.60	+0.9
3,772,188	+		GFF3728	0.60	-0.5
3,772,188	+		GFF3728	0.60	-1.1
3,772,191	-		GFF3728	0.60	+0.4
3,772,196	-		GFF3728	0.60	+0.1
3,772,196	-		GFF3728	0.60	-0.3
3,772,196	-		GFF3728	0.60	-0.2
3,772,196	-		GFF3728	0.60	+0.1
3,772,201	-		GFF3728	0.60	+0.4
3,772,201	-		GFF3728	0.60	-0.2
3,772,213	+		GFF3728	0.61	+0.2
3,772,213	+		GFF3728	0.61	-0.5
3,772,213	+		GFF3728	0.61	+0.1
3,772,223	+		GFF3728	0.62	-0.2
3,772,223	+		GFF3728	0.62	+0.8
3,772,223	+		GFF3728	0.62	+1.0
3,772,223	+		GFF3728	0.62	-0.5
3,772,223	+		GFF3728	0.62	+0.5
3,772,223	+		GFF3728	0.62	-1.3
3,772,231	-		GFF3728	0.62	+1.0
3,772,231	-		GFF3728	0.62	-0.8
3,772,255	+		GFF3728	0.63	+0.2
3,772,255	+		GFF3728	0.63	+1.1
3,772,263	-		GFF3728	0.64	-1.4
3,772,277	-		GFF3728	0.65	-1.4
3,772,279	-		GFF3728	0.65	+0.7
3,772,279	-		GFF3728	0.65	+0.4
3,772,279	-		GFF3728	0.65	-0.9
3,772,279	-		GFF3728	0.65	+0.8
3,772,287	+		GFF3728	0.65	-1.6
3,772,287	+		GFF3728	0.65	-1.0
3,772,288	+		GFF3728	0.65	-0.5
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